PDB Short entry for 1GXS HEADER LYASE 11-APR-02 1GXS TITLE CRYSTAL STRUCTURE OF HYDROXYNITRILE LYASE FROM SORGHUM BICOLOR IN TITLE 2 COMPLEX WITH INHIBITOR BENZOIC ACID: A NOVEL CYANOGENIC ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN A; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: HNL, HYDROXYNITRILE LYASE; COMPND 5 EC: 4.1.2.11; COMPND 6 OTHER_DETAILS: ISOENZYME II; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN B; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: HNL, HYDROXYNITRILE LYASE; COMPND 11 EC: 4.1.2.11; COMPND 12 OTHER_DETAILS: ISOENZYME II SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SORGHUM BICOLOR; SOURCE 3 ORGANISM_COMMON: SORGHUM; SOURCE 4 ORGANISM_TAXID: 4558; SOURCE 5 TISSUE: PRIMARY LEAVES OF SEEDLINGS; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SORGHUM BICOLOR; SOURCE 8 ORGANISM_COMMON: SORGHUM; SOURCE 9 ORGANISM_TAXID: 4558; SOURCE 10 TISSUE: PRIMARY LEAVES OF SEEDLINGS KEYWDS LYASE, INHIBITOR COMPLEX, CYANOGENESIS MECHANISM EXPDTA X-RAY DIFFRACTION AUTHOR H.LAUBLE,B.MIEHLICH,S.FOERSTER,H.WAJANT,F.EFFENBERGER REVDAT 5 13-DEC-23 1GXS 1 HETSYN REVDAT 4 29-JUL-20 1GXS 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 26-OCT-11 1GXS 1 COMPND KEYWDS REMARK DBREF REVDAT 3 2 1 HET HETNAM HETSYN FORMUL REVDAT 3 3 1 LINK SITE HETATM VERSN REVDAT 2 24-FEB-09 1GXS 1 VERSN REVDAT 1 01-OCT-02 1GXS 0 JRNL AUTH H.LAUBLE,B.MIEHLICH,S.FOERSTER,H.WAJANT,F.EFFENBERGER JRNL TITL CRYSTAL STRUCTURE OF HYDROXYNITRILE LYASE FROM SORGHUM JRNL TITL 2 BICOLOR IN COMPLEX WITH THE INHIBITOR BENZOIC ACID: A NOVEL JRNL TITL 3 CYANOGENIC ENZYME JRNL REF BIOCHEMISTRY V. 41 12043 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 12356304 JRNL DOI 10.1021/BI020300O REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.2 REMARK 3 NUMBER OF REFLECTIONS : 50480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5122 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5693 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 655 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6748 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 146 REMARK 3 SOLVENT ATOMS : 331 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 3.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.210 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.610 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.910 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.420 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.320 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19XHOH.PRO REMARK 3 PARAMETER FILE 2 : PARBEZ.PRO REMARK 3 PARAMETER FILE 3 : PARDKA.PRO REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19X.PRO REMARK 3 TOPOLOGY FILE 2 : TOPBEZ.PRO REMARK 3 TOPOLOGY FILE 3 : TOPDKA.PRO REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ASYMMETRIC UNIT CONTAINS 2 ALPHA/ BETA REMARK 3 -DIMERS REMARK 4 REMARK 4 1GXS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-02. REMARK 100 THE DEPOSITION ID IS D_1290009691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 291.0 REMARK 200 PH : 5.40 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR571 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100992 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 17.