PDB Short entry for 1G9X HEADER STRUCTURAL GENOMICS 28-NOV-00 1G9X TITLE CHARACTERIZATION OF THE TWINNING STRUCTURE OF MJ1267, AN ATP-BINDING TITLE 2 CASSETTE OF AN ABC TRANSPORTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP- COMPND 3 BINDING PROTEIN; COMPND 4 CHAIN: A, B, C; COMPND 5 FRAGMENT: MJ1267; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: STRUCTURAL DNA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HEMIHEDRAL TWINNING STRUCTURE, ATP-BINDING CASSETTE, ABC TRANSPORTER, KEYWDS 2 STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR Y.-R.YUAN,J.F.HUNT REVDAT 5 03-APR-24 1G9X 1 REMARK REVDAT 4 07-FEB-24 1G9X 1 REMARK REVDAT 3 27-OCT-21 1G9X 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1G9X 1 VERSN REVDAT 1 11-FEB-03 1G9X 0 JRNL AUTH Y.R.YUAN,O.MARTSINKEVICH,J.F.HUNT JRNL TITL STRUCTURAL CHARACTERIZATION OF AN MJ1267 ATP-BINDING JRNL TITL 2 CASSETTE CRYSTAL WITH A COMPLEX PATTERN OF TWINNING CAUSED JRNL TITL 3 BY PROMISCUOUS FIBER PACKING. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 59 225 2003 JRNL REFN ISSN 0907-4449 JRNL PMID 12554933 JRNL DOI 10.1107/S0907444902018954 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1077889.470 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 18662 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1730 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2788 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 278 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6006 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.220 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.140 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.960 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.430 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.130 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 49.26 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G9X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-00. REMARK 100 THE DEPOSITION ID IS D_1000012416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18662 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 14.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 1.580 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.30 REMARK 200 R MERGE FOR SHELL (I) : 0.06800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: COORDINATION OF C2 MJ1267 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS/HCL, PEG 2000MME, GLYCEROL, MG REMARK 280 -ADP, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 14.06333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.12667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 257 REMARK 465 MET B 1001 REMARK 465 ARG B 1002 REMARK 465 ASP B 1003 REMARK 465 GLU B 1257 REMARK 465 MET C 2001 REMARK 465 ARG C 2002 REMARK 465 ASP C 2003 REMARK 465 GLU C 2257 