PDB Short entry for 1GBQ HEADER COMPLEX (SIGNAL TRANSDUCTION/PEPTIDE) 23-DEC-96 1GBQ TITLE SOLUTION NMR STRUCTURE OF THE GRB2 N-TERMINAL SH3 DOMAIN COMPLEXED TITLE 2 WITH A TEN-RESIDUE PEPTIDE DERIVED FROM SOS DIRECT REFINEMENT AGAINST TITLE 3 NOES, J-COUPLINGS, AND 1H AND 13C CHEMICAL SHIFTS, MINIMIZED AVERAGE TITLE 4 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRB2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL SH3 DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SOS-1; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: RESIDUES 1135 - 1144, AC-VPPPVPPRRR-NH2; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 CELL_LINE: BL21; SOURCE 7 CELLULAR_LOCATION: CYTOPLASMIC; SOURCE 8 GENE: POTENTIAL; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_VECTOR: PGTX-2T (PHARMACIA); SOURCE 14 EXPRESSION_SYSTEM_PLASMID: BL21; SOURCE 15 MOL_ID: 2; SOURCE 16 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 17 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 18 ORGANISM_TAXID: 10090; SOURCE 19 CELLULAR_LOCATION: CYTOPLASM KEYWDS COMPLEX (SIGNAL TRANSDUCTION-PEPTIDE), SH3 DOMAIN, COMPLEX (SIGNAL KEYWDS 2 TRANSDUCTION-PEPTIDE) COMPLEX EXPDTA SOLUTION NMR AUTHOR M.WITTEKIND,C.MAPELLI,V.LEE,V.GOLDFARB,M.S.FRIEDRICHS,C.A.MEYERS, AUTHOR 2 L.MUELLER REVDAT 3 23-FEB-22 1GBQ 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1GBQ 1 VERSN REVDAT 1 04-SEP-97 1GBQ 0 JRNL AUTH M.WITTEKIND,C.MAPELLI,V.LEE,V.GOLDFARB,M.S.FRIEDRICHS, JRNL AUTH 2 C.A.MEYERS,L.MUELLER JRNL TITL SOLUTION STRUCTURE OF THE GRB2 N-TERMINAL SH3 DOMAIN JRNL TITL 2 COMPLEXED WITH A TEN-RESIDUE PEPTIDE DERIVED FROM SOS: JRNL TITL 3 DIRECT REFINEMENT AGAINST NOES, J-COUPLINGS AND 1H AND 13C JRNL TITL 4 CHEMICAL SHIFTS. JRNL REF J.MOL.BIOL. V. 267 933 1997 JRNL REFN ISSN 0022-2836 JRNL PMID 9135122 JRNL DOI 10.1006/JMBI.1996.0886 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.WITTEKIND,C.MAPELLI,B.T.FARMER II,K.L.SUEN,V.GOLDFARB, REMARK 1 AUTH 2 J.TSAO,T.LAVOIE,M.BARBACID,C.A.MEYERS,L.MUELLER REMARK 1 TITL ORIENTATION OF PEPTIDE FRAGMENTS FROM SOS PROTEINS BOUND TO REMARK 1 TITL 2 THE N-TERMINAL SH3 DOMAIN OF GRB2 DETERMINED BY NMR REMARK 1 TITL 3 SPECTROSCOPY REMARK 1 REF BIOCHEMISTRY V. 33 13531 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.L.SUEN,X.R.BUSTELO,T.PAWSON,M.BARBACID REMARK 1 TITL MOLECULAR CLONING OF THE MOUSE GRB2 GENE: DIFFERENTIAL REMARK 1 TITL 2 INTERACTION OF THE GRB2 ADAPTOR PROTEIN WITH EPIDERMAL REMARK 1 TITL 3 GROWTH FACTOR AND NERVE GROWTH FACTOR RECEPTORS REMARK 1 REF MOL.CELL.BIOL. V. 13 5500 1993 REMARK 1 REFN ISSN 0270-7306 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.BOWTELL,P.FU,M.SIMON,P.SENIOR REMARK 1 TITL IDENTIFICATION OF MURINE HOMOLOGUES OF THE DROSOPHILA