PDB Short entry for 1GPJ HEADER REDUCTASE 05-NOV-01 1GPJ TITLE GLUTAMYL-TRNA REDUCTASE FROM METHANOPYRUS KANDLERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMYL-TRNA REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WHOLE MOLECULE, RESIDUES 1-404; COMPND 5 SYNONYM: GLUTR; COMPND 6 EC: 1.2.1.70; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOPYRUS KANDLERI; SOURCE 3 ORGANISM_TAXID: 2320; SOURCE 4 GENE: HEMA, MK0200; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 OTHER_DETAILS: DSM 6324, GERMAN COLLECTION OF MICROORGANISMS (DSM) KEYWDS REDUCTASE, TRNA-DEPENDENT TETRAPYRROLE BIOSYNTHESIS, GLUTAMYL TRNA- KEYWDS 2 REDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.MOSER,W.-D.SCHUBERT,V.BEIER,I.BRINGEMEIER,D.JAHN,D.W.HEINZ REVDAT 6 15-MAY-19 1GPJ 1 REMARK REVDAT 5 08-MAY-19 1GPJ 1 REMARK LINK REVDAT 4 07-NOV-18 1GPJ 1 COMPND SOURCE JRNL DBREF REVDAT 3 24-FEB-09 1GPJ 1 VERSN REVDAT 2 07-JAN-02 1GPJ 1 TITLE COMPND REMARK SEQADV REVDAT 2 2 1 SEQRES HET HETNAM HETSYN REVDAT 2 3 1 FORMUL HELIX SITE ATOM REVDAT 2 4 1 TER HETATM CONECT REVDAT 1 04-JAN-02 1GPJ 0 JRNL AUTH J.MOSER,W.D.SCHUBERT,V.BEIER,I.BRINGEMEIER,D.JAHN,D.W.HEINZ JRNL TITL V-SHAPED STRUCTURE OF GLUTAMYL-TRNA REDUCTASE, THE FIRST JRNL TITL 2 ENZYME OF TRNA-DEPENDENT TETRAPYRROLE BIOSYNTHESIS. JRNL REF EMBO J. V. 20 6583 2001 JRNL REFN ISSN 0261-4189 JRNL PMID 11726494 JRNL DOI 10.1093/EMBOJ/20.23.6583 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 30507 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1641 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3148 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 353 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.199 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 356-360 ARE NOT VISIBLE AND REMARK 3 ARE NOT MODELLED. NEIGBOURING REGIONS AS WELL AS RESIDUES 384- REMARK 3 390 HAVE POORLY DEFINED STEREOCHEMISTY. REMARK 4 REMARK 4 1GPJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-NOV-01. REMARK 100 THE DEPOSITION ID IS D_1290008682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32681 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 30.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.32400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE, SHARP, SOLOMON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: METHOD: HANGING DROP, TEMP.: 4C, REMARK 280 PROTEIN CONCENTRATION: 9.8 MG/ML, PRECIPITANT: 30 MPD, BUFFER: REMARK 280 100MM HEPES PH 7.5, SALT: 200MM NACL, 200MM NACITRATE, 2MM MGCL2, REMARK 280 PH 7.50, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.13350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.32500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.13350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.32500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 