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 125 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 5 146.97 -9.19 REMARK 500 ASP A 24 75.96 -112.86 REMARK 500 SER A 29 65.22 -150.97 REMARK 500 VAL A 35 68.70 -114.97 REMARK 500 GLU A 61 112.45 -174.39 REMARK 500 ASN A 68 63.27 60.85 REMARK 500 ASN A 109 99.44 -162.47 REMARK 500 PRO A 125 83.77 -63.92 REMARK 500 LYS A 126 46.02 -88.85 REMARK 500 SER A 155 176.54 -58.01 REMARK 500 MET A 169 45.10 -69.82 REMARK 500 THR A 170 -28.48 -150.86 REMARK 500 ASN A 171 63.39 69.77 REMARK 500 ALA A 182 106.14 -52.85 REMARK 500 VAL A 184 174.11 -58.84 REMARK 500 VAL A 216 33.14 -87.79 REMARK 500 ILE A 220 122.30 -31.08 REMARK 500 ARG A 236 36.03 -152.20 REMARK 500 PRO A 248 -74.48 -31.29 REMARK 500 ASN B1012 48.53 22.72 REMARK 500 ASP B1034 140.85 -176.81 REMARK 500 THR B1054 34.34 -84.98 REMARK 500 GLU B1061 144.48 -171.44 REMARK 500 ASN B1068 -36.95 85.30 REMARK 500 LYS B1069 54.59 -61.75 REMARK 500 ASP B1070 106.95 1.54 REMARK 500 ALA B1077 33.16 -73.72 REMARK 500 THR B1098 -175.52 -65.28 REMARK 500 SER B1113 161.32 -45.00 REMARK 500 LYS B1126 68.81 -109.88 REMARK 500 GLU B1127 -144.16 -95.20 REMARK 500 GLU B1128 -103.09 -73.35 REMARK 500 GLU B1129 1.50 -63.98 REMARK 500 LYS B1142 74.47 51.09 REMARK 500 LEU B1143 -8.21 -140.39 REMARK 500 TYR B1147 -31.73 -31.70 REMARK 500 GLU B1153 6.71 -58.63 REMARK 500 LEU B1154 -159.41 -96.51 REMARK 500 GLU B1179 61.05 64.70 REMARK 500 ASP B1214 -87.92 -137.94 REMARK 500 ASP B1221 -69.20 -125.19 REMARK 500 PHE B1227 108.85 -167.10 REMARK 500 ASN B1228 14.67 86.00 REMARK 500 GLU B1234 118.68 -162.04 REMARK 500 ILE B1255 104.43 -29.14 REMARK 500 ASN C2012 46.37 37.31 REMARK 500 PHE C2017 73.32 -151.98 REMARK 500 VAL C2026 107.21 -58.67 REMARK 500 ILE C2028 -167.33 -68.10 REMARK 500 SER C2029 104.43 -169.28 REMARK 500 REMARK 500 THIS ENTRY HAS 74 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 47 OG REMARK 620 2 ADP A 300 O1B 110.3 REMARK 620 3 HOH A3038 O 85.1 89.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B1047 OG REMARK 620 2 GLU B1179 OE2 137.3 REMARK 620 3 HOH B3030 O 72.0 83.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 2301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MMC A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MMC B 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MMC C 2302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C 2300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G6H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MJ1267 DBREF 1G9X A 1 257 UNP Q58663 LIVG_METJA 1 257 DBREF 1G9X B 1001 1257 UNP Q58663 LIVG_METJA 1 257 DBREF 1G9X C 2001 2257 UNP Q58663 LIVG_METJA 1 257 SEQADV 1G9X CYS A 31 UNP Q58663 ASN 31 ENGINEERED MUTATION SEQADV 1G9X CYS B 1031 UNP Q58663 ASN 31 ENGINEERED MUTATION SEQADV 1G9X CYS C 2031 UNP Q58663 ASN 