PDB Short entry for 1GM5 HEADER HELICASE 11-SEP-01 1GM5 TITLE STRUCTURE OF RECG BOUND TO THREE-WAY DNA JUNCTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-(*CP*AP*GP*CP*TP*CP*CP*AP*TP*GP*AP*TP* COMPND 7 CP*AP*TP*TP*GP*GP*CP*A)-3'); COMPND 8 CHAIN: X; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-(*GP*CP*AP*GP*TP*GP*CP*TP*CP*GP*CP*AP* COMPND 11 TP*GP*GP*AP*GP*CP*TP*G)-3'); COMPND 12 CHAIN: Y; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: DNA (5'-(*GP*AP*GP*CP*AP*CP*TP*GP*C)-3'); COMPND 15 CHAIN: Z SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 MOL_ID: 4; SOURCE 13 SYNTHETIC: YES KEYWDS HELICASE, REPLICATION RESTART EXPDTA X-RAY DIFFRACTION AUTHOR M.R.SINGLETON,S.SCAIFE,D.B.WIGLEY REVDAT 3 24-FEB-09 1GM5 1 VERSN REVDAT 2 05-JUN-02 1GM5 1 ATOM REVDAT 1 03-OCT-01 1GM5 0 JRNL AUTH M.R.SINGLETON,S.SCAIFE,D.B.WIGLEY JRNL TITL STRUCTURAL ANALYSIS OF DNA REPLICATION FORK JRNL TITL 2 REVERSAL BY RECG JRNL REF CELL(CAMBRIDGE,MASS.) V. 107 79 2001 JRNL REFN ISSN 0092-8674 JRNL PMID 11595187 JRNL DOI 10.1016/S0092-8674(01)00501-3 REMARK 2 REMARK 2 RESOLUTION. 3.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 21822 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.275 REMARK 3 R VALUE (WORKING SET) : 0.272 REMARK 3 FREE R VALUE : 0.328 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1191 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1417 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.4040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5919 REMARK 3 NUCLEIC ACID ATOMS : 832 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.86000 REMARK 3 B22 (A**2) : 1.84000 REMARK 3 B33 (A**2) : -3.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.70000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.604 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.598 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.392 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.902 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6989 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9587 ; 2.607 ; 2.134 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 725 ; 9.181 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1209 ;30.826 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1027 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4890 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4771 ; 0.516 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 586 ; 0.365 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 125 ; 0.912 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.574 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3621 ;10.149 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5854 ;16.211 ; 6.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3368 ;17.804 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3732 ;24.785 ;10.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1GM5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-SEP-01. REMARK 100 THE PDBE ID CODE IS EBI-8554. