PDB Short entry for 1GXW HEADER HYDROLASE 12-APR-02 1GXW TITLE THE 2.2 A RESOLUTION STRUCTURE OF THERMOLYSIN CRYSTALLIZED IN PRESENCE TITLE 2 OF POTASSIUM THIOCYANATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS HYDROLASE, THERMOLYSIN, METALLOENDOPEPTIDASE, THIOCYANATE, SALTING- KEYWDS 2 IN, METALLOPROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR J.F.GAUCHER,M.SELKTI,T.PRANGE,A.TOMAS REVDAT 5 08-MAY-19 1GXW 1 REMARK REVDAT 4 20-JUN-18 1GXW 1 REMARK LINK REVDAT 3 30-JAN-13 1GXW 1 JRNL REMARK VERSN FORMUL REVDAT 3 2 1 SITE REVDAT 2 24-FEB-09 1GXW 1 VERSN REVDAT 1 05-DEC-02 1GXW 0 JRNL AUTH J.GAUCHER,M.SELKTI,T.PRANGE,A.TOMAS JRNL TITL THE 2.2 A RESOLUTION STRUCTURE OF THERMOLYSIN (TLN) JRNL TITL 2 CRYSTALLIZED IN THE PRESENCE OF POTASSIUM THIOCYANATE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 58 2198 2002 JRNL REFN ISSN 0907-4449 JRNL PMID 12454500 JRNL DOI 10.1107/S0907444902015457 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.INOUYE,K.KUZUYA,B.TONOMURA REMARK 1 TITL EFFECT OF SALTS ON THE SOLUBILITY OF THERMOLYSIN: A REMARK 1 TITL 2 REMARKABLE INCREASE IN THE SOLUBILITY AS WELL AS THE REMARK 1 TITL 3 ACTIVITY BY THE ADDITION OF SALTS WITHOUT AGGREGATION OR REMARK 1 TITL 4 DISPERSION OF THERMOLYSIN REMARK 1 REF J.BIOCHEM. V. 123 847 1998 REMARK 1 REFN ISSN 0021-924X REMARK 1 PMID 9562615 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.A.HOLMES,B.W.MATTHEWS REMARK 1 TITL STRUCTURE OF THERMOLYSIN REFINED AT 1.6A RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 160 623 1982 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 7175940 REMARK 1 DOI 10.1016/0022-2836(82)90319-9 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2790416.670 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 16715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1703 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2198 REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 261 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.72000 REMARK 3 B22 (A**2) : -0.72000 REMARK 3 B33 (A**2) : 1.44000 REMARK 3 B12 (A**2) : -3.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.22 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.730 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.500 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.050 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.570 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.520 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.59 REMARK 3 BSOL : 105.0 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : SCN.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 1GXW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-APR-02. REMARK 100 THE DEPOSITION ID IS D_1290009675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-99 REMARK 200 TEMPERATURE (KELVIN) : 283.0 REMARK 200 PH : 8.30 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LURE REMARK 200 BEAMLINE : DW21B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.375 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15898 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 19.