78.26700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 98.65000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2021 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2127 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 356 REMARK 465 ASP A 357 REMARK 465 PRO A 358 REMARK 465 GLU A 359 REMARK 465 ASN A 360 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 79 OG REMARK 470 LEU A 346 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 223 O HOH A 2210 1.84 REMARK 500 NH2 ARG A 329 O HOH A 2312 1.87 REMARK 500 OE1 GLU A 18 NZ LYS A 21 2.08 REMARK 500 O HOH A 2318 O HOH A 2319 2.09 REMARK 500 NZ LYS A 124 O HOH A 2132 2.11 REMARK 500 O LEU A 402 O HOH A 2343 2.13 REMARK 500 NZ LYS A 336 OE2 GLU A 340 2.13 REMARK 500 N ARG A 390 OG SER A 393 2.15 REMARK 500 OE1 GLU A 345 O HOH A 2320 2.18 REMARK 500 O ALA A 391 N ALA A 395 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 352 CD2 LEU A 362 2665 1.55 REMARK 500 NH2 ARG A 352 CG LEU A 362 2665 1.63 REMARK 500 NH2 ARG A 352 CD1 LEU A 362 2665 1.95 REMARK 500 CZ ARG A 352 CD2 LEU A 362 2665 2.09 REMARK 500 NH1 ARG A 352 CD2 LEU A 362 2665 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 59 N - CA - C ANGL. DEV. = 18.3 DEGREES REMARK 500 ASP A 188 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 223 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 288 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 LEU A 350 CA - CB - CG ANGL. DEV. = 20.5 DEGREES REMARK 500 LEU A 353 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 VAL A 361 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 VAL A 361 CA - C - O ANGL. DEV. = -17.5 DEGREES REMARK 500 VAL A 361 CA - C - N ANGL. DEV. = 25.2 DEGREES REMARK 500 VAL A 361 O - C - N ANGL. DEV. = -16.1 DEGREES REMARK 500 GLN A 363 N - CA - C ANGL. DEV. = 24.6 DEGREES REMARK 500 ASP A 364 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 372 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 372 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 MET A 382 CA - C - N ANGL. DEV. = 14.4 DEGREES REMARK 500 GLU A 383 C - N - CA ANGL. DEV. = 21.4 DEGREES REMARK 500 GLU A 383 CB - CA - C ANGL. DEV. = 13.0 DEGREES REMARK 500 GLU A 383 N - CA - CB ANGL. DEV. = 14.6 DEGREES REMARK 500 LEU A 384 CA - CB - CG ANGL. DEV. = -18.6 DEGREES REMARK 500 PRO A 385 N - CA - C ANGL. DEV. = 30.9 DEGREES REMARK 500 TYR A 388 CB - CA - C ANGL. DEV. = -17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 -19.38 -26.47 REMARK 500 VAL A 16 -16.36 -45.62 REMARK 500 VAL A 16 -17.29 -44.78 REMARK 500 SER A 36 -6.90 -59.80 REMARK 500 ALA A 234 52.63 -145.80 REMARK 500 ARG A 351 97.12 -56.06 REMARK 500 ARG A 352 -156.47 -91.87 REMARK 500 LEU A 362 33.17 -73.22 REMARK 500 GLN A 363 -14.87 -22.58 REMARK 500 ASP A 364 -96.41 158.42 REMARK 500 GLU A 383 -24.02 106.22 REMARK 500 GLU A 383 -34.59 106.22 REMARK 500 LEU A 384 127.51 -179.82 REMARK 500 PRO A 385 -161.45 -75.93 REMARK 500 PRO A 385 -161.45 -76.81 REMARK 500 GLU A 387 -29.75 -27.29 REMARK 500 TYR A 388 -76.15 -115.01 REMARK 500 ARG A 389 128.22 -11.77 REMARK 500 ARG A 390 -58.56 114.40 REMARK 500 LEU A 402 -73.48 -72.