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22945 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.85200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.30100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.85200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 72.30100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, X, Y, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 CYS A 3 REMARK 465 SER A 4 REMARK 465 ARG A 5 REMARK 465 TYR A 6 REMARK 465 GLY A 503 REMARK 465 VAL A 504 REMARK 465 LYS A 505 REMARK 465 GLN A 506 REMARK 465 ARG A 507 REMARK 465 GLU A 589 REMARK 465 GLU A 590 REMARK 465 SER A 591 REMARK 465 ASP A 592 REMARK 465 LYS A 593 REMARK 465 LEU A 594 REMARK 465 ASN A 595 REMARK 465 VAL A 596 REMARK 465 PRO A 612 REMARK 465 GLU A 613 REMARK 465 PHE A 614 REMARK 465 PHE A 730 REMARK 465 PHE A 731 REMARK 465 GLY A 732 REMARK 465 VAL A 733 REMARK 465 ALA A 756 REMARK 465 ARG A 757 REMARK 465 GLU A 758 REMARK 465 ASP A 759 REMARK 465 VAL A 760 REMARK 465 GLN A 761 REMARK 465 GLU A 762 REMARK 465 ILE A 763 REMARK 465 ASP A 764 REMARK 465 VAL A 765 REMARK 465 GLU A 766 REMARK 465 GLY A 767 REMARK 465 ILE A 768 REMARK 465 GLU A 769 REMARK 465 LEU A 770 REMARK 465 PRO A 771 REMARK 465 GLU A 772 REMARK 465 GLU A 773 REMARK 465 ILE A 774 REMARK 465 LYS A 775 REMARK 465 LEU A 776 REMARK 465 ILE A 777 REMARK 465 GLU A 778 REMARK 465 VAL A 779 REMARK 465 GLY A 780 REMARK 465 C X 13 REMARK 465 A X 14 REMARK 465 T X 15 REMARK 465 T X 16 REMARK 465 G X 17 REMARK 465 G X 18 REMARK 465 C X 19 REMARK 465 A X 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 C X 1 O5* REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 PHE A 7 - CD1 LEU A 11 2.07 REMARK 500 OE1 GLU A 24 - NZ LYS A 155 2.00 REMARK 500 O LEU A 33 - N ASN A 35 1.88 REMARK 500 CG2 VAL A 37 - CD1 ILE A 73 1.95 REMARK 500 OD2 ASP A 50 - NH2 ARG A 252 1.86 REMARK 500 O VAL A 70 - N GLU A 72 2.14 REMARK 500 O GLU A 72 - ND2 ASN A 75 1.92 REMARK 500 O SER A 88 - N MET A 91 2.16 REMARK 500 CE LYS A 128 - CE LYS A 132 2.10 REMARK 500 CE LYS A 128 - NZ LYS A 132 1.53 REMARK 500 O LEU A 139 - N LEU A 142 1.85 REMARK 500 OE1 GLU A 151 - NE ARG A 153 1.94 REMARK 500 OD2 ASP A 152 - NH1 ARG A 154 1.93 REMARK 500 O ARG A 153 - N LYS A 155 1.57 REMARK 500 O ARG A 154 - NE ARG A 252 2.06 REMARK 500 O SER A 176 - CA ALA A 190 1.89 REMARK 500 O ASP A 207 - N GLN A 210 2.01 REMARK 500 O TYR A 208 - N GLN A 210 1.56 REMARK 500 O THR A 211 - N GLN A 215 1.93 REMARK 500 OD1 ASN A 230 - CD2 TYR A 232 2.17 REMARK 500 OD1 ASN A 230 - CE2 TYR A 232 1.83 REMARK 500 OE1 GLU A 237 - NE2 HIS A 239 2.07 REMARK 500 O MET A 269 - CG2 ILE A 272 1.99 REMARK 500 O ILE A 292 - N LYS A 295 2.10 REMARK 500 CD ARG A 296 - CD ARG A 748 2.17 REMARK 500 NE ARG A 296 - CD ARG A 748 1.49 REMARK 500 NE ARG A 296 - NE ARG A 748 1.92 REMARK 500 CD1 LEU A 298 - N ARG A 323 2.17 REMARK 500 CD2 LEU A 298 - OE1 GLU A 322 1.90 REMARK 500 O VAL A 301 - N ALA A 304 2.13 REMARK 500 O VAL A 301 - N ASP A 303 2.14 REMARK 500 NH2 ARG A 323 - OE2 GLU A 327 1.87 REMARK 500 CE1 PHE A 336 - O TYR A 536 1.74 REMARK 500 NH2 ARG A 343 - ND2 ASN A 391 2.05 REMARK 500 OE2 GLU A 344 - NZ LYS A 388 1.94 REMARK 500 N GLU A 354 - OE1 GLU A 415 2.00 REMARK 500 CA GLU A 354 - OE1 GLU A 415 2.02 REMARK 500 O GLU A 354 - OE1 GLU A 415 2.05 REMARK 500 CB GLU A 354 - OE1 GLU A 415 2.08 REMARK 500 O GLN A 378 - OD1 ASN A 382 2.15 REMARK 500 CD GLU A 379 - CG2 VAL A 543 2.13 REMARK 500 OE1 GLU A 379 - CG2 VAL A 543 1.23 REMARK 500 CZ ARG A 381 - OD1 ASP A 412 1.72 REMARK 500 NH1 ARG A 381 - CG ASP A 412 1.89 REMARK 500 NH1 ARG A 381 - OD1 ASP A 412 1.70 REMARK 500 NH1 ARG A 381 - OD2 