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 8TLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5MICROL HANGING DROP CONTAINING REMARK 280 87MG/ML OF THERMOLYSIN IN BUFFER A (50MM TRIS/HCL PH8.3, 1M KSCN, REMARK 280 20MM CACL2) WAS EQUILIBRATED AGAINST 740MICROL BUFFER A AND REMARK 280 260MICROL WATER (SALTING-IN METHOD), PH 8.30, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.54333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.08667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.31500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.85833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.77167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.54333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.08667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.85833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.31500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.77167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOMOLECULE CONSISTS OF A DI-PEPTIDE REMARK 300 BURIED WITHINTHE PROTEIN. THE BOUND SURFACE AREA REMARK 300 BETWEEN THE TWOCHAINS IS 947.8 ANGSTROM**2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C VAL A 322 N LYS A 323 1.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 316 C LYS A 316 OXT 0.442 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 25 82.93 -167.03 REMARK 500 THR A 26 -57.45 78.55 REMARK 500 PHE A 62 67.45 -111.95 REMARK 500 SER A 92 -178.32 64.05 REMARK 500 SER A 107 -158.02 56.23 REMARK 500 ASN A 111 43.93 -93.32 REMARK 500 PRO A 132 114.34 -38.79 REMARK 500 THR A 152 -101.64 -112.50 REMARK 500 ASN A 159 -145.59 56.28 REMARK 500 THR A 194 78.72 28.29 REMARK 500 ILE A 232 -60.10 -93.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 VAL A 322 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1319 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD1 REMARK 620 2 ASP A 57 OD2 48.8 REMARK 620 3 ASP A 59 OD1 121.7 73.1 REMARK 620 4 GLN A 61 O 98.7 91.2 84.7 REMARK 620 5 HOH A2014 O 95.4 98.4 88.2 165.9 REMARK 620 6 HOH A2052 O 83.3 130.2 153.6 82.7 98.7 REMARK 620 7 HOH A2041 O 160.3 150.0 77.1 88.4 78.1 79.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1317 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD2 REMARK 620 2 GLU A 177 OE1 76.6 REMARK 620 3 GLU A 177 OE2 123.7 47.4 REMARK 620 4 ASP A 185 OD1 158.0 125.3 78.0 REMARK 620 5 GLU A 187 O 83.3 144.5 145.4 78.3 REMARK 620 6 GLU A 190 OE1 80.3 127.3 125.2 83.7 76.4 REMARK 620 7 GLU A 190 OE2 91.5 86.8 81.0 88.5 123.2 47.1 REMARK 620 8 HOH A2100 O 104.0 82.7 78.1 82.6 74.0 149.4 158.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1321 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 103.3 REMARK 620 3 GLU A 166 OE1 98.2 110.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1318 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 177 OE2 REMARK 620 2 ASN A 183 O 89.8 REMARK 620 3 ASP A 185 OD2 93.0 89.3 REMARK 620 4 GLU A 190 OE2 91.4 172.7 83.4 REMARK 620 5 HOH A2108 O 171.9 87.9 94.7 92.0 REMARK 620 6 HOH A2109 O 87.5 90.8 179.5 96.4 84.