PDB Short entry for 1H4L HEADER KINASE/KINASE ACTIVATOR 11-MAY-01 1H4L TITLE STRUCTURE AND REGULATION OF THE CDK5-P25(NCK5A) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN KINASE 5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TAU PROTEIN KINASE II CATALYTIC SUBUNIT, CDK5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CYCLIN-DEPENDENT KINASE 5 ACTIVATOR; COMPND 8 CHAIN: D, E; COMPND 9 FRAGMENT: RESIDUES 147-293; COMPND 10 SYNONYM: CDK5 ACTIVATOR 1, CYCLIN-DEPENDENT KINASE 5 REGULATORY COMPND 11 SUBUNIT 1, TAU PROTEIN KINASE II 23 KDA SUBUNIT, TPKII REGULATORY COMPND 12 SUBUNIT, P23, P25, P35; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAC4X-1; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PBAC4X-1 KEYWDS KINASE-KINASE ACTIVATOR COMPLEX, COMPLEX(CYCLINS-CDK), CYCLINS, KEYWDS 2 CYCLIN-DEPENDENT KINASES, CDK5, P35, P25, TRANSFERASE, ATP-BINDING, KEYWDS 3 CELL CYCLE, CELL DIVISION, PHOSPHORYLATION EXPDTA X-RAY DIFFRACTION AUTHOR C.TARRICONE,R.DHAVAN,J.PENG,L.B.ARECES,L.-H.TSAI,A.MUSACCHIO REVDAT 6 13-DEC-23 1H4L 1 REMARK REVDAT 5 24-JUL-19 1H4L 1 REMARK REVDAT 4 10-JUL-19 1H4L 1 REMARK REVDAT 3 08-MAY-19 1H4L 1 REMARK ATOM REVDAT 2 24-FEB-09 1H4L 1 VERSN REVDAT 1 14-AUG-02 1H4L 0 JRNL AUTH C.TARRICONE,R.DHAVAN,J.PENG,L.B.ARECES,L.-H.TSAI,A.MUSACCHIO JRNL TITL STRUCTURE AND REGULATION OF THE CDK5-P25(NCK5A) COMPLEX JRNL REF MOL.CELL V. 8 657 2001 JRNL REFN ISSN 1097-2765 JRNL PMID 11583627 JRNL DOI 10.1016/S1097-2765(01)00343-4 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1578110.040 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 30224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1506 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4814 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 233 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.027 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6866 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.83000 REMARK 3 B22 (A**2) : -7.23000 REMARK 3 B33 (A**2) : 4.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.80000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.37 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.51 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.840 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 42.27 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1H4L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAY-01. REMARK 100 THE DEPOSITION ID IS D_1290008025. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.60 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0079 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32449 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 2.260 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1FIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICROSEEDING - PEG3350, 100 MM TRIS PH REMARK 280 7.6, 200 MM KI, 10 MM DTT, PROTEIN CONC.:7 MG/ML HANGING DROP 2+ REMARK 280 2 UL. TEMPERATURE 293K., PH 7.60, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.54500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.54500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 11 REMARK 465 GLU A 12 REMARK 465 GLY A 13 REMARK 465 THR A 14 REMARK 465 ASP A 39 REMARK 465 ASP A 40 REMARK 465 ASP A 41 REMARK 465 GLU A 42 REMARK 465 ASP A 288 REMARK 465 PHE A 289 REMARK 465 CYS A 290 REMARK 465 PRO