ASP A 412 1.66 REMARK 500 NH2 ARG A 381 - OD1 ASP A 412 1.48 REMARK 500 CA GLY A 396 - NZ LYS A 402 2.14 REMARK 500 C GLY A 396 - NZ LYS A 402 1.58 REMARK 500 O GLY A 396 - NZ LYS A 402 2.00 REMARK 500 REMARK 500 THIS ENTRY HAS 109 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 REMARK 500 CA THR A 8 NH1 ARG A 563 2556 1.52 REMARK 500 CB THR A 8 NH1 ARG A 563 2556 1.95 REMARK 500 CG2 THR A 8 NH1 ARG A 563 2556 1.92 REMARK 500 CG PHE A 12 NH2 ARG A 563 2556 2.14 REMARK 500 CD1 PHE A 12 NH2 ARG A 563 2556 1.30 REMARK 500 CE1 PHE A 12 NE ARG A 563 2556 1.95 REMARK 500 CE1 PHE A 12 CZ ARG A 563 2556 1.28 REMARK 500 CE1 PHE A 12 NH2 ARG A 563 2556 0.56 REMARK 500 CE2 PHE A 12 NH2 ARG A 563 2556 2.17 REMARK 500 CZ PHE A 12 CZ ARG A 563 2556 1.93 REMARK 500 CZ PHE A 12 NH2 ARG A 563 2556 1.36 REMARK 500 NE ARG A 40 CZ ARG A 40 2557 2.01 REMARK 500 NE ARG A 40 NH1 ARG A 40 2557 1.02 REMARK 500 CZ ARG A 40 NE ARG A 40 2557 2.01 REMARK 500 CZ ARG A 40 CZ ARG A 40 2557 1.13 REMARK 500 CZ ARG A 40 NH1 ARG A 40 2557 0.36 REMARK 500 NH1 ARG A 40 NH2 ARG A 40 2557 1.50 REMARK 500 NH1 ARG A 40 NE ARG A 40 2557 1.02 REMARK 500 NH1 ARG A 40 CZ ARG A 40 2557 0.36 REMARK 500 NH1 ARG A 40 NH1 ARG A 40 2557 1.55 REMARK 500 NH2 ARG A 40 NH1 ARG A 40 2557 1.50 REMARK 500 CG GLU A 48 NH1 ARG A 577 2556 2.09 REMARK 500 CG ASN A 469 OP1 DT Y 13 4556 1.76 REMARK 500 OD1 ASN A 469 O3' DA Y 12 4556 1.32 REMARK 500 OD1 ASN A 469 P DT Y 13 4556 1.38 REMARK 500 OD1 ASN A 469 OP1 DT Y 13 4556 1.50 REMARK 500 ND2 ASN A 469 OP1 DT Y 13 4556 1.73 REMARK 500 NE ARG A 563 CE1 PHE A 12 2556 1.95 REMARK 500 CZ ARG A 563 CE1 PHE A 12 2556 1.28 REMARK 500 CZ ARG A 563 CZ PHE A 12 2556 1.93 REMARK 500 NH1 ARG A 563 CB THR A 8 2556 1.95 REMARK 500 NH1 ARG A 563 CG2 THR A 8 2556 1.92 REMARK 500 NH1 ARG A 563 CA THR A 8 2556 1.52 REMARK 500 NH2 ARG A 563 CG PHE A 12 2556 2.14 REMARK 500 NH2 ARG A 563 CD1 PHE A 12 2556 1.30 REMARK 500 NH2 ARG A 563 CE1 PHE A 12 2556 0.56 REMARK 500 NH2 ARG A 563 CE2 PHE A 12 2556 2.17 REMARK 500 NH2 ARG A 563 CZ PHE A 12 2556 1.36 REMARK 500 NH1 ARG A 577 CG GLU A 48 2556 2.09 REMARK 500 O3' DA Y 12 OD1 ASN A 469 4546 1.32 REMARK 500 P DT Y 13 OD1 ASN A 469 4546 1.38 REMARK 500 OP1 DT Y 13 CG ASN A 469 4546 1.76 REMARK 500 OP1 DT Y 13 ND2 ASN A 469 4546 1.73 REMARK 500 OP1 DT Y 13 OD1 ASN A 469 4546 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 55 CD GLU A 55 OE1 0.091 REMARK 500 GLU A 55 CG GLU A 55 CD 0.091 REMARK 500 GLU A 553 CD GLU A 553 OE2 0.074 REMARK 500 DT Y 5 C3' DT Y 5 O3' -0.043 REMARK 500 DC Y 9 N1 DC Y 9 C6 -0.037 REMARK 500 DG Y 10 C2 DG Y 10 N3 0.050 REMARK 500 DG Y 10 C3' DG Y 10 O3' -0.057 REMARK 500 REMARK 500 THIS ENTRY HAS 7 BOND DEVIATIONS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 21 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 ASP A 141 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 161 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 THR A 233 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 TYR A 236 N - CA - C ANGL. DEV. = 18.3 DEGREES REMARK 500 GLU A 249 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 ARG A 270 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 THR A 313 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 MET A 390 N - CA - C ANGL. DEV. = -20.1 DEGREES REMARK 500 PHE A 444 N - CA - C ANGL. DEV. = -19.7 