31 ENGINEERED MUTATION SEQRES 1 A 257 MET ARG ASP THR MET GLU ILE LEU ARG THR GLU ASN ILE SEQRES 2 A 257 VAL LYS TYR PHE GLY GLU PHE LYS ALA LEU ASP GLY VAL SEQRES 3 A 257 SER ILE SER VAL CYS LYS GLY ASP VAL THR LEU ILE ILE SEQRES 4 A 257 GLY PRO ASN GLY SER GLY LYS SER THR LEU ILE ASN VAL SEQRES 5 A 257 ILE THR GLY PHE LEU LYS ALA ASP GLU GLY ARG VAL TYR SEQRES 6 A 257 PHE GLU ASN LYS ASP ILE THR ASN LYS GLU PRO ALA GLU SEQRES 7 A 257 LEU TYR HIS TYR GLY ILE VAL ARG THR PHE GLN THR PRO SEQRES 8 A 257 GLN PRO LEU LYS GLU MET THR VAL LEU GLU ASN LEU LEU SEQRES 9 A 257 ILE GLY GLU ILE ASN PRO GLY GLU SER PRO LEU ASN SER SEQRES 10 A 257 LEU PHE TYR LYS LYS TRP ILE PRO LYS GLU GLU GLU MET SEQRES 11 A 257 VAL GLU LYS ALA PHE LYS ILE LEU GLU PHE LEU LYS LEU SEQRES 12 A 257 SER HIS LEU TYR ASP ARG LYS ALA GLY GLU LEU SER GLY SEQRES 13 A 257 GLY GLN MET LYS LEU VAL GLU ILE GLY ARG ALA LEU MET SEQRES 14 A 257 THR ASN PRO LYS MET ILE VAL MET ASP GLU PRO ILE ALA SEQRES 15 A 257 GLY VAL ALA PRO GLY LEU ALA HIS ASP ILE PHE ASN HIS SEQRES 16 A 257 VAL LEU GLU LEU LYS ALA LYS GLY ILE THR PHE LEU ILE SEQRES 17 A 257 ILE GLU HIS ARG LEU ASP ILE VAL LEU ASN TYR ILE ASP SEQRES 18 A 257 HIS LEU TYR VAL MET PHE ASN GLY GLN ILE ILE ALA GLU SEQRES 19 A 257 GLY ARG GLY GLU GLU GLU ILE LYS ASN VAL LEU SER ASP SEQRES 20 A 257 PRO LYS VAL VAL GLU ILE TYR ILE GLY GLU SEQRES 1 B 257 MET ARG ASP THR MET GLU ILE LEU ARG THR GLU ASN ILE SEQRES 2 B 257 VAL LYS TYR PHE GLY GLU PHE LYS ALA LEU ASP GLY VAL SEQRES 3 B 257 SER ILE SER VAL CYS LYS GLY ASP VAL THR LEU ILE ILE SEQRES 4 B 257 GLY PRO ASN GLY SER GLY LYS SER THR LEU ILE ASN VAL SEQRES 5 B 257 ILE THR GLY PHE LEU LYS ALA ASP GLU GLY ARG VAL TYR SEQRES 6 B 257 PHE GLU ASN LYS ASP ILE THR ASN LYS GLU PRO ALA GLU SEQRES 7 B 257 LEU TYR HIS TYR GLY ILE VAL ARG THR PHE GLN THR PRO SEQRES 8 B 257 GLN PRO LEU LYS GLU MET THR VAL LEU GLU ASN LEU LEU SEQRES 9 B 257 ILE GLY GLU ILE ASN PRO GLY GLU SER PRO LEU ASN SER SEQRES 10 B 257 LEU PHE TYR LYS LYS TRP ILE PRO LYS GLU GLU GLU MET SEQRES 11 B 257 VAL GLU LYS ALA PHE LYS ILE LEU GLU PHE LEU LYS LEU SEQRES 12 B 257 SER HIS LEU TYR ASP ARG LYS ALA GLY GLU LEU SER GLY SEQRES 13 B 257 GLY GLN MET LYS LEU VAL GLU ILE GLY ARG ALA LEU MET SEQRES 14 B 257 THR ASN PRO LYS MET ILE VAL MET ASP GLU PRO ILE ALA SEQRES 15 B 257 GLY VAL ALA PRO GLY LEU ALA HIS ASP ILE PHE ASN HIS SEQRES 16 B 257 VAL LEU GLU LEU LYS ALA LYS GLY ILE THR PHE LEU ILE SEQRES 17 B 257 ILE GLU HIS ARG LEU ASP ILE VAL LEU ASN TYR ILE ASP SEQRES 18 B 257 HIS LEU TYR VAL MET PHE ASN GLY GLN ILE ILE ALA GLU SEQRES 19 B 257 GLY ARG GLY GLU GLU GLU ILE LYS ASN VAL LEU SER ASP SEQRES 20 B 257 PRO LYS VAL VAL GLU ILE TYR ILE GLY GLU SEQRES 1 C 257 MET ARG ASP THR MET GLU ILE LEU ARG THR GLU ASN ILE SEQRES 2 C 257 VAL LYS TYR PHE GLY GLU PHE LYS ALA LEU