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1320 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 193 O REMARK 620 2 THR A 194 O 72.7 REMARK 620 3 THR A 194 OG1 77.5 65.5 REMARK 620 4 ILE A 197 O 146.6 82.1 111.8 REMARK 620 5 ASP A 200 OD1 132.1 133.2 80.9 81.2 REMARK 620 6 HOH A2107 O 86.3 150.9 130.2 107.4 75.9 REMARK 620 7 HOH A2112 O 89.4 80.8 146.1 64.7 128.6 79.0 REMARK 620 N 1 2 3 4 5 6 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 1322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Di-peptide VAL A 322 and LYS A REMARK 800 323 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FJ3 RELATED DB: PDB REMARK 900 THERMOLYSIN (50% ACETONE SOAKED) REMARK 900 RELATED ID: 1FJO RELATED DB: PDB REMARK 900 THERMOLYSIN (60% ACETONE SOAKED CRYSTALS) REMARK 900 RELATED ID: 1FJQ RELATED DB: PDB REMARK 900 THERMOLYSIN (70% ACETONE SOAKED CRYSTALS) REMARK 900 RELATED ID: 1FJT RELATED DB: PDB REMARK 900 THERMOLYSIN (50% ACETONITRILE SOAKED CRYSTALS) REMARK 900 RELATED ID: 1FJU RELATED DB: PDB REMARK 900 THERMOLYSIN (80% ACETONITRILE SOAKED CRYSTALS) REMARK 900 RELATED ID: 1FJV RELATED DB: PDB REMARK 900 THERMOLYSIN (60% ACETONITRILE SOAKED CRYSTALS) REMARK 900 RELATED ID: 1FJW RELATED DB: PDB REMARK 900 THERMOLYSIN (50 MM PHENOL SOAKED) REMARK 900 RELATED ID: 1HYT RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH BENZYLSUCCINIC ACID (2(S)-BENZYL-3- REMARK 900 CARBOXYPROPIONIC ACID) REMARK 900 RELATED ID: 1LNA RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH COBALT REMARK 900 RELATED ID: 1LNB RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH IRON REMARK 900 RELATED ID: 1LNC RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH MANGANESE REMARK 900 RELATED ID: 1LND RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH ZINC REMARK 900 RELATED ID: 1LNE RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH CADMIUM REMARK 900 RELATED ID: 1LNF RELATED DB: PDB REMARK 900 THERMOLYSIN REMARK 900 RELATED ID: 1QF0 RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH (2-SULPHANYL-3- PHENYLPROPANOYL)-PHE- REMARK 900 TYR. PARAMETERS FOR ZN- BIDENTATION OF MERCAPTOACYLDIPEPTIDES IN REMARK 900 METALLOENDOPEPTIDASE REMARK 900 RELATED ID: 1QF1 RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH (2- SULPHANYLHEPTANOYL)-PHE-ALA. REMARK 900 PARAMETERS FOR ZN -BIDENTATION OF MERCAPTOACYLDIPEPTIDES IN REMARK 900 METALLOENDOPEPTIDASE REMARK 900 RELATED ID: 1QF2 RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH (2-SULPHANYL-3- PHENYLPROPANOYL)-GLY-(5- REMARK 900 PHENYLPROLINE). PARAMETERS FOR ZN- MONODENTATION OF REMARK 900 MERCAPTOACYLDIPEPTIDES IN METALLOENDOPEPTIDASE REMARK 900 RELATED ID: 1THL RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH A NOVEL GLUTARAMIDE DERIVATIVE, N-(1- REMARK 900 (2(R,S)-CARBOXY-4- PHENYLBUTYL) CYCLOPENTYLCARBONYL)-(S)-TRYPTOPHAN REMARK 900 RELATED ID: 1TLI RELATED DB: PDB REMARK 900 THERMOLYSIN (2% ISOPROPANOL SOAKED CRYSTALS) REMARK 900 RELATED ID: 1TLP RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH PHOSPHORAMIDON REMARK 900 RELATED ID: 1TLX RELATED DB: PDB REMARK 900 THERMOLYSIN (NATIVE) REMARK 900 RELATED ID: 1TMN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH N-(1-CARBOXY-3- PHENYLPROPYL)-L-LEUCYL-L- REMARK 900 TRYPTOPHAN REMARK 900 RELATED ID: 1TRL RELATED DB: PDB REMARK 900 THERMOLYSIN FRAGMENT 255 - 316 (NMR, 8 STRUCTURES) REMARK 900 RELATED ID: 2TLI RELATED DB: PDB REMARK 900 THERMOLYSIN (5% ISOPROPANOL SOAKED CRYSTALS) REMARK 900 RELATED ID: 2TLX RELATED DB: PDB REMARK 900 THERMOLYSIN (NATIVE) REMARK 900 RELATED ID: 2TMN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH N-PHOSPHORYL-L- LEUCINAMIDE (P-LEU-NH2) REMARK 900 RELATED ID: 3TLI RELATED DB: PDB REMARK 900 THERMOLYSIN (10% ISOPROPANOL SOAKED CRYSTALS) REMARK 900 RELATED ID: 