DEGREES REMARK 500 ASP A 497 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 518 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 538 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 VAL A 541 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG A 551 CA - CB - CG ANGL. DEV. = -14.9 DEGREES REMARK 500 ARG A 551 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU A 623 N - CA - C ANGL. DEV. = -25.3 DEGREES REMARK 500 ARG A 630 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 LEU A 633 CA - CB - CG ANGL. DEV. = -16.0 DEGREES REMARK 500 GLU A 637 N - CA - C ANGL. DEV. = -20.0 DEGREES REMARK 500 ASP A 654 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 LEU A 738 N - CA - C ANGL. DEV. = 19.2 DEGREES REMARK 500 LYS A 742 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 ASP A 745 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 749 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 DA X 2 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC X 4 C5' - C4' - C3' ANGL. DEV. = -7.7 DEGREES REMARK 500 DT X 5 C5 - C4 - O4 ANGL. DEV. = -4.8 DEGREES REMARK 500 DT X 5 C5' - C4' - O4' ANGL. DEV. = -7.3 DEGREES REMARK 500 DT X 5 N3 - C4 - O4 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC X 7 O4' - C1' - N1 ANGL. DEV. = -3.1 DEGREES REMARK 500 DA X 8 O5' - C5' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DA X 8 O3' - P - OP1 ANGL. DEV. = -8.1 DEGREES REMARK 500 DA X 8 O3' - P - OP2 ANGL. DEV. = -8.1 DEGREES REMARK 500 DT X 9 C5 - C4 - O4 ANGL. DEV. = -5.7 DEGREES REMARK 500 DT X 9 N3 - C4 - O4 ANGL. DEV. = 5.0 DEGREES REMARK 500 DT X 9 O4' - C1' - C2' ANGL. DEV. = -4.2 DEGREES REMARK 500 DT X 9 O4' - C1' - N1 ANGL. DEV. = -4.5 DEGREES REMARK 500 DT X 9 O5' - C5' - C4' ANGL. DEV. = -8.0 DEGREES REMARK 500 DG X 10 C5 - C6 - O6 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG X 10 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 DA X 11 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA X 11 O4' - C4' - C3' ANGL. DEV. = -4.7 DEGREES REMARK 500 DG Y 1 O4' - C1' - N9 ANGL. DEV. = -2.3 DEGREES REMARK 500 DG Y 1 O5' - C5' - C4' ANGL. DEV. = -7.1 DEGREES REMARK 500 DC Y 2 C3' - C2' - C1' ANGL. DEV. = -8.1 DEGREES REMARK 500 DC Y 2 O4' - C1' - C2' ANGL. DEV. = -7.0 DEGREES REMARK 500 DC Y 2 O4' - C1' - N1 ANGL. DEV. = -2.8 DEGREES REMARK 500 DC Y 2 O4' - C4' - C3' ANGL. DEV. = -4.4 DEGREES REMARK 500 DC Y 2 P - O5' - C5' ANGL. DEV. = -12.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 175 ANGLE DEVIATIONS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 8 -83.64 -24.79 REMARK 500 SER A 10 8.83 -49.55 REMARK 500 LEU A 11 -1.69 -145.92 REMARK 500 GLU A 16 61.89 -69.55 REMARK 500 ALA A 17 38.85 -146.59 REMARK 500 LEU A 18 -61.75 -121.55 REMARK 500 THR A 20 37.43 93.75 REMARK 500 PHE A 25 -79.68 -46.07 REMARK 500 ASN A 27 -91.05 -27.19 REMARK 500 MET A 32 -71.47 -39.43 REMARK 500 LYS A 34 -3.23 -37.53 REMARK 500 ASN A 35 -102.26 -142.82 REMARK 500 VAL A 37 -110.37 -11.81 REMARK 500 ASN A 38 46.04 105.98 REMARK 500 THR A 39 -61.19 -10.75 REMARK 500 ARG A 41 -84.53 -52.97 REMARK 500 ILE A 42 -67.73 -14.68 REMARK 500 ASP A 51 149.60 145.67 REMARK 500 LYS A 57 -72.89 -59.04 REMARK 500 LEU A 59 -43.74 -27.91 REMARK 500 LEU A 63 -70.36 -64.21 REMARK 500 GLN A 64 -69.52 -27.50 REMARK 500 ALA A 65 -64.39 -28.23 REMARK 500 PHE A 66 -79.71 -52.05 REMARK 500 LYS A 71 -24.34 -28.76 REMARK 500 ILE A 73 -70.52 -22.03 REMARK 500 ASN A 75 50.61 -65.49 REMARK 500 GLU A 78 -82.53 7.42 REMARK 500 ARG A 80 -32.99 -37.92 REMARK 500 ARG A 82 -83.76 -60.83 REMARK 500 ILE A 85 -73.54 -69.22 REMARK 500 SER A 88 -80.14 -61.14 REMARK 500 LEU A 89 -47.30 -24.12 REMARK 500 PHE A 99 -61.31 -106.69 REMARK 500 LEU A 100 -7.34 -53.54 REMARK 500 TYR A 103 114.49 -35.79 REMARK 500 GLU A 109 135.82 147.97 REMARK 500 ASP A 112 47.06 -149.26 REMARK 500 LEU A 113 -159.66 -135.33 REMARK 500 ILE A 117 4.29 44.01 REMARK 500 ALA A 120 155.53 -38.70 REMARK 500 PRO A 125 -71.99 -52.50 REMARK 500 GLU A 137 -167.47 -101.55 REMARK 500 THR A 138 -153.07 57.15 REMARK 500 LEU A 139 -41.13 -137.29 REMARK 500 GLU A 144 4.12 -59.34 REMARK 500 ASP A 149 -175.20 -178.20 REMARK 500 ARG A 153 -61.51 -155.48 REMARK 500 ARG A 154 -62.20 23.59 REMARK 500 ASN A 160 61.85 100.84 REMARK 500 ASP A 161 7.41 168.97 REMARK 500 LYS A 173 -166.89 -67.67 REMARK 500 PHE A 182 -90.82 -127.87 REMARK 500 GLN A 183 -92.23 -124.73 REMARK 500 MET A 185 140.22 -171.45 REMARK 500 PHE A 204 -111.47 -91.89 REMARK 500 TYR A 208 -86.61 -28.64 REMARK 500 LEU A 209 -43.79 4.08 REMARK 500 GLN A 215 -10.77 -47.18 REMARK 500 LEU A 216 -56.90 -124.17 REMARK 500 ASN A 230 -160.34 -123.20 REMARK 500 ALA A 231 45.66 98.56 REMARK 500 TYR A 232 89.05 -51.37 REMARK 500 GLN A 235 102.04 27.73 REMARK 500 TYR A 236 -29.77 -9.26 REMARK 500 GLU A 237 119.25 52.53 REMARK 500 ASN A 240 12.36 87.89 REMARK 500 PRO A 245 -124.94 -53.66 REMARK 500 LYS A 246 -123.48 -176.15 REMARK 500 VAL A 251 14.61 -152.94 REMARK 500 ARG A 252 55.17 -107.83 REMARK 500 LEU A 260 -168.42 -117.38 REMARK 500 THR A 261 105.26 -174.14 REMARK 500 GLN A 268 -77.10 -65.75 REMARK 500 SER A 279 -73.84 -35.48 REMARK 500 CYS A 281 -65.62 -13.85 REMARK 500 CYS A 282 -39.93 -35.21 REMARK 500 LEU A 284 107.72 -164.77 REMARK 500 GLU A 286 159.65 -42.96 REMARK 500 ILE A 292 -73.48 -72.33 REMARK 500 LEU A 293 -67.49 -16.53 REMARK 500 LYS A 297 11.28 88.70 REMARK 500 VAL A 301 -91.49 -152.34 REMARK 500 LYS A 302 -77.52 -7.84 REMARK 500 LYS A 312 31.17 -143.02 REMARK 500 THR A 313 134.71 -172.01 REMARK 500 HIS A 316 -86.30 -38.01 REMARK 500 LEU A 317 -55.75 -26.27 REMARK 500 GLU A 318 -72.91 -42.61 REMARK 500 LYS A 319 -9.67 -46.27 REMARK 500 VAL A 331 -32.60 -39.56 REMARK 500 LEU A 332 -72.95 -83.94 REMARK 500 PHE A 336 -74.82 -64.58 REMARK 500 LYS A 345 -87.68 -56.96 REMARK 500 LYS A 356 -82.73 -31.52 REMARK 500 LEU A 357 -76.54 -37.16 REMARK 500 GLU A 360 -70.65 -67.68 REMARK 500 PRO A 366 -84.08 -75.40 REMARK 500 PHE A 367 175.93 -41.69 REMARK 500 LYS A 368 -78.48 -65.34 REMARK 500 LEU A 369 170.95 126.41 REMARK 500 ARG A 381 -74.43 -28.93 REMARK 500 GLU A 387 3.56 -56.60 REMARK 500 PRO A 389 -177.25 -63.39 REMARK 500 ARG A 392 165.28 -47.17 REMARK 500 VAL A 404 -84.40 -25.08 REMARK 500 VAL A 405 -62.04 -23.43 REMARK 500 TYR A 434 -75.34 -34.32 REMARK 500 ARG A 435 -60.53 -20.79 REMARK 500 VAL A 438 -67.96 -92.58 REMARK 500 SER A 440 -71.84 -58.71 REMARK 500 PHE A 441 -5.25 -44.39 REMARK 500 SER A 442 -1.84 29.66 REMARK 500 LYS A 443 174.80 101.93 REMARK 500 PHE A 444 -58.07 -176.90 REMARK 500 ASN A 445 23.77 149.59 REMARK 500 SER A 458 -71.67 -51.60 REMARK 500 GLU A 459 -37.50 -36.47 REMARK 500 LYS A 464 -74.10 -26.16 REMARK 500 ARG A 468 -19.56 -43.81 REMARK 500 HIS A 479 28.66 -72.93 REMARK 500 LEU A 481 -81.82 -36.84 REMARK 500 ILE A 482 -4.33 -46.68 REMARK 500 ASP A 485 79.27 94.98 REMARK 500 PHE A 488 139.95 174.85 REMARK 500 LEU A 493 159.86 165.57 REMARK 500 GLU A 498 -149.63 76.37 REMARK 500 ARG A 501 -133.89 73.32 REMARK 500 ASN A 512 -135.79 -61.02 REMARK 500 ASP A 518 108.58 -46.09 REMARK 500 PRO A 526 176.29 -43.45 REMARK 500 LEU A 533 10.75 -67.57 REMARK 500 ALA A 534 -30.89 -133.48 REMARK 500 ASP A 538 -18.73 -27.50 REMARK 500 ASP A 540 -37.49 -13.63 REMARK 500 GLN A 555 96.77 -64.66 REMARK 500 MET A 561 -125.01 -64.56 REMARK 500 ASP A 562 -68.62 26.87 REMARK 500 ARG A 563 24.43 -61.84 REMARK 500 TYR A 568 -54.28 -24.14 REMARK 500 GLN A 573 -93.67 -69.04 REMARK 500 GLU A 574 -34.76 -28.52 REMARK 500 PRO A 586 -147.90 -50.62 REMARK 500 TYR A 603 -62.47 -91.51 REMARK 500 VAL A 610 -22.80 -24.79 REMARK 500 LEU A 618 -77.44 -111.83 REMARK 500 MET A 619 70.14 72.35 REMARK 500 LEU A 623 40.38 175.93 REMARK 500 GLU A 627 74.34 -104.06 REMARK 500 ARG A 630 -56.87 -29.70 REMARK 500 ALA A 636 30.31 -81.12 REMARK 500 ASP A 641 -52.50 -25.53 REMARK 500 VAL A 644 112.47 -161.76 REMARK 500 SER A 645 -140.01 -71.18 REMARK 500 THR A 646 107.70 88.82 REMARK 500 THR A 647 35.86 110.61 REMARK 500 VAL A 648 103.02 -1.91 REMARK 500 ALA A 658 96.75 -61.20 REMARK 500 ASN A 665 57.48 10.45 REMARK 500 PRO A 666 -159.90 -69.05 REMARK 500 GLU A 667 -19.23 64.26 REMARK 500 ALA A 672 -58.92 164.68 REMARK 500 GLN A 676 -81.30 -19.86 REMARK 500 ARG A 680 7.67 -55.46 REMARK 500 GLN A 686 -16.18 59.52 REMARK 500 GLU A 687 61.99 21.93 REMARK 500 VAL A 693 132.17 -34.76 REMARK 500 ASP A 696 -78.39 -151.64 REMARK 500 GLU A 699 -81.87 -31.96 REMARK 500 ALA A 701 -76.16 -59.51 REMARK 500 THR A 712 -10.25 -42.34 REMARK 500 THR A 724 -99.45 -81.38 REMARK 500 GLN A 735 107.42 70.58 REMARK 500 PHE A 741 85.28 21.46 REMARK 500 ALA A 744 -15.55 -38.32 REMARK 500 ASP A 749 -77.16 -62.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 444 ASN A 445 -143.68 REMARK 500 ALA A 449 LEU A 450 148.69 REMARK 500 GLN A 471 ILE A 472 149.33 REMARK 500 GLU A 546 MET A 547 -133.98 REMARK 500 SER A 607 LYS A 608 133.44 REMARK 500 LEU A 623 SER A 624 -146.28 REMARK 500 GLU A 626 GLU A 627 149.11 REMARK 500 VAL A 651 GLY A 652 -146.58 REMARK 500 ILE A 653 ASP A 654 -143.16 REMARK 500 GLY A 684 GLY A 685 135.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 112 24.2 L L OUTSIDE RANGE REMARK 500 TYR A 236 22.4 L L OUTSIDE RANGE REMARK 500 PRO A 245 45.8 L L OUTSIDE RANGE REMARK 500 LEU A 298 22.2 L L OUTSIDE RANGE REMARK 500 THR A 313 45.4 L L OUTSIDE RANGE REMARK 500 LEU A 623 49.6 L L OUTSIDE RANGE REMARK 500 GLN A 625 45.3 L L OUTSIDE RANGE REMARK 500 GLU A 637 45.6 L L OUTSIDE RANGE REMARK 500 LEU A 738 22.6 L L OUTSIDE RANGE REMARK 500 PHE A 741 17.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1757 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A1756 DBREF 1GM5 A 1 780 UNP Q9WY48 Q9WY48 1 780 DBREF 1GM5 X 1 12 PDB 1GM5 1GM5 1 12 DBREF 1GM5 Y 1 20 PDB 1GM5 1GM5 1 20 DBREF 1GM5 Z 1 9 PDB 1GM5 1GM5 1 9 SEQRES 1 X 20 DC DA DG DC DT DC DC DA DT DG DA DT DC SEQRES 2 X 20 DA DT DT DG DG DC DA SEQRES 1 Y 20 DG DC DA DG DT DG DC DT DC DG DC DA DT SEQRES 2 Y 20 DG DG DA DG DC DT DG SEQRES 1 Z 9 DG DA DG DC DA DC DT DG DC SEQRES 1 A 780 MET LEU CYS SER ARG TYR