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 3SC2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM NA-CITRATE PH 5.4 USING 1.6 M REMARK 280 AMMONIUM SULFATE, PH 5.40 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.35000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.35000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 51.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICALLY ACTIVE SUBUNIT IS A REMARK 300 HETEROTETRAMER FORMED BY TWO AB-HETERODIMERS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 LEU A 2 REMARK 465 GLN A 3 REMARK 465 GLN C 1 REMARK 465 LEU C 2 REMARK 465 GLN C 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 229 NE2 HIS A 229 CD2 -0.078 REMARK 500 HIS B 308 NE2 HIS B 308 CD2 -0.071 REMARK 500 HIS B 419 NE2 HIS B 419 CD2 -0.067 REMARK 500 HIS C 146 NE2 HIS C 146 CD2 -0.068 REMARK 500 HIS D 419 NE2 HIS D 419 CD2 -0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 TRP A 42 CD1 - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 TRP A 59 CD1 - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 TRP A 59 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 81 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 LEU A 91 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 TRP A 96 CD1 - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TRP A 96 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TRP A 140 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP A 140 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 150 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 150 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP A 204 CD1 - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 TRP A 204 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 TRP A 205 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP A 205 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 215 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 TRP A 238 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP A 238 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 268 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 TRP A 270 CD1 - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP A 270 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 VAL B 291 CB - CA - C ANGL. DEV. = -13.8 DEGREES REMARK 500 TRP B 319 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP B 319 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 CYS B 322 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 TRP B 330 CD1 - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG B 342 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 350 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG B 350 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP B 352 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP B 352 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG B 368 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 368 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP B 385 CD1 - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP B 385 CB - CG - CD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 TRP B 385 CE2 - CD2 - CG ANGL. DEV. = -6.4 DEGREES REMARK 500 TRP B 385 CG - CD2 - CE3 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP B 397 CD1 - CG - CD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 TRP B 397 CB - CG - CD1 ANGL. DEV. = -8.8 DEGREES REMARK 500 TRP B 397 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 TRP B 397 CG - CD2 - CE3 ANGL. DEV. = 5.8 DEGREES REMARK 500 VAL B 399 CB - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 ARG B 420 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 420 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG C 37 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 TRP C 42 CD1 - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 TRP C 42 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 THR C 48 N - CA - CB ANGL. DEV. = -11.6 DEGREES REMARK 500 TRP C 59 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 94 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 47 75.37 -103.01 REMARK 500 LEU A 71 -77.35 -92.26 REMARK 500 GLU A 76 -76.26 -103.80 REMARK 500 HIS A 146 2.79 -66.66 REMARK 500 TYR A 149 -2.47 64.95 REMARK 500 ASN A 247 42.87 -89.20 REMARK 500 THR A 252 88.50 -164.48 REMARK 500 PRO C 55 173.48 -58.48 REMARK 500 LEU C 71 -77.68 -85.46 REMARK 500 GLU C 76 -72.36 -113.13 REMARK 500 HIS C 146 -7.36 -58.25 REMARK 500 GLU C 157 49.72 -95.24 REMARK 500 SER C 176 64.58 -116.17 REMARK 500 SER C 188 57.21 31.83 REMARK 500 ASN C 247 36.07 -94.71 REMARK 500 THR C 252 86.95 -171.45 REMARK 500 ARG C 260 80.44 -66.47 REMARK 500 PRO C 262 70.52 -63.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 40 0.07 SIDE CHAIN REMARK 500 TYR A 41 0.08 SIDE CHAIN REMARK 500 TYR C 40 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 999 REMARK 999 SEQUENCE REMARK 999 VARIANTS LISTED IN SEQADV RECORDS WERE SUPPLIED BY THE REMARK 999 AUTHORS OF THE PDB ENTRY, AND WERE NOT OBTAINED FROM THE REMARK 999 SWISS-PROT ENTRY DBREF 1GXS A 1 270 UNP Q8W4X3 HNLS_SORBI 56 325 DBREF 1GXS B 283 440 UNP Q8W4X3 HNLS_SORBI 338 495 DBREF 1GXS C 1 270 UNP Q8W4X3 HNLS_SORBI 56 325 DBREF 1GXS D 283 440 UNP Q8W4X3 HNLS_SORBI 338 495 SEQADV 1GXS LEU A 11 UNP Q8W4X3 PRO 66 VARIANT SEQADV 1GXS ALA A 79 UNP Q8W4X3 PRO 134 VARIANT SEQADV 1GXS GLY A 112 UNP Q8W4X3 VAL 167 VARIANT SEQADV 1GXS SER A 203 UNP Q8W4X3 LEU 258 VARIANT SEQADV 1GXS LEU C 11 UNP Q8W4X3 PRO 66 VARIANT SEQADV 1GXS ALA C 79 UNP Q8W4X3 PRO 134 VARIANT SEQADV 1GXS GLY C 112 UNP Q8W4X3 VAL 167 VARIANT SEQADV 1GXS SER C 203 UNP Q8W4X3 LEU 258 VARIANT SEQADV 1GXS THR B 408 UNP Q8W4X3 SER 463 VARIANT SEQADV 1GXS VAL B 409 UNP Q8W4X3 PRO 464 VARIANT SEQADV 1GXS ARG B 410 UNP Q8W4X3 SER 465 VARIANT SEQADV 1GXS THR D 408 UNP Q8W4X3 SER 463 VARIANT SEQADV 1GXS VAL D 409 