PDB Short entry for 1G7U HEADER LYASE 14-NOV-00 1G7U TITLE CRYSTAL STRUCTURES OF KDO8P SYNTHASE IN ITS BINARY COMPLEX WITH TITLE 2 SUBSTRATE PHOSPHOENOL PYRUVATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: KDO 8-P SYNTHASE; COMPND 5 EC: 4.1.2.16; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-ALPHA-BARRELS, LYASE, LIPOPOLYSACCHARIDE EXPDTA X-RAY DIFFRACTION AUTHOR O.A.ASOJO,J.M.FRIEDMAN,V.BELAKHOV,Y.SHOHAM,N.ADIR,T.BAASOV REVDAT 7 07-FEB-24 1G7U 1 REMARK SEQADV REVDAT 6 07-FEB-18 1G7U 1 REMARK REVDAT 5 13-JUL-11 1G7U 1 VERSN REVDAT 4 24-FEB-09 1G7U 1 VERSN REVDAT 3 04-JUL-01 1G7U 1 HETNAM FORMUL REVDAT 2 06-JUN-01 1G7U 1 JRNL REVDAT 1 16-MAY-01 1G7U 0 JRNL AUTH O.ASOJO,J.FRIEDMAN,N.ADIR,V.BELAKHOV,Y.SHOHAM,T.BAASOV JRNL TITL CRYSTAL STRUCTURES OF KDOP SYNTHASE IN ITS BINARY COMPLEXES JRNL TITL 2 WITH THE SUBSTRATE PHOSPHOENOLPYRUVATE AND WITH A JRNL TITL 3 MECHANISM-BASED INHIBITOR. JRNL REF BIOCHEMISTRY V. 40 6326 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11371194 JRNL DOI 10.1021/BI010339D REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 6811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 317 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2167 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 2.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.300 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1000012342. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-96 REMARK 200 TEMPERATURE (KELVIN) : 180 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7645 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.06600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES 61MM PH 6.1, GLYCEROL 25% V/V, PEG REMARK 280 400 10% V/V, 3MG/ML PEP, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 58.95000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.95000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 58.95000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 58.95000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 58.95000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 58.95000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 58.95000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 58.95000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 58.95000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 58.95000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 58.95000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 58.95000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 58.95000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 58.95000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 58.95000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 58.95000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 58.95000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 58.95000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 58.95000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 58.95000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 58.95000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 58.95000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 58.95000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 58.95000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 58.95000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 58.95000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 