PHE THR SER SER LEU PHE LEU SEQRES 2 A 780 TRP GLY GLU ALA LEU PRO THR LEU LEU GLU GLU PHE LEU SEQRES 3 A 780 ASN GLU VAL GLU LYS MET LEU LYS ASN GLN VAL ASN THR SEQRES 4 A 780 ARG ARG ILE HIS GLN LEU LEU LYS GLU LEU ASP ASP PRO SEQRES 5 A 780 LEU LEU GLU ASN LYS ASP LEU GLU GLU LYS LEU GLN ALA SEQRES 6 A 780 PHE LEU ASP TYR VAL LYS GLU ILE PRO ASN LEU PRO GLU SEQRES 7 A 780 ALA ARG LYS ARG TYR ARG ILE GLN LYS SER LEU GLU MET SEQRES 8 A 780 ILE GLU LYS LEU ARG SER TRP PHE LEU ILE ASP TYR LEU SEQRES 9 A 780 GLU CYS SER GLY GLU GLU VAL ASP LEU SER THR ASP ILE SEQRES 10 A 780 GLN TYR ALA LYS GLY VAL GLY PRO ASN ARG LYS LYS LYS SEQRES 11 A 780 LEU LYS LYS LEU GLY ILE GLU THR LEU ARG ASP LEU LEU SEQRES 12 A 780 GLU PHE PHE PRO ARG ASP TYR GLU ASP ARG ARG LYS ILE SEQRES 13 A 780 PHE LYS LEU ASN ASP LEU LEU PRO GLY GLU LYS VAL THR SEQRES 14 A 780 THR GLN GLY LYS ILE VAL SER VAL GLU THR LYS LYS PHE SEQRES 15 A 780 GLN ASN MET ASN ILE LEU THR ALA VAL LEU SER ASP GLY SEQRES 16 A 780 LEU VAL HIS VAL PRO LEU LYS TRP PHE ASN GLN ASP TYR SEQRES 17 A 780 LEU GLN THR TYR LEU LYS GLN LEU THR GLY LYS GLU VAL SEQRES 18 A 780 PHE VAL THR GLY THR VAL LYS SER ASN ALA TYR THR GLY SEQRES 19 A 780 GLN TYR GLU ILE HIS ASN ALA GLU VAL THR PRO LYS GLU SEQRES 20 A 780 GLY GLU TYR VAL ARG ARG ILE LEU PRO ILE TYR ARG LEU SEQRES 21 A 780 THR SER GLY ILE SER GLN LYS GLN MET ARG LYS ILE PHE SEQRES 22 A 780 GLU GLU ASN ILE PRO SER LEU CYS CYS SER LEU LYS GLU SEQRES 23 A 780 THR LEU PRO GLU ARG ILE LEU GLU LYS ARG LYS LEU LEU SEQRES 24 A 780 GLY VAL LYS ASP ALA TYR TYR GLY MET HIS PHE PRO LYS SEQRES 25 A 780 THR PHE TYR HIS LEU GLU LYS ALA ARG GLU ARG LEU ALA SEQRES 26 A 780 TYR GLU GLU LEU PHE VAL LEU GLN LEU ALA PHE GLN LYS SEQRES 27 A 780 ILE ARG LYS GLU ARG GLU LYS HIS GLY GLY ILE PRO LYS SEQRES 28 A 780 LYS ILE GLU GLY LYS LEU ALA GLU GLU PHE ILE LYS SER SEQRES 29 A 780 LEU PRO PHE LYS LEU THR ASN ALA GLN LYS ARG ALA HIS SEQRES 30 A 780 GLN GLU ILE ARG ASN ASP MET ILE SER GLU LYS PRO MET SEQRES 31 A 780 ASN ARG LEU LEU GLN GLY ASP VAL GLY SER GLY LYS THR SEQRES 32 A 780 VAL VAL ALA GLN LEU ALA ILE LEU ASP ASN TYR GLU ALA SEQRES 33 A 780 GLY PHE GLN THR ALA PHE MET VAL PRO THR SER ILE LEU SEQRES 34 A 780 ALA ILE GLN HIS TYR ARG ARG THR VAL GLU SER PHE SER SEQRES 35 A 780 LYS PHE ASN ILE HIS VAL ALA LEU LEU ILE GLY ALA THR SEQRES 36 A 780 THR PRO SER GLU LYS GLU LYS ILE LYS SER GLY LEU ARG SEQRES 37 A 780 ASN GLY GLN ILE ASP VAL VAL ILE GLY THR HIS ALA LEU SEQRES 38 A 780 ILE GLN GLU ASP VAL HIS PHE LYS ASN LEU GLY LEU VAL SEQRES 39 A 780 ILE ILE ASP GLU GLN HIS ARG PHE GLY VAL LYS GLN ARG SEQRES 40 A 780 GLU ALA LEU MET ASN LYS GLY LYS MET VAL ASP THR LEU SEQRES 41 A 780 VAL MET SER ALA THR PRO ILE PRO ARG SER MET ALA LEU SEQRES 42 A 780 ALA PHE TYR GLY ASP LEU ASP VAL THR VAL ILE ASP GLU SEQRES 43 A 780 MET PRO PRO GLY ARG LYS GLU VAL GLN THR MET LEU VAL SEQRES 44 A 780 PRO MET ASP ARG VAL ASN GLU VAL TYR GLU PHE VAL ARG SEQRES 45 A 780 GLN GLU VAL MET ARG GLY GLY GLN ALA PHE ILE VAL TYR SEQRES 46 A 780 PRO LEU ILE GLU GLU SER ASP LYS LEU ASN VAL LYS SER SEQRES 47 A 780 ALA VAL GLU MET TYR GLU TYR LEU SER LYS GLU VAL PHE SEQRES 48 A 780 PRO GLU PHE LYS LEU GLY LEU MET HIS GLY ARG LEU SER SEQRES 49 A 780 GLN GLU GLU LYS ASP ARG VAL MET LEU GLU PHE ALA GLU SEQRES 50 A 780 GLY ARG TYR ASP ILE LEU VAL SER THR THR VAL ILE