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 58 ARG A 59 -124.82 REMARK 500 LEU A 362 GLN A 363 145.08 REMARK 500 GLN A 363 ASP A 364 -33.06 REMARK 500 GLU A 383 LEU A 384 145.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 361 -27.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2027 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A2034 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A2042 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A2101 DISTANCE = 6.08 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GMC A1405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU A1406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A1407 REMARK 999 REMARK 999 SEQUENCE REMARK 999 ALL CYSTEINES REPLACED BY SERINE DBREF 1GPJ A 1 404 UNP Q9UXR8 HEM1_METKA 1 404 SEQADV 1GPJ SER A 6 UNP Q9UXR8 CYS 6 ENGINEERED MUTATION SEQADV 1GPJ SER A 42 UNP Q9UXR8 CYS 42 ENGINEERED MUTATION SEQADV 1GPJ SER A 48 UNP Q9UXR8 CYS 48 ENGINEERED MUTATION SEQADV 1GPJ SER A 90 UNP Q9UXR8 CYS 90 ENGINEERED MUTATION SEQADV 1GPJ SER A 393 UNP Q9UXR8 CYS 393 ENGINEERED MUTATION SEQRES 1 A 404 MET GLU ASP LEU VAL SER VAL GLY ILE THR HIS LYS GLU SEQRES 2 A 404 ALA GLU VAL GLU GLU LEU GLU LYS ALA ARG PHE GLU SER SEQRES 3 A 404 ASP GLU ALA VAL ARG ASP ILE VAL GLU SER PHE GLY LEU SEQRES 4 A 404 SER GLY SER VAL LEU LEU GLN THR SER ASN ARG VAL GLU SEQRES 5 A 404 VAL TYR ALA SER GLY ALA ARG ASP ARG ALA GLU GLU LEU SEQRES 6 A 404 GLY ASP LEU ILE HIS ASP ASP ALA TRP VAL LYS ARG GLY SEQRES 7 A 404 SER GLU ALA VAL ARG HIS LEU PHE ARG VAL ALA SER GLY SEQRES 8 A 404 LEU GLU SER MET MET VAL GLY GLU GLN GLU ILE LEU ARG SEQRES 9 A 404 GLN VAL LYS LYS ALA TYR ASP ARG ALA ALA ARG LEU GLY SEQRES 10 A 404 THR LEU ASP GLU ALA LEU LYS ILE VAL PHE ARG ARG ALA SEQRES 11 A 404 ILE ASN LEU GLY LYS ARG ALA ARG GLU GLU THR ARG ILE SEQRES 12 A 404 SER GLU GLY ALA VAL SER ILE GLY SER ALA ALA VAL GLU SEQRES 13 A 404 LEU ALA GLU ARG GLU LEU GLY SER LEU HIS ASP LYS THR SEQRES 14 A 404 VAL LEU VAL VAL GLY ALA GLY GLU MET GLY LYS THR VAL SEQRES 15 A 404 ALA LYS SER LEU VAL ASP ARG GLY VAL ARG ALA VAL LEU SEQRES 16 A 404 VAL ALA ASN ARG THR TYR GLU ARG ALA VAL GLU LEU ALA SEQRES 17 A 404 ARG ASP LEU GLY GLY GLU ALA VAL ARG PHE ASP GLU LEU SEQRES 18 A 404 VAL ASP HIS LEU ALA ARG SER ASP VAL VAL VAL SER ALA SEQRES 19 A 404 THR ALA ALA PRO HIS PRO VAL ILE HIS VAL ASP ASP VAL SEQRES 20 A 404 ARG GLU ALA LEU ARG LYS ARG ASP ARG ARG SER PRO ILE SEQRES 21 A 404 LEU ILE ILE ASP ILE ALA ASN PRO ARG ASP VAL GLU GLU SEQRES 22 A 404 GLY VAL GLU ASN ILE GLU ASP VAL GLU