UNP Q8W4X3 PRO 464 VARIANT SEQADV 1GXS ARG D 410 UNP Q8W4X3 SER 465 VARIANT SEQRES 1 A 270 GLN LEU GLN GLN GLN GLU ASP ASP ARG ILE LEU GLY LEU SEQRES 2 A 270 PRO GLY GLN PRO ASN GLY VAL ALA PHE GLY MET TYR GLY SEQRES 3 A 270 GLY TYR VAL THR ILE ASP ASP ASN ASN GLY ARG ALA LEU SEQRES 4 A 270 TYR TYR TRP PHE GLN GLU ALA ASP THR ALA ASP PRO ALA SEQRES 5 A 270 ALA ALA PRO LEU VAL LEU TRP LEU ASN GLY GLY PRO GLY SEQRES 6 A 270 CYS SER SER ILE GLY LEU GLY ALA MET GLN GLU LEU GLY SEQRES 7 A 270 ALA PHE ARG VAL HIS THR ASN GLY GLU SER LEU LEU LEU SEQRES 8 A 270 ASN GLU TYR ALA TRP ASN LYS ALA ALA ASN ILE LEU PHE SEQRES 9 A 270 ALA GLU SER PRO ALA GLY VAL GLY PHE SER TYR SER ASN SEQRES 10 A 270 THR SER SER ASP LEU SER MET GLY ASP ASP LYS MET ALA SEQRES 11 A 270 GLN ASP THR TYR THR PHE LEU VAL LYS TRP PHE GLU ARG SEQRES 12 A 270 PHE PRO HIS TYR ASN TYR ARG GLU PHE TYR ILE ALA GLY SEQRES 13 A 270 GLU SER GLY HIS PHE ILE PRO GLN LEU SER GLN VAL VAL SEQRES 14 A 270 TYR ARG ASN ARG ASN ASN SER PRO PHE ILE ASN PHE GLN SEQRES 15 A 270 GLY LEU LEU VAL SER SER GLY LEU THR ASN ASP HIS GLU SEQRES 16 A 270 ASP MET ILE GLY MET PHE GLU SER TRP TRP HIS HIS GLY SEQRES 17 A 270 LEU ILE SER ASP GLU THR ARG ASP SER GLY LEU LYS VAL SEQRES 18 A 270 CYS PRO GLY THR SER PHE MET HIS PRO THR PRO GLU CYS SEQRES 19 A 270 THR GLU VAL TRP ASN LYS ALA LEU ALA GLU GLN GLY ASN SEQRES 20 A 270 ILE ASN PRO TYR THR ILE TYR THR PRO THR CYS ASP ARG SEQRES 21 A 270 GLU PRO SER PRO TYR GLN ARG ARG PHE TRP SEQRES 1 B 158 LEU PRO PRO TYR ASP PRO CYS ALA VAL PHE ASN SER ILE SEQRES 2 B 158 ASN TYR LEU ASN LEU PRO GLU VAL GLN THR ALA LEU HIS SEQRES 3 B 158 ALA ASN VAL SER GLY ILE VAL GLU TYR PRO TRP THR VAL SEQRES 4 B 158 CYS SER ASN THR ILE PHE ASP GLN TRP GLY GLN ALA ALA SEQRES 5 B 158 ASP ASP LEU LEU PRO VAL TYR ARG GLU LEU ILE GLN ALA SEQRES 6 B 158 GLY LEU ARG VAL TRP VAL TYR SER GLY ASP THR ASP SER SEQRES 7 B 158 VAL VAL PRO VAL SER SER THR ARG ARG SER LEU ALA ALA SEQRES 8 B 158 LEU GLU LEU PRO VAL LYS THR SER TRP TYR PRO TRP TYR SEQRES 9 B 158 MET ALA PRO THR GLU ARG GLU VAL GLY GLY TRP SER VAL SEQRES 10 B 158 GLN TYR GLU GLY LEU THR TYR VAL THR VAL ARG GLY ALA SEQRES 11 B 158 GLY HIS LEU VAL PRO VAL HIS ARG PRO ALA GLN ALA PHE SEQRES 12 B 158 LEU LEU PHE LYS GLN PHE LEU LYS GLY GLU PRO MET PRO SEQRES 13 B 158 ALA GLU SEQRES 1 C 270 GLN LEU GLN GLN GLN GLU ASP ASP ARG ILE LEU GLY LEU SEQRES 2 C 270 PRO GLY GLN PRO ASN GLY VAL ALA PHE GLY MET TYR GLY SEQRES 3 C 270 GLY TYR VAL THR ILE ASP ASP ASN ASN GLY ARG ALA LEU SEQRES 4 C 270 TYR TYR TRP PHE GLN GLU ALA ASP THR ALA ASP PRO ALA SEQRES 5 C 270 ALA ALA PRO LEU VAL LEU TRP LEU ASN GLY GLY PRO GLY SEQRES 6 C 270 CYS SER SER ILE GLY LEU GLY ALA MET GLN GLU LEU GLY SEQRES 7 C 270 ALA PHE ARG VAL HIS THR ASN GLY GLU SER LEU LEU LEU SEQRES 8 C 270 ASN GLU TYR ALA TRP ASN LYS ALA ALA ASN ILE LEU PHE SEQRES 9 C 270 ALA GLU SER PRO ALA GLY VAL GLY PHE SER TYR SER ASN SEQRES 10 C 270 THR SER SER ASP LEU SER MET GLY ASP ASP LYS MET ALA SEQRES 11 C 270 GLN ASP THR TYR THR PHE LEU VAL LYS TRP PHE