GLU SEQRES 51 A 780 VAL GLY ILE ASP VAL PRO ARG ALA ASN VAL MET VAL ILE SEQRES 52 A 780 GLU ASN PRO GLU ARG PHE GLY LEU ALA GLN LEU HIS GLN SEQRES 53 A 780 LEU ARG GLY ARG VAL GLY ARG GLY GLY GLN GLU ALA TYR SEQRES 54 A 780 CYS PHE LEU VAL VAL GLY ASP VAL GLY GLU GLU ALA MET SEQRES 55 A 780 GLU ARG LEU ARG PHE PHE THR LEU ASN THR ASP GLY PHE SEQRES 56 A 780 LYS ILE ALA GLU TYR ASP LEU LYS THR ARG GLY PRO GLY SEQRES 57 A 780 GLU PHE PHE GLY VAL LYS GLN HIS GLY LEU SER GLY PHE SEQRES 58 A 780 LYS VAL ALA ASP LEU TYR ARG ASP LEU LYS LEU LEU GLU SEQRES 59 A 780 TRP ALA ARG GLU ASP VAL GLN GLU ILE ASP VAL GLU GLY SEQRES 60 A 780 ILE GLU LEU PRO GLU GLU ILE LYS LEU ILE GLU VAL GLY HET MG A1757 1 HET ADP A1756 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 5 MG MG 2+ FORMUL 6 ADP C10 H15 N5 O10 P2 HELIX 1 1 THR A 8 SER A 10 5 3 HELIX 2 2 LEU A 11 GLU A 16 1 6 HELIX 3 3 LEU A 21 LYS A 34 1 14 HELIX 4 4 ARG A 41 LEU A 49 1 9 HELIX 5 5 ASP A 51 GLU A 55 5 5 HELIX 6 6 ASN A 56 LYS A 71 1 16 HELIX 7 7 PRO A 77 LEU A 100 1 24 HELIX 8 8 GLY A 124 LYS A 133 1 10 HELIX 9 9 LEU A 139 LEU A 143 5 5 HELIX 10 10 LEU A 209 GLN A 215 1 7 HELIX 11 11 SER A 265 SER A 283 1 19 HELIX 12 12 PRO A 289 LYS A 297 1 9 HELIX 13 13 VAL A 301 PHE A 310 1 10 HELIX 14 14 THR A 313 GLY A 347 1 35 HELIX 15 15 GLY A 355 LEU A 365 1 11 HELIX 16 16 THR A 370 SER A 386 1 17 HELIX 17 17 GLY A 401 GLY A 417 1 17 HELIX 18 18 THR A 426 SER A 442 1 17 HELIX 19 19 THR A 456 ASN A 469 1 14 HELIX 20 20 ALA A 480 ASP A 485 1 6 HELIX 21 21 PRO A 528 TYR A 536 1 9 HELIX 22 22 ARG A 563 VAL A 575 1 13 HELIX 23 23 LYS A 597 TYR A 605 1 9 HELIX 24 24 LEU A 606 GLU A 609 5 4 HELIX 25 25 LYS A 628 ALA A 636 1 9 HELIX 26 26 ALA A 672 ARG A 680 1 9 HELIX 27 27 GLY A 698 LEU A 710 1 13 HELIX 28 28 GLY A 714 THR A 724 1 11 HELIX 29 29 VAL A 743 LEU A 753 1 11 SHEET 1 AA 2 ASP A 149 GLU A 151 0 SHEET 2 AA 2 LEU A 255 ILE A 257 -1 O LEU A 255 N GLU A 151 SHEET 1 AB 3 THR A 169 GLY A 172 0 SHEET 2 AB 3 VAL A 221 THR A 224 -1 O VAL A 221 N GLY A 172 SHEET 3 AB 3 GLU A 242 THR A 244 -1 O GLU A 242 N THR A 224 SHEET 1 AC 4 GLU A 178 LYS A 181 0 SHEET 2 AC 4 ASN A 186 LEU A 192 -1 O ILE A 187 N LYS A 180 SHEET 3 AC 4 VAL A 199 TRP A 203 -1 O VAL A 199 N LEU A 192 SHEET 4 AC 4 ILE A 238 HIS A 239 1 O ILE A 238 N LYS A 202 SHEET 1 AD 7 VAL A 448 LEU A 450 0 SHEET 2 AD 7 VAL A 474 GLY A 477 1 O VAL A 474 N ALA A 449 SHEET 3 AD 7 THR A 420 MET A 423 1 O THR A 420 N VAL A 475 SHEET 4 AD 7 LEU A 493 ASP A 497 1 O LEU A 493 N ALA A 421 SHEET 5 AD 7 THR A 519 SER A 523 1 O LEU A 520 N ILE A 496 SHEET 6 AD 7 LEU A 393 GLN A 395 1 O LEU A 394 N SER A 523 SHEET 7 AD 7 THR A 542 ILE A 544 1 O VAL A 543 N GLN A 395 SHEET 1 AE 3 GLN A 555 THR A 556 0 SHEET 2 AE 3 TYR A 689 PHE A 691 1 N CYS A 690 O GLN A 555 SHEET 3 AE 3 VAL A 660 VAL A 662 1 O MET A 661 N PHE A 691 SSBOND 1 CYS A 106 CYS A 282 1555 1555 2.02 LINK MG MG A1757 O3B ADP A1756 1555 1555 3.15 SITE 1 AC1 3 THR A 403 MET A 522 ADP A1756 SITE 1 AC2 11 PHE A 367 LEU A 369 GLN A 373 GLY A 399 SITE 2 AC2 11 SER A 400 GLY A 401 LYS A 402 THR A 403 SITE 3 AC2 11 VAL A 404 ARG A 436 MG A1757 CRYST1 133.704 144.602 84.023 90.00 113.82 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007479 0.000000 0.003302 0.00000 SCALE2 0.000000 0.006915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013010 0.00000