58.95000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 58.95000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 58.95000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 58.95000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 58.95000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 58.95000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 58.95000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 58.95000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 58.95000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 58.95000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 16750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 235.80000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 117.90000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 235.80000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 117.90000 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ARG A 207 REMARK 475 ASP A 208 REMARK 475 PRO A 209 REMARK 475 PHE A 210 REMARK 475 VAL A 211 REMARK 475 ALA A 212 REMARK 475 ALA A 213 REMARK 475 SER A 214 REMARK 475 GLY A 215 REMARK 475 GLY A 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 18 C - N - CA ANGL. DEV. = 14.8 DEGREES REMARK 500 PRO A 18 C - N - CD ANGL. DEV. = -16.4 DEGREES REMARK 500 SER A 65 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 PRO A 72 C - N - CA ANGL. DEV. = 13.8 DEGREES REMARK 500 PRO A 99 C - N - CA ANGL. DEV. = 11.8 DEGREES REMARK 500 PHE A 210 N - CA - C ANGL. DEV. = -19.9 DEGREES REMARK 500 ALA A 212 N - CA - C ANGL. DEV. = -22.8 DEGREES REMARK 500 PRO A 244 C - N - CA ANGL. DEV. = 12.1 DEGREES REMARK 500 PRO A 244 C - N - CD ANGL. DEV. = -18.4 DEGREES REMARK 500 CYS A 249 CA - CB - SG ANGL. DEV. = 11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 14 152.18 172.31 REMARK 500 PRO A 18 154.97 -9.96 REMARK 500 ASN A 26 -148.71 -89.32 REMARK 500 VAL A 27 127.36 -20.21 REMARK 500 LEU A 28 92.97 -66.88 REMARK 500 GLU A 29 -81.97 -83.12 REMARK 500 ARG A 31 -27.43 -36.75 REMARK 500 ALA A 34 -70.09 -32.71 REMARK 500 THR A 43 -71.50 -53.02 REMARK 500 LYS A 60 -94.97 -119.59 REMARK 500 ALA A 61 -44.07 68.82 REMARK 500 ARG A 63 -148.86 83.28 REMARK 500 SER A 64 139.71 -34.88 REMARK 500 SER A 65 -144.27 -141.40 REMARK 500 HIS A 67 -39.15 115.31 REMARK 500 SER A 68 76.86 -2.78 REMARK 500 PRO A 72 -24.39 -29.20 REMARK 500 LEU A 74 -62.78 -21.33 REMARK 500 GLU A 75 -82.39 -44.93 REMARK 500 ILE A 80 -35.23 -39.53 REMARK 500 GLU A 83 -83.14 -77.48 REMARK 500 LEU A 84 -19.68 -45.25 REMARK 500 LYS A 85 -89.98 -44.40 REMARK 500 PHE A 88 38.27 -151.68 REMARK 500 VAL A 96 -166.29 -78.83 REMARK 500 HIS A 97 -43.54 -148.46 REMARK 500 PRO A 99 -88.96 8.78 REMARK 500 SER A 100 -76.63 -13.77 REMARK 500 GLN A 101 4.77 -52.12 REMARK 500 ASP A 107 -38.24 -157.55 REMARK 500 ALA A 116 -37.30 -39.92 REMARK 500 ARG A 120 53.35 -91.81 REMARK 500 THR A 122 -79.30 53.82 REMARK 500 ASP A 123 -11.27 -47.10 REMARK 500 THR A 131 -100.82 -145.57 REMARK 500 ALA A 133 -160.94 -127.54 REMARK 500 VAL A 137 90.00 -49.70 REMARK 500 ASP A 153 -70.50 -43.56 REMARK 500 LYS A 162 77.08 -60.27 REMARK 500 ASP A 175 75.62 22.03 REMARK 500 PHE A 184 -75.80 -53.14 REMARK 500 ASN A 193 23.90 43.16 REMARK 500 ALA A 203 -78.73 -93.08 REMARK 500 GLN A 205 -61.64 -25.46 REMARK 500 PHE A 210 72.22 -155.54 REMARK 500 