3TMN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH VAL-TRP (VW) REMARK 900 RELATED ID: 4TLI RELATED DB: PDB REMARK 900 THERMOLYSIN (25% ISOPROPANOL SOAKED CRYSTALS) REMARK 900 RELATED ID: 4TLN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH L-LEUCYL- HYDROXYLAMINE REMARK 900 RELATED ID: 4TMN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH CBZ-PHE==P==-LEU- ALA (ZFPLA) REMARK 900 RELATED ID: 5TLI RELATED DB: PDB REMARK 900 THERMOLYSIN (60% ISOPROPANOL SOAKED CRYSTALS) REMARK 900 RELATED ID: 5TLN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH HONH-BENZYLMALONYL-L -ALANYLGLYCINE-P- REMARK 900 NITROANILIDE REMARK 900 RELATED ID: 5TMN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH CBZ-GLY==P==-LEU- LEU (ZG==P==LL) REMARK 900 RELATED ID: 6TLI RELATED DB: PDB REMARK 900 THERMOLYSIN (60% ISOPROPANOL SOAKED CRYSTALS) REMARK 900 RELATED ID: 6TMN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH CBZ-GLY==P==-(O)- LEU-LEU (ZG==P==(O)LL) REMARK 900 RELATED ID: 7TLI RELATED DB: PDB REMARK 900 THERMOLYSIN (90% ISOPROPANOL SOAKED CRYSTALS) REMARK 900 RELATED ID: 7TLN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH CH2CO(N-OH)LEU- OCH3 REMARK 900 RELATED ID: 8TLI RELATED DB: PDB REMARK 900 THERMOLYSIN (100% ISOPROPANOL SOAKED CRYSTALS) REMARK 900 RELATED ID: 8TLN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH VAL-LYS DIPEPTIDE DBREF 1GXW A 1 316 UNP P00800 THER_BACTH 1 316 SEQRES 1 A 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 A 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 A 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASP GLY ILE SEQRES 4 A 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 A 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 A 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 A 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 A 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 A 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 A 316 SER GLU MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 A 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 A 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 A 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 A 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 A 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 A 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 A 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 A 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 A 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 A 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 A 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 A 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 A 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 A 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 A 316 VAL GLY VAL LYS HET VAL A 322 7 HET LYS A 323 10 HET CA A1317 1 HET CA A1318 1 HET CA A1319 1 HET CA A1320 1 HET ZN A1321 1 HET SCN A1322 3 HETNAM VAL VALINE HETNAM LYS LYSINE HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM SCN THIOCYANATE ION FORMUL 2 VAL C5 H11 N O2 FORMUL 3 LYS C6 H15 N2 O2 1+ FORMUL 4 CA 4(CA 2+) FORMUL 8 ZN ZN 2+ FORMUL 9 SCN C N S 1- FORMUL 10 HOH *170(H2 O) HELIX 1 1 ASP A 67 ASN A 89 1 23 HELIX 2 2 PRO A 132 GLY A 135 5 4 HELIX 3 3 GLY A 136 THR A 152 1 17 HELIX 4 4 GLN A 158 ALA A 180 1 23 HELIX 5 5 ASP