GLU ARG SEQRES 12 C 270 PHE PRO HIS TYR ASN TYR ARG GLU PHE TYR ILE ALA GLY SEQRES 13 C 270 GLU SER GLY HIS PHE ILE PRO GLN LEU SER GLN VAL VAL SEQRES 14 C 270 TYR ARG ASN ARG ASN ASN SER PRO PHE ILE ASN PHE GLN SEQRES 15 C 270 GLY LEU LEU VAL SER SER GLY LEU THR ASN ASP HIS GLU SEQRES 16 C 270 ASP MET ILE GLY MET PHE GLU SER TRP TRP HIS HIS GLY SEQRES 17 C 270 LEU ILE SER ASP GLU THR ARG ASP SER GLY LEU LYS VAL SEQRES 18 C 270 CYS PRO GLY THR SER PHE MET HIS PRO THR PRO GLU CYS SEQRES 19 C 270 THR GLU VAL TRP ASN LYS ALA LEU ALA GLU GLN GLY ASN SEQRES 20 C 270 ILE ASN PRO TYR THR ILE TYR THR PRO THR CYS ASP ARG SEQRES 21 C 270 GLU PRO SER PRO TYR GLN ARG ARG PHE TRP SEQRES 1 D 158 LEU PRO PRO TYR ASP PRO CYS ALA VAL PHE ASN SER ILE SEQRES 2 D 158 ASN TYR LEU ASN LEU PRO GLU VAL GLN THR ALA LEU HIS SEQRES 3 D 158 ALA ASN VAL SER GLY ILE VAL GLU TYR PRO TRP THR VAL SEQRES 4 D 158 CYS SER ASN THR ILE PHE ASP GLN TRP GLY GLN ALA ALA SEQRES 5 D 158 ASP ASP LEU LEU PRO VAL TYR ARG GLU LEU ILE GLN ALA SEQRES 6 D 158 GLY LEU ARG VAL TRP VAL TYR SER GLY ASP THR ASP SER SEQRES 7 D 158 VAL VAL PRO VAL SER SER THR ARG ARG SER LEU ALA ALA SEQRES 8 D 158 LEU GLU LEU PRO VAL LYS THR SER TRP TYR PRO TRP TYR SEQRES 9 D 158 MET ALA PRO THR GLU ARG GLU VAL GLY GLY TRP SER VAL SEQRES 10 D 158 GLN TYR GLU GLY LEU THR TYR VAL THR VAL ARG GLY ALA SEQRES 11 D 158 GLY HIS LEU VAL PRO VAL HIS ARG PRO ALA GLN ALA PHE SEQRES 12 D 158 LEU LEU PHE LYS GLN PHE LEU LYS GLY GLU PRO MET PRO SEQRES 13 D 158 ALA GLU MODRES 1GXS ASN A 117 ASN GLYCOSYLATION SITE MODRES 1GXS ASN B 310 ASN GLYCOSYLATION SITE MODRES 1GXS ASN C 117 ASN GLYCOSYLATION SITE MODRES 1GXS ASN D 310 ASN GLYCOSYLATION SITE HET NAG E 1 14 HET FUL E 2 10 HET NAG E 3 14 HET NAG F 1 14 HET FUL F 2 10 HET NAG F 3 14 HET BEZ A 601 9 HET DKA A 701 12 HET NAG B1310 14 HET BEZ C 602 9 HET DKA C 702 12 HET NAG D1310 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM BEZ BENZOIC ACID HETNAM DKA DECANOIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE FORMUL 5 NAG 6(C8 H15 N O6) FORMUL 5 FUL 2(C6 H12 O5) FORMUL 7 BEZ 2(C7 H6 O2) FORMUL 8 DKA 2(C10 H20 O2) FORMUL 13 HOH *331(H2 O) HELIX 1 1 GLN A 4 ARG A 9 1 6 HELIX 2 2 ASP A 50 ALA A 54 5 5 HELIX 3 3 SER A 68 GLY A 78 5 11 HELIX 4 4 ALA A 95 ALA A 99 5 5 HELIX 5 5 THR A 118 SER A 123 5 6 HELIX 6 6 GLY A 125 PHE A 144 1 20 HELIX 7 7 PRO A 145 ASN A 148 5 4 HELIX 8 8 HIS A 160 ASN A 172 1 13 HELIX 9 9 ASN A 192 HIS A 207 1 16 HELIX 10 10 SER A 211 CYS A 222 1 12 HELIX 11 11 THR A 231 GLN A 245 1 15 HELIX 12 12 ALA B 290 ASN B 299 1 10 HELIX 13 13 LEU B 300 HIS B 308 1 9 HELIX 14 14 ASN B 310 ILE B 314 5 5 HELIX 15 15 SER B 323 GLN B 329 1 7 HELIX 16 16 LEU B 337 ALA B 347 1 11 HELIX 17 17 PRO B 363 ALA B 373 1 11 HELIX 18 18 LEU B 415 ARG B 420 1 6 HELIX 19 19 ARG B 420 GLY B 434 1 15 HELIX 20 20 GLN C 4 ASP C 8 5 5 HELIX 21 21 ASP C 50 ALA C 54 5 5 HELIX 22 22 SER C 68 LEU C 77 3 10 HELIX 23 23 ALA C 95 ALA C 99 5 5 HELIX 24 24 THR C 118 SER C 123 5 6 HELIX 25 25 GLY C 125 PHE C 144 1 20 HELIX 26 26 PRO C 