SON OF REMARK 1 TITL 2 SEVENLESS GENE: POTENTIAL ACTIVATORS OF RAS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 89 6511 1992 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TWO ENSEMBLES WERE CALCULATED. BOTH REMARK 3 USED THE SAME SET OF NOE/ANGLE/J-COUPLING RESTRAINTS, BUT THEY REMARK 3 DIFFER IN THAT THE 2ND ENSEMBLE ALSO INCLUDED 1H AND 13C REMARK 3 CHEMICAL SHIFTS AS RESTRAINTS (SEE PRIMARY REFERENCE FOR DETAILS) REMARK 3 . REMARK 4 REMARK 4 1GBQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173505. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298. REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : SEE JOURNAL ARTICLE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : DG, SA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 ARG A -6 REMARK 465 ARG A -5 REMARK 465 ALA A -4 REMARK 465 SER A -3 REMARK 465 VAL A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 HIS A 58 REMARK 465 PRO A 59 REMARK 465 GLU A 60 REMARK 465 PHE A 61 REMARK 465 ILE A 62 REMARK 465 VAL A 63 REMARK 465 THR A 64 REMARK 465 ASP A 65 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 21 95.10 -45.80 REMARK 500 GLU A 30 113.72 -172.97 REMARK 500 GLU A 31 31.22 -166.03 REMARK 500 CYS A 32 -84.20 -154.05 REMARK 500 GLN A 34 51.87 -101.61 REMARK 500 ASN A 35 -23.23 -164.77 REMARK 500 LYS A 56 83.70 -153.28 REMARK 500 ARG B 9 108.53 -160.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 B 11 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GBQ RELATED DB: PDB DBREF 1GBQ A 1 62 UNP Q60631 GRB2_MOUSE 1 61 DBREF 1GBQ B 1 10 UNP Q62245 SOS1_MOUSE 1135 1144 SEQADV 1GBQ GLU A 60 UNP Q60631 TRP 60 CONFLICT SEQADV 1GBQ A UNP Q60631 PHE 62 DELETION SEQADV 1GBQ A UNP Q60631 GLY 63 DELETION SEQADV 1GBQ A UNP Q60631 LYS 64 DELETION SEQRES 1 A 74 GLY SER ARG ARG ALA SER VAL GLY SER MET GLU ALA ILE SEQRES 2 A 74 ALA LYS TYR ASP PHE LYS ALA THR ALA ASP ASP GLU LEU SEQRES 3 A 74 SER PHE LYS ARG GLY ASP ILE LEU LYS VAL LEU ASN GLU SEQRES 4 A 74 GLU CYS ASP GLN ASN TRP TYR LYS ALA GLU LEU ASN GLY SEQRES 5 A 74 LYS ASP GLY PHE ILE PRO LYS ASN TYR ILE GLU MET LYS SEQRES 6 A 74 PRO HIS PRO GLU PHE ILE VAL THR ASP SEQRES 1 B 12 ACE VAL PRO PRO PRO VAL PRO PRO ARG ARG ARG NH2 HET ACE B 0 6 HET NH2 B 11 3 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP FORMUL 2 ACE C2 H4 O FORMUL 2 NH2 H2 N HELIX 1 1 LYS A 50 TYR A 52 5 3 SHEET 1 A 3 ILE A 24 LYS A 26 0 SHEET 2 A 3 GLU A 2 ALA A 5 -1 N ALA A 3 O LEU A 25 SHEET 3 A 3 ILE A 53 LYS A 56 -1 N LYS A 56 O GLU A 2 SHEET 1 B 2 TRP A 36 LEU A 41 0 SHEET 2 B 2 LYS A 44 PRO A 49 -1 N ILE A 48 O TYR A 37 LINK C ACE B 0 N VAL B 1 1555 1555 1.35 LINK C ARG B 10 N NH2 B 11 1555 1555 1.35 SITE 1 AC2 1 ARG B 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000