PDB Short entry for 1G5T HEADER TRANSFERASE 02-NOV-00 1G5T TITLE THE THREE-DIMENSIONAL STRUCTURE OF ATP:CORRINOID ADENOSYLTRANSFERASE TITLE 2 FROM SALMONELLA TYPHIMURIUM. APO-ATP FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: COB(I)ALAMIN ADENOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CORRINOID ADENOSYLTRANSFERASE; COMPND 5 EC: 2.5.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 GENE: COBA; SOURCE 5 EXPRESSION_SYSTEM: SALMONELLA TYPHIMURIUM; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 602 KEYWDS P-LOOP PROTEIN, COBALAMIN BIOSYNTHESIS, RECA FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.RAYMENT,J.C.ESCALANTE-SEMERENA,C.B.BAUER REVDAT 6 07-FEB-24 1G5T 1 REMARK LINK REVDAT 5 13-JUL-11 1G5T 1 VERSN REVDAT 4 24-FEB-09 1G5T 1 VERSN REVDAT 3 01-APR-03 1G5T 1 JRNL REVDAT 2 28-MAR-01 1G5T 1 JRNL REVDAT 1 22-NOV-00 1G5T 0 JRNL AUTH C.B.BAUER,M.V.FONSECA,H.M.HOLDEN,J.B.THODEN,T.B.THOMPSON, JRNL AUTH 2 J.C.ESCALANTE-SEMERENA,I.RAYMENT JRNL TITL THREE-DIMENSIONAL STRUCTURE OF ATP:CORRINOID JRNL TITL 2 ADENOSYLTRANSFERASE FROM SALMONELLA TYPHIMURIUM IN ITS FREE JRNL TITL 3 STATE, COMPLEXED WITH MGATP, OR COMPLEXED WITH JRNL TITL 4 HYDROXYCOBALAMIN AND MGATP. JRNL REF BIOCHEMISTRY V. 40 361 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11148030 JRNL DOI 10.1021/BI002145O REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 14575 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1435 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1920 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 14575 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1207 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.015 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.730 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : 0.007 ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G5T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1000012269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7009 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APS-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK, DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17014 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% ME-PEG 350, 100 MM NACL, 50 MM REMARK 280 MES, PH 5.5, BATCH, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 166.46667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.23333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 124.85000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.61667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 208.08333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 166.46667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 83.23333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 41.61667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 124.85000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 208.08333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 24.75000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 42.86826 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.61667 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 4 REMARK 465 ARG A 5 REMARK 465 TYR A 6 REMARK 465 GLN A 7 REMARK 465 GLN A 8 REMARK 465 ARG A 9 REMARK 465 GLN A 10 REMARK 465 GLN A 11 REMARK 465 LYS A 12 REMARK 465 VAL A 13 REMARK 465 LYS A 14 REMARK 465 ASP A 15 REMARK 465 ARG A 16 REMARK 465 VAL A 17 REMARK 465 ASP A 18 REMARK 465 ALA A 19 REMARK 465 ARG A 20 REMARK 465 VAL A 21 REMARK 465 ALA A 22 REMARK 465 GLN A 23 REMARK 465 ALA A 24 REMARK 465 GLN A 25 REMARK 465 GLU A 26 REMARK 465 PHE A 184 REMARK 465 ASP A 185 REMARK 465 ALA A 186 REMARK 465 GLY A 187 REMARK 465 VAL A 188 REMARK 465 LYS A 189 REMARK 465 ALA A 190 REMARK 465 GLN A 191 REMARK 465 MET A 192 REMARK 465 GLY A 193 REMARK 465 ILE A 194 REMARK 465 ASP A 195 REMARK 465 TYR A 196 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1534 O HOH A 1734 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1716 O HOH A 1716 10665 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 