ASP GLY VAL SEQRES 3 C 257 SER ILE SER VAL CYS LYS GLY ASP VAL THR LEU ILE ILE SEQRES 4 C 257 GLY PRO ASN GLY SER GLY LYS SER THR LEU ILE ASN VAL SEQRES 5 C 257 ILE THR GLY PHE LEU LYS ALA ASP GLU GLY ARG VAL TYR SEQRES 6 C 257 PHE GLU ASN LYS ASP ILE THR ASN LYS GLU PRO ALA GLU SEQRES 7 C 257 LEU TYR HIS TYR GLY ILE VAL ARG THR PHE GLN THR PRO SEQRES 8 C 257 GLN PRO LEU LYS GLU MET THR VAL LEU GLU ASN LEU LEU SEQRES 9 C 257 ILE GLY GLU ILE ASN PRO GLY GLU SER PRO LEU ASN SER SEQRES 10 C 257 LEU PHE TYR LYS LYS TRP ILE PRO LYS GLU GLU GLU MET SEQRES 11 C 257 VAL GLU LYS ALA PHE LYS ILE LEU GLU PHE LEU LYS LEU SEQRES 12 C 257 SER HIS LEU TYR ASP ARG LYS ALA GLY GLU LEU SER GLY SEQRES 13 C 257 GLY GLN MET LYS LEU VAL GLU ILE GLY ARG ALA LEU MET SEQRES 14 C 257 THR ASN PRO LYS MET ILE VAL MET ASP GLU PRO ILE ALA SEQRES 15 C 257 GLY VAL ALA PRO GLY LEU ALA HIS ASP ILE PHE ASN HIS SEQRES 16 C 257 VAL LEU GLU LEU LYS ALA LYS GLY ILE THR PHE LEU ILE SEQRES 17 C 257 ILE GLU HIS ARG LEU ASP ILE VAL LEU ASN TYR ILE ASP SEQRES 18 C 257 HIS LEU TYR VAL MET PHE ASN GLY GLN ILE ILE ALA GLU SEQRES 19 C 257 GLY ARG GLY GLU GLU GLU ILE LYS ASN VAL LEU SER ASP SEQRES 20 C 257 PRO LYS VAL VAL GLU ILE TYR ILE GLY GLU HET MG A 301 1 HET MMC A 302 2 HET ADP A 300 27 HET MG B1301 1 HET MMC B1302 2 HET ADP B1300 27 HET MG C2301 1 HET MMC C2302 2 HET ADP C2300 27 HETNAM MG MAGNESIUM ION HETNAM MMC METHYL MERCURY ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 4 MG 3(MG 2+) FORMUL 5 MMC 3(C H3 HG 1+) FORMUL 6 ADP 3(C10 H15 N5 O10 P2) FORMUL 13 HOH *143(H2 O) HELIX 1 1 GLY A 45 THR A 54 1 10 HELIX 2 2 GLU A 75 TYR A 80 1 6 HELIX 3 3 LEU A 100 ILE A 105 1 6 HELIX 4 4 SER A 113 PHE A 119 1 7 HELIX 5 5 GLU A 127 LEU A 141 1 15 HELIX 6 6 LEU A 143 TYR A 147 5 5 HELIX 7 7 ALA A 151 LEU A 154 5 4 HELIX 8 8 SER A 155 ALA A 167 1 13 HELIX 9 9 ALA A 185 ALA A 201 1 17 HELIX 10 10 GLY A 237 SER A 246 1 10 HELIX 11 11 ASP A 247 ILE A 253 1 7 HELIX 12 12 LYS B 1046 THR B 1054 1 9 HELIX 13 13 GLU B 1075 TYR B 1080 1 6 HELIX 14 14 GLN B 1092 GLU B 1096 5 5 HELIX 15 15 LEU B 1100 ASN B 1109 1 10 HELIX 16 16 SER B 1113 TYR B 1120 1 8 HELIX 17 17 GLU B 1128 LEU B 1141 1 14 HELIX 18 18 SER B 1155 ALA B 1167 1 13 HELIX 19 19 LEU B 1168 ASN B 1171 5 4 HELIX 20 20 ALA B 1185 GLY B 1203 1 19 HELIX 21 21 ASP B 1214 ILE B 1220 5 7 HELIX 22 22 GLY B 1237 LEU B 1245 1 9 HELIX 23 23 ASP B 1247 GLU B 1252 1 6 HELIX 24 24 GLY C 2045 THR C 2054 1 10 HELIX 25 25 GLU C 2075 TYR C 2080 1 6 HELIX 26 26 GLN C 2092 MET C 2097 5 6 HELIX 27 27 LEU C 2100 ILE C 2105 1 6 HELIX 28 28 LEU C 2115 TYR C 2120 5 6 HELIX 29 29 ALA C 2134 LEU C 2141 1 8 HELIX 30 30 LYS C 2142 LEU C 2146 5 5 HELIX 31 31 SER C 2155 THR C 2170 1 16 HELIX 32 32 ALA C 2185 ALA C 2201 1 17 HELIX 33 33 GLY C 2237 ASP C 2247 1 11 HELIX 34 34 ASP C 2247 GLU C 2252 1 