A 207 GLY A 212 5 6 HELIX 6 6 HIS A 216 ARG A 220 5 5 HELIX 7 7 THR A 224 VAL A 230 1 7 HELIX 8 8 ASN A 233 GLN A 246 1 14 HELIX 9 9 GLY A 259 TYR A 274 1 16 HELIX 10 10 ASN A 280 GLY A 297 1 18 HELIX 11 11 SER A 300 VAL A 313 1 14 SHEET 1 AA 5 ALA A 56 ASP A 57 0 SHEET 2 AA 5 TYR A 28 TYR A 29 -1 O TYR A 28 N ASP A 57 SHEET 3 AA 5 GLN A 17 TYR A 24 -1 O THR A 23 N TYR A 29 SHEET 4 AA 5 THR A 4 ARG A 11 -1 O THR A 4 N TYR A 24 SHEET 5 AA 5 GLN A 61 PHE A 62 1 O PHE A 62 N ARG A 11 SHEET 1 AB 5 GLN A 31 ASP A 32 0 SHEET 2 AB 5 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 AB 5 ILE A 100 TYR A 106 1 O ILE A 100 N PHE A 40 SHEET 4 AB 5 MET A 120 GLY A 123 1 O MET A 120 N SER A 103 SHEET 5 AB 5 ALA A 113 TRP A 115 -1 O PHE A 114 N VAL A 121 SHEET 1 AC 3 GLN A 31 ASP A 32 0 SHEET 2 AC 3 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 AC 3 SER A 53 LEU A 54 -1 O SER A 53 N ASP A 43 SHEET 1 AD 2 GLU A 187 ILE A 188 0 SHEET 2 AD 2 ARG A 203 SER A 204 -1 O ARG A 203 N ILE A 188 SHEET 1 AE 2 GLY A 247 HIS A 250 0 SHEET 2 AE 2 VAL A 253 VAL A 256 -1 O VAL A 253 N HIS A 250 LINK OD1 ASP A 57 CA CA A1319 1555 1555 2.65 LINK OD2 ASP A 57 CA CA A1319 1555 1555 2.70 LINK OD1 ASP A 59 CA CA A1319 1555 1555 2.57 LINK O GLN A 61 CA CA A1319 1555 1555 2.41 LINK OD2 ASP A 138 CA CA A1317 1555 1555 2.60 LINK NE2 HIS A 142 ZN ZN A1321 1555 1555 2.19 LINK NE2 HIS A 146 ZN ZN A1321 1555 1555 2.09 LINK OE1 GLU A 166 ZN ZN A1321 1555 1555 2.17 LINK OE1 GLU A 177 CA CA A1317 1555 1555 2.65 LINK OE2 GLU A 177 CA CA A1317 1555 1555 2.80 LINK OE2 GLU A 177 CA CA A1318 1555 1555 2.50 LINK O ASN A 183 CA CA A1318 1555 1555 2.46 LINK OD1 ASP A 185 CA CA A1317 1555 1555 2.67 LINK OD2 ASP A 185 CA CA A1318 1555 1555 2.50 LINK O GLU A 187 CA CA A1317 1555 1555 2.50 LINK OE1 GLU A 190 CA CA A1317 1555 1555 2.72 LINK OE2 GLU A 190 CA CA A1317 1555 1555 2.73 LINK OE2 GLU A 190 CA CA A1318 1555 1555 2.52 LINK O TYR A 193 CA CA A1320 1555 1555 2.55 LINK O THR A 194 CA CA A1320 1555 1555 2.54 LINK OG1 THR A 194 CA CA A1320 1555 1555 2.61 LINK O ILE A 197 CA CA A1320 1555 1555 2.47 LINK OD1 ASP A 200 CA CA A1320 1555 1555 2.50 LINK CA CA A1317 O HOH A2100 1555 1555 2.84 LINK CA CA A1318 O HOH A2108 1555 1555 2.64 LINK CA CA A1318 O HOH A2109 1555 1555 2.73 LINK CA CA A1319 O HOH A2014 1555 1555 2.82 LINK CA CA A1319 O HOH A2052 1555 1555 2.73 LINK CA CA A1319 O HOH A2041 1555 1555 2.80 LINK CA CA A1320 O HOH A2107 1555 1555 2.69 LINK CA CA A1320 O HOH A2112 1555 1555 2.86 CISPEP 1 LEU A 50 PRO A 51 0 0.25 SITE 1 AC1 6 ASP A 138 GLU A 177 ASP A 185 GLU A 187 SITE 2 AC1 6 GLU A 190 HOH A2100 SITE 1 AC2 6 GLU A 177 ASN A 183 ASP A 185 GLU A 190 SITE 2 AC2 6 HOH A2108 HOH A2109 SITE 1 AC3 6 ASP A 57 ASP A 59 GLN A 61 HOH A2014 SITE 2 AC3 6 HOH A2041 HOH A2052 SITE 1 AC4 6 TYR A 193 THR A 194 ILE A 197 ASP A 200 SITE 2 AC4 6 HOH A2107 HOH A2112 SITE 1 AC5 4 HIS A 142 HIS A 146 GLU A 166 SCN A1322 SITE 1 AC6 5 TYR A 157 GLU A 166 HIS A 231 ZN A1321 SITE 2 AC6 5 HOH A2169 SITE 1 AC7 10 ASN A 111 ASN A 112 ALA A 113 PHE A 130 SITE 2 AC7 10 GLU A 143 LEU A 202 ARG A 203 HIS A 231 SITE 3 AC7 10 HOH A2169 HOH A2170 CRYST1 93.170 93.170 130.630 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010733 0.006197 0.000000 0.00000 SCALE2 0.000000 0.012393 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007655 0.00000