ALA A 212 -73.40 109.12 REMARK 500 SER A 214 -91.43 179.58 REMARK 500 ARG A 217 -131.47 51.15 REMARK 500 ARG A 218 132.12 84.73 REMARK 500 GLN A 220 62.77 -151.11 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEP A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G7V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF KDO8P SYNTHASE IN ITS BINARY COMPLEXES WITH REMARK 900 THE MECHANISM-BASED INHIBITOR DBREF 1G7U A 1 284 UNP P0A715 KDSA_ECOLI 1 284 SEQADV 1G7U VAL A 211 UNP P0A715 GLY 211 CONFLICT SEQRES 1 A 284 MET LYS GLN LYS VAL VAL SER ILE GLY ASP ILE ASN VAL SEQRES 2 A 284 ALA ASN ASP LEU PRO PHE VAL LEU PHE GLY GLY MET ASN SEQRES 3 A 284 VAL LEU GLU SER ARG ASP LEU ALA MET ARG ILE CYS GLU SEQRES 4 A 284 HIS TYR VAL THR VAL THR GLN LYS LEU GLY ILE PRO TYR SEQRES 5 A 284 VAL PHE LYS ALA SER PHE ASP LYS ALA ASN ARG SER SER SEQRES 6 A 284 ILE HIS SER TYR ARG GLY PRO GLY LEU GLU GLU GLY MET SEQRES 7 A 284 LYS ILE PHE GLN GLU LEU LYS GLN THR PHE GLY VAL LYS SEQRES 8 A 284 ILE ILE THR ASP VAL HIS GLU PRO SER GLN ALA GLN PRO SEQRES 9 A 284 VAL ALA ASP VAL VAL ASP VAL ILE GLN LEU PRO ALA PHE SEQRES 10 A 284 LEU ALA ARG GLN THR ASP LEU VAL GLU ALA MET ALA LYS SEQRES 11 A 284 THR GLY ALA VAL ILE ASN VAL LYS LYS PRO GLN PHE VAL SEQRES 12 A 284 SER PRO GLY GLN MET GLY ASN ILE VAL ASP LYS PHE LYS SEQRES 13 A 284 GLU GLY GLY ASN GLU LYS VAL ILE LEU CYS ASP ARG GLY SEQRES 14 A 284 ALA ASN PHE GLY TYR ASP ASN LEU VAL VAL ASP MET LEU SEQRES 15 A 284 GLY PHE SER ILE MET LYS LYS VAL SER GLY ASN SER PRO SEQRES 16 A 284 VAL ILE PHE ASP VAL THR HIS ALA LEU GLN CYS ARG ASP SEQRES 17 A 284 PRO PHE VAL ALA ALA SER GLY GLY ARG ARG ALA GLN VAL SEQRES 18 A 284 ALA GLU LEU ALA ARG ALA GLY MET ALA VAL GLY LEU ALA SEQRES 19 A 284 GLY LEU PHE ILE GLU ALA HIS PRO ASP PRO GLU HIS ALA SEQRES 20 A 284 LYS CYS ASP GLY PRO SER ALA LEU PRO LEU ALA LYS LEU SEQRES 21 A 284 GLU PRO PHE LEU LYS GLN MET LYS ALA ILE ASP ASP LEU SEQRES 22 A 284 VAL LYS GLY PHE GLU GLU LEU ASP THR SER LYS HET PEP A 300 10 HETNAM PEP PHOSPHOENOLPYRUVATE FORMUL 2 PEP C3 H5 O6 P FORMUL 3 HOH *15(H2 O) HELIX 1 1 ASP A 32 GLY A 49 1 18 HELIX 2 2 GLY A 73 PHE A 88 1 16 HELIX 3 3 GLU A 98 GLN A 103 5 6 HELIX 4 4 PRO A 104 VAL A 109 1 6 HELIX 5 5 PRO A 115 GLN A 121 5 7 HELIX 6 6 THR A 122 LYS A 130 1 9 HELIX 7 7 SER A 144 GLN A 147 5 4 HELIX 8 8 MET A 148 GLY A 158 1 11 HELIX 9 9 LEU A 182 SER A 191 1 10 HELIX 10 10 VAL A 200 ASP A 208 1 9 HELIX 11 11 GLN A 220 ALA A 230 1 11 HELIX 12 12 LEU A 260 PHE A 277 1 18 SHEET 1 A 2 SER A 7 ILE A 8 0 SHEET 2 A 2 ILE A 11 ASN A 12 -1 N ILE A 11 O ILE A 8 SHEET 1 B 7 TYR A 52 LYS A 55 0 SHEET 2 B 7 VAL A 20 GLY A 24 1 O LEU A 21 N VAL A 53 SHEET 3 B 7 GLY A 235 PHE A 237 1 O LEU A 236 N PHE A 22 SHEET 4 B 7 VAL A 196 ASP A 199 1 O VAL A 196 N GLY A 235 SHEET 5 B 7 VAL A 163 ASP A 167 1 O LEU A 165 N ILE A 197 SHEET 6 B 7 VAL A 134 LYS A 138 1 O ILE A 135 N ILE A 164 SHEET 7 B 7 VAL A 111 LEU A 114 1 O ILE A 112 N ASN A 136 SHEET 1 C 2 ALA A 170 ASN A 171 0 SHEET 2 C 2 LEU A 177 VAL A 178 -1 N VAL A 178 O ALA A 170 SHEET 1 D 2 ALA A 240 HIS A 241 0 SHEET 2 D 2 LEU A 255 PRO A 256 1 O LEU A 255 N HIS A 241 SITE 1 AC1 4 PHE A 117 ARG A 168 HIS A 202 PRO A 252 CRYST1 117.900 117.900 117.900 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008480 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008480 0.00000