VAL ARG THR ILE SEQRES 23 A 404 ASP ASP LEU ARG VAL ILE ALA ARG GLU ASN LEU GLU ARG SEQRES 24 A 404 ARG ARG LYS GLU ILE PRO LYS VAL GLU LYS LEU ILE GLU SEQRES 25 A 404 GLU GLU LEU SER THR VAL GLU GLU GLU LEU GLU LYS LEU SEQRES 26 A 404 LYS GLU ARG ARG LEU VAL ALA ASP VAL ALA LYS SER LEU SEQRES 27 A 404 HIS GLU ILE LYS ASP ARG GLU LEU GLU ARG ALA LEU ARG SEQRES 28 A 404 ARG LEU LYS THR GLY ASP PRO GLU ASN VAL LEU GLN ASP SEQRES 29 A 404 PHE ALA GLU ALA TYR THR LYS ARG LEU ILE ASN VAL LEU SEQRES 30 A 404 THR SER ALA ILE MET GLU LEU PRO ASP GLU TYR ARG ARG SEQRES 31 A 404 ALA ALA SER ARG ALA LEU ARG ARG ALA SER GLU LEU ASN SEQRES 32 A 404 GLY HET GLU A1406 9 HET GMC A1405 21 HET CIT A1407 13 HETNAM GLU GLUTAMIC ACID HETNAM GMC (2R,3R,4S,5S)-4-AMINO-2-[6-(DIMETHYLAMINO)-9H-PURIN-9- HETNAM 2 GMC YL]-5-(HYDROXYMETHYL)TETRAHYDRO-3-FURANOL HETNAM CIT CITRIC ACID HETSYN GMC 6N-DIMETHYL-3'-DEOXY-AMINO-ADENOSINE FORMUL 2 GLU C5 H9 N O4 FORMUL 3 GMC C12 H18 N6 O3 FORMUL 4 CIT C6 H8 O7 FORMUL 5 HOH *353(H2 O) HELIX 1 1 GLU A 15 ARG A 23 1 9 HELIX 2 2 GLU A 28 PHE A 37 1 10 HELIX 3 3 ARG A 61 LEU A 68 1 8 HELIX 4 4 GLY A 78 SER A 90 1 13 HELIX 5 5 GLU A 99 GLY A 117 1 19 HELIX 6 6 ASP A 120 THR A 141 1 22 HELIX 7 7 SER A 149 GLY A 163 1 15 HELIX 8 8 GLY A 176 GLY A 190 1 15 HELIX 9 9 THR A 200 GLY A 212 1 13 HELIX 10 10 ARG A 217 ASP A 219 5 3 HELIX 11 11 GLU A 220 ARG A 227 1 8 HELIX 12 12 HIS A 243 ARG A 254 1 12 HELIX 13 13 GLY A 274 ILE A 278 5 5 HELIX 14 14 ILE A 286 LYS A 302 1 17 HELIX 15 15 GLU A 303 ARG A 351 1 49 HELIX 16 16 ASP A 364 GLU A 383 1 20 HELIX 17 17 ARG A 390 ASN A 403 1 14 SHEET 1 AA 4 GLY A 41 THR A 47 0 SHEET 2 AA 4 ARG A 50 SER A 56 -1 O ARG A 50 N THR A 47 SHEET 3 AA 4 LEU A 4 THR A 10 -1 O VAL A 5 N ALA A 55 SHEET 4 AA 4 TRP A 74 ARG A 77 -1 O TRP A 74 N GLY A 8 SHEET 1 AB 6 GLU A 214 ALA A 215 0 SHEET 2 AB 6 ALA A 193 ALA A 197 1 O VAL A 194 N GLU A 214 SHEET 3 AB 6 THR A 169 VAL A 173 1 O VAL A 170 N LEU A 195 SHEET 4 AB 6 VAL A 230 SER A 233 1 O VAL A 230 N LEU A 171 SHEET 5 AB 6 ILE A 260 ASP A 264 1 O LEU A 261 N VAL A 231 SHEET 6 AB 6 VAL A 281 THR A 285 1 O GLU A 282 N ILE A 262 LINK N3' GMC A1405 C GLU A1406 1555 1555 1.55 CISPEP 1 ASN A 267 PRO A 268 0 4.22 CISPEP 2 LYS A 354 THR A 355 0 -10.78 CISPEP 3 MET A 382 GLU A 383 0 15.24 SITE 1 AC1 6 ARG A 23 GLU A 25 SER A 48 GLU A 101 SITE 2 AC1 6 GLU A1406 HOH A2346 SITE 1 AC2 11 THR A 47 ASN A 49 ARG A 50 SER A 94 SITE 2 AC2 11 GLU A 99 GLU A 101 ILE A 102 GLN A 105 SITE 3 AC2 11 GMC A1405 HOH A2055 HOH A2347 SITE 1 AC3 12 GLU A 99 GLN A 100 ALA A 147 VAL A 148 SITE 2 AC3 12 SER A 149 SER A 152 ARG A 300 HOH A2349 SITE 3 AC3 12 HOH A2350 HOH A2352 HOH A2353 HOH A2354 CRYST1 78.267 98.650 68.606 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012777 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014576 0.00000