145 ASN C 148 5 4 HELIX 27 27 HIS C 160 ASN C 172 1 13 HELIX 28 28 ASN C 192 HIS C 207 1 16 HELIX 29 29 SER C 211 CYS C 222 1 12 HELIX 30 30 THR C 231 GLN C 245 1 15 HELIX 31 31 ALA D 290 ASN D 299 1 10 HELIX 32 32 LEU D 300 HIS D 308 1 9 HELIX 33 33 ASN D 310 ILE D 314 5 5 HELIX 34 34 SER D 323 GLN D 329 1 7 HELIX 35 35 LEU D 337 ALA D 347 1 11 HELIX 36 36 PRO D 363 ALA D 373 1 11 HELIX 37 37 LEU D 415 ARG D 420 1 6 HELIX 38 38 ARG D 420 GLY D 434 1 15 SHEET 1 AA 3 MET A 24 ASP A 32 0 SHEET 2 AA 3 ARG A 37 GLN A 44 -1 O ARG A 37 N ILE A 31 SHEET 3 AA 3 TYR A 115 SER A 116 -1 O TYR A 115 N ALA A 38 SHEET 1 AB10 MET A 24 ASP A 32 0 SHEET 2 AB10 ARG A 37 GLN A 44 -1 O ARG A 37 N ILE A 31 SHEET 3 AB10 ASN A 101 ALA A 105 -1 O ILE A 102 N GLN A 44 SHEET 4 AB10 LEU A 56 ASN A 61 1 O VAL A 57 N LEU A 103 SHEET 5 AB10 GLU A 151 GLU A 157 1 O GLU A 151 N LEU A 56 SHEET 6 AB10 ASN A 180 SER A 187 1 O ASN A 180 N PHE A 152 SHEET 7 AB10 ARG B 350 GLY B 356 1 O ARG B 350 N LEU A 184 SHEET 8 AB10 LEU B 404 VAL B 409 1 O THR B 405 N VAL B 353 SHEET 9 AB10 VAL B 394 TYR B 401 -1 O TRP B 397 N THR B 408 SHEET 10 AB10 VAL B 378 TYR B 386 -1 N LYS B 379 O GLN B 400 SHEET 1 AC 2 PHE A 80 VAL A 82 0 SHEET 2 AC 2 LEU A 89 LEU A 91 -1 O LEU A 90 N ARG A 81 SHEET 1 CA 3 MET C 24 ASP C 32 0 SHEET 2 CA 3 ARG C 37 GLN C 44 -1 O ARG C 37 N ILE C 31 SHEET 3 CA 3 TYR C 115 SER C 116 -1 O TYR C 115 N ALA C 38 SHEET 1 CB10 MET C 24 ASP C 32 0 SHEET 2 CB10 ARG C 37 GLN C 44 -1 O ARG C 37 N ILE C 31 SHEET 3 CB10 ASN C 101 ALA C 105 -1 O ILE C 102 N GLN C 44 SHEET 4 CB10 LEU C 56 LEU C 60 1 O VAL C 57 N LEU C 103 SHEET 5 CB10 GLU C 151 GLY C 156 1 O GLU C 151 N LEU C 56 SHEET 6 CB10 ASN C 180 SER C 187 1 O ASN C 180 N PHE C 152 SHEET 7 CB10 ARG D 350 GLY D 356 1 O ARG D 350 N LEU C 184 SHEET 8 CB10 THR D 405 VAL D 409 1 O THR D 405 N VAL D 353 SHEET 9 CB10 GLY D 396 TYR D 401 -1 O TRP D 397 N THR D 408 SHEET 10 CB10 VAL D 378 TRP D 385 -1 N LYS D 379 O GLN D 400 SHEET 1 CC 2 PHE C 80 VAL C 82 0 SHEET 2 CC 2 LEU C 89 LEU C 91 -1 O LEU C 90 N ARG C 81 SSBOND 1 CYS A 66 CYS B 322 1555 1555 2.00 SSBOND 2 CYS A 222 CYS A 234 1555 1555 2.04 SSBOND 3 CYS A 258 CYS B 289 1555 1555 2.00 SSBOND 4 CYS C 66 CYS D 322 1555 1555 2.02 SSBOND 5 CYS C 222 CYS C 234 1555 1555 2.02 SSBOND 6 CYS C 258 CYS D 289 1555 1555 1.99 LINK ND2 ASN A 117 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN B 310 C1 NAG B1310 1555 1555 1.45 LINK ND2 ASN C 117 C1 NAG F 1 1555 1555 1.45 LINK ND2 ASN D 310 C1 NAG D1310 1555 1555 1.45 LINK O3 NAG E 1 C1 FUL E 2 1555 1555 1.39 LINK O4 NAG E 1 C1 NAG E 3 1555 1555 1.39 LINK O3 NAG F 1 C1 FUL F 2 1555 1555 1.39 LINK O4 NAG F 1 C1 NAG F 3 1555 1555 1.39 CISPEP 1 GLY A 63 PRO A 64 0 -16.06 CISPEP 2 SER A 107 PRO A 108 0 -1.81 CISPEP 3 GLY C 63 PRO C 64 0 -6.70 CISPEP 4 SER C 107 PRO C 108 0 1.71 CRYST1 150.700 103.700 90.600 90.00 101.30 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006636 0.000000 0.001326 0.00000 SCALE2 0.000000 0.009643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011256 0.00000