6 SHEET 1 A 3 PHE A 20 VAL A 26 0 SHEET 2 A 3 LEU A 8 PHE A 17 -1 O ILE A 13 N VAL A 26 SHEET 3 A 3 GLU A 61 PHE A 66 -1 O GLU A 61 N VAL A 14 SHEET 1 B 6 ILE A 84 ARG A 86 0 SHEET 2 B 6 MET A 174 ASP A 178 1 O MET A 174 N VAL A 85 SHEET 3 B 6 THR A 205 GLU A 210 1 O THR A 205 N ILE A 175 SHEET 4 B 6 VAL A 35 ILE A 39 1 O THR A 36 N ILE A 208 SHEET 5 B 6 HIS A 222 PHE A 227 1 O HIS A 222 N LEU A 37 SHEET 6 B 6 GLN A 230 GLY A 235 -1 N GLN A 230 O PHE A 227 SHEET 1 C 3 ASP B1024 VAL B1030 0 SHEET 2 C 3 LEU B1008 VAL B1014 -1 O LEU B1008 N VAL B1030 SHEET 3 C 3 GLU B1061 TYR B1065 -1 O GLU B1061 N VAL B1014 SHEET 1 D 6 VAL B1085 ARG B1086 0 SHEET 2 D 6 MET B1174 VAL B1176 1 O MET B1174 N VAL B1085 SHEET 3 D 6 THR B1205 ILE B1209 1 O THR B1205 N ILE B1175 SHEET 4 D 6 VAL B1035 ILE B1039 1 N THR B1036 O PHE B1206 SHEET 5 D 6 LEU B1223 MET B1226 1 O TYR B1224 N ILE B1039 SHEET 6 D 6 ILE B1231 GLU B1234 -1 N ILE B1232 O VAL B1225 SHEET 1 E 3 LYS C2021 VAL C2026 0 SHEET 2 E 3 LEU C2008 TYR C2016 -1 N ILE C2013 O VAL C2026 SHEET 3 E 3 SER C2029 VAL C2030 -1 O VAL C2030 N LEU C2008 SHEET 1 F 3 LYS C2021 VAL C2026 0 SHEET 2 F 3 LEU C2008 TYR C2016 -1 N ILE C2013 O VAL C2026 SHEET 3 F 3 GLU C2061 VAL C2064 -1 O GLU C2061 N VAL C2014 SHEET 1 G 5 MET C2174 ASP C2178 0 SHEET 2 G 5 THR C2205 ILE C2209 1 O THR C2205 N ILE C2175 SHEET 3 G 5 VAL C2035 ILE C2039 1 O THR C2036 N ILE C2208 SHEET 4 G 5 HIS C2222 MET C2226 1 O HIS C2222 N LEU C2037 SHEET 5 G 5 ILE C2231 ARG C2236 -1 N ILE C2232 O VAL C2225 LINK OG SER A 47 MG MG A 301 1555 1555 1.61 LINK O1B ADP A 300 MG MG A 301 1555 1555 1.66 LINK MG MG A 301 O HOH A3038 1555 1555 2.37 LINK OG SER B1047 MG MG B1301 1555 1555 2.41 LINK OE2 GLU B1179 MG MG B1301 1555 1555 1.83 LINK MG MG B1301 O HOH B3030 1555 1555 2.10 LINK OG SER C2047 MG MG C2301 1555 1555 2.32 SITE 1 AC1 3 SER A 47 ADP A 300 HOH A3038 SITE 1 AC2 5 SER B1047 ASP B1178 GLU B1179 ADP B1300 SITE 2 AC2 5 HOH B3030 SITE 1 AC3 2 SER C2047 ADP C2300 SITE 1 AC4 4 THR A 4 MET A 5 GLU A 6 CYS A 31 SITE 1 AC5 15 PHE A 17 PHE A 20 PRO A 41 ASN A 42 SITE 2 AC5 15 GLY A 43 SER A 44 GLY A 45 LYS A 46 SITE 3 AC5 15 SER A 47 THR A 48 MG A 301 HOH A3013 SITE 4 AC5 15 HOH A3034 HOH A3038 ARG B1236 SITE 1 AC6 2 CYS B1031 ARG B1236 SITE 1 AC7 12 ASN A 68 PHE B1017 PHE B1020 PRO B1041 SITE 2 AC7 12 GLY B1043 SER B1044 GLY B1045 LYS B1046 SITE 3 AC7 12 SER B1047 THR B1048 MG B1301 HOH B3030 SITE 1 AC8 2 THR C2004 CYS C2031 SITE 1 AC9 11 GLY A 256 PHE C2017 PRO C2041 GLY C2043 SITE 2 AC9 11 SER C2044 GLY C2045 LYS C2046 SER C2047 SITE 3 AC9 11 THR C2048 MG C2301 HOH C3008 CRYST1 117.310 117.310 42.190 90.00 90.00 120.00 P 31 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008524 0.004922 0.000000 0.00000 SCALE2 0.000000 0.009843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023702 0.00000