27 CD GLU A 27 OE2 0.067 REMARK 500 GLU A 99 CD GLU A 99 OE2 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 74 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 HIS A 80 CA - CB - CG ANGL. DEV. = -11.7 DEGREES REMARK 500 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 98 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 101 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 101 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP A 118 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 118 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP A 169 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 169 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 91 117.00 -33.54 REMARK 500 TRP A 93 -1.16 72.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 998 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 42 OG1 REMARK 620 2 GLU A 128 OE2 84.3 REMARK 620 3 ATP A 999 O2B 89.0 173.0 REMARK 620 4 ATP A 999 O2B 89.0 173.0 0.0 REMARK 620 5 ATP A 999 O2A 174.1 99.6 87.2 87.2 REMARK 620 6 ATP A 999 O2A 174.1 99.0 87.8 87.8 0.7 REMARK 620 7 HOH A1589 O 89.8 86.3 91.6 91.6 94.9 95.3 REMARK 620 8 HOH A1590 O 83.1 94.5 86.8 86.8 92.1 91.7 172.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 999 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G5R RELATED DB: PDB REMARK 900 APO COBA REMARK 900 RELATED ID: 1G64 RELATED DB: PDB DBREF 1G5T A 1 196 UNP P31570 BTUR_SALTY 1 196 SEQRES 1 A 196 MET SER ASP GLU ARG TYR GLN GLN ARG GLN GLN LYS VAL SEQRES 2 A 196 LYS ASP ARG VAL ASP ALA ARG VAL ALA GLN ALA GLN GLU SEQRES 3 A 196 GLU ARG GLY ILE ILE ILE VAL PHE THR GLY ASN GLY LYS SEQRES 4 A 196 GLY LYS THR THR ALA ALA PHE GLY THR ALA ALA ARG ALA SEQRES 5 A 196 VAL GLY HIS GLY LYS ASN VAL GLY VAL VAL GLN PHE ILE SEQRES 6 A 196 LYS GLY THR TRP PRO ASN GLY GLU ARG ASN LEU LEU GLU SEQRES 7 A 196 PRO HIS GLY VAL GLU PHE GLN VAL MET ALA THR GLY PHE SEQRES 8 A 196 THR TRP GLU THR GLN ASN ARG GLU ALA ASP THR ALA ALA SEQRES 9 A 196 CYS MET ALA VAL TRP GLN HIS GLY LYS ARG MET LEU ALA SEQRES 10 A 196 ASP PRO LEU LEU ASP MET VAL VAL LEU ASP GLU LEU THR SEQRES 11 A 196 TYR MET VAL ALA TYR ASP TYR LEU PRO LEU GLU GLU VAL SEQRES 12 A 196 ILE SER ALA LEU ASN ALA ARG PRO GLY HIS GLN THR VAL SEQRES 13 A 196 ILE ILE THR GLY ARG GLY CYS HIS ARG ASP ILE LEU ASP SEQRES 14 A 196 LEU ALA ASP THR VAL SER GLU LEU ARG PRO VAL LYS HIS SEQRES 15 A 196 ALA PHE ASP ALA GLY VAL LYS ALA GLN MET GLY ILE ASP SEQRES 16 A 196 TYR HET MG A 998 1 HET ATP A 999 62 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 HOH *132(H2 O) HELIX 1 1 GLY A 40 HIS A 55 1 16 HELIX 2 2 ASN A 71 GLU A 78 1 8 HELIX 3 3 PRO A 79 GLY A 81 5 3 HELIX 4 4 GLU A 94 GLN A 96 5 3 HELIX 5 5 ASN A 97 LEU A 116 1 20 HELIX 6 6 GLU A 128 TYR A 135 1 8 HELIX 7 7 PRO A 139 ALA A 149 1 11 HELIX 8 8 HIS A 164 ALA A 171 1 8 SHEET 1 A 6 GLU A 83 VAL A 86 0 SHEET 2 A 6 VAL A 59 GLN A 63 1 O VAL A 59 N GLU A 83 SHEET 3 A 6 MET A 123 ASP A 127 1 O MET A 123 N GLY A 60 SHEET 4 A 6 THR A 155 THR A 159 1 O THR A 155 N VAL A 124 SHEET 5 A 6 ILE A 31 THR A 35 1 O ILE A 32 N ILE A 158 SHEET 6 A 6 THR A 173 GLU A 176 1 N THR A 173 O ILE A 31 LINK OG1 THR A 42 MG MG A 998 1555 1555 1.95 LINK OE2 GLU A 128 MG MG A 998 1555 1555 2.12 LINK MG MG A 998 O2BAATP A 999 1555 1555 2.14 LINK MG MG A 998 O2BBATP A 999 1555 1555 2.14 LINK MG MG A 998 O2AAATP A 999 1555 1555 2.09 LINK MG MG A 998 O2ABATP A 999 1555 1555 2.07 LINK MG MG A 998 O HOH A1589 1555 1555 2.12 LINK MG MG A 998 O HOH A1590 1555 1555 1.73 SITE 1 AC1 5 THR A 42 GLU A 128 ATP A 999 HOH A1589 SITE 2 AC1 5 HOH A1590 SITE 1 AC2 17 ASN A 37 GLY A 38 LYS A 39 GLY A 40 SITE 2 AC2 17 LYS A 41 THR A 42 THR A 43 ARG A 51 SITE 3 AC2 17 HIS A 55 GLU A 128 HIS A 182 MG A 998 SITE 4 AC2 17 HOH A1515 HOH A1585 HOH A1589 HOH A1590 SITE 5 AC2 17 HOH A1592 CRYST1 49.500 49.500 249.700 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020202 0.011664 0.000000 0.00000 SCALE2 0.000000 0.023327 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004005 0.00000