A 291 REMARK 465 PRO A 292 REMARK 465 MET B 1 REMARK 465 GLY B 11 REMARK 465 GLU B 12 REMARK 465 GLY B 13 REMARK 465 THR B 14 REMARK 465 ASP B 39 REMARK 465 ASP B 40 REMARK 465 ASP B 41 REMARK 465 GLU B 42 REMARK 465 ASP B 288 REMARK 465 PHE B 289 REMARK 465 CYS B 290 REMARK 465 PRO B 291 REMARK 465 PRO B 292 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER D 147 OG REMARK 470 SER E 147 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 253 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 PRO B 228 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 GLY E 189 N - CA - C ANGL. DEV. = -19.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 3 29.13 -66.49 REMARK 500 LEU A 7 -147.36 -134.49 REMARK 500 ARG A 24 -39.57 64.08 REMARK 500 VAL A 30 -162.30 -121.46 REMARK 500 ARG A 34 101.01 51.99 REMARK 500 SER A 93 -73.25 -49.94 REMARK 500 CYS A 94 -168.81 -79.38 REMARK 500 ASN A 121 44.55 70.38 REMARK 500 ASP A 126 47.89 -154.28 REMARK 500 ASN A 137 5.28 -63.26 REMARK 500 ASP A 144 75.93 53.14 REMARK 500 PRO A 154 92.78 -57.47 REMARK 500 TYR A 158 -120.77 -101.66 REMARK 500 GLU A 161 55.58 -94.00 REMARK 500 VAL A 163 126.90 67.70 REMARK 500 SER A 180 -164.11 -117.53 REMARK 500 ALA A 196 31.12 -84.00 REMARK 500 ALA A 198 7.95 -56.73 REMARK 500 THR A 245 36.78 -68.65 REMARK 500 THR A 246 -5.76 -50.16 REMARK 500 VAL A 252 72.33 -165.20 REMARK 500 LYS A 254 43.76 -76.05 REMARK 500 ASN A 256 -177.12 -61.32 REMARK 500 LEU A 267 40.68 -93.52 REMARK 500 LYS B 6 157.42 -46.12 REMARK 500 LEU B 7 -144.25 -146.51 REMARK 500 ARG B 24 -29.68 50.16 REMARK 500 HIS B 27 29.80 41.69 REMARK 500 SER B 93 -82.43 -56.16 REMARK 500 ASN B 95 46.18 -88.64 REMARK 500 ASN B 121 44.48 75.36 REMARK 500 ARG B 125 10.17 59.20 REMARK 500 ASP B 126 40.37 -141.99 REMARK 500 ASP B 144 73.32 52.72 REMARK 500 PRO B 154 99.45 -48.99 REMARK 500 TYR B 158 -130.33 -92.79 REMARK 500 GLU B 161 55.65 -90.03 REMARK 500 VAL B 163 133.70 72.68 REMARK 500 SER B 180 -160.76 -111.63 REMARK 500 ASN B 197 -105.87 -68.56 REMARK 500 TRP B 227 71.82 -155.83 REMARK 500 THR B 245 27.47 -65.63 REMARK 500 THR B 246 21.73 -56.28 REMARK 500 LEU B 248 -14.72 -23.27 REMARK 500 VAL B 252 63.79 -154.75 REMARK 500 LYS B 254 34.10 -64.81 REMARK 500 LEU B 267 34.42 -91.94 REMARK 500 TYR B 285 -36.33 -38.39 REMARK 500 THR D 148 -92.01 -41.18 REMARK 500 SER D 149 -68.17 -14.67 REMARK 500 REMARK 500 THIS ENTRY HAS 61 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LFR RELATED DB: PDB REMARK 900 THEORETICAL STRUCTURE OF HUMAN-CYCLIN DEPENDENT KINASE 5(CDK5) DBREF 1H4L A 1 292 UNP Q00535 CDK5_HUMAN 1 292 DBREF 1H4L B 1 292 UNP Q00535 CDK5_HUMAN 1 292 DBREF 1H4L D 147 293 UNP Q15078 CD5R_HUMAN 147 293 DBREF 1H4L E 147 293 UNP Q15078 CD5R_HUMAN 147 293 SEQADV 1H4L ALA A 199 UNP Q00535 GLY 199 CONFLICT SEQADV 1H4L ALA B 199 UNP Q00535 GLY 199 CONFLICT SEQRES 1 A 292 MET GLN LYS TYR GLU LYS LEU GLU LYS ILE GLY GLU GLY SEQRES 2 A 292 THR TYR GLY THR VAL PHE LYS ALA LYS ASN ARG GLU THR SEQRES 3 A 292 HIS GLU ILE VAL ALA LEU LYS ARG VAL ARG LEU ASP ASP SEQRES 4 A 292 ASP ASP GLU GLY VAL PRO SER SER ALA LEU ARG GLU ILE SEQRES 5 A 292 CYS LEU LEU LYS GLU LEU LYS HIS LYS ASN ILE VAL ARG SEQRES 6 A 292 LEU HIS ASP VAL LEU HIS SER ASP LYS LYS LEU THR LEU SEQRES 7 A 292 VAL PHE GLU PHE CYS ASP GLN ASP LEU LYS LYS TYR PHE SEQRES 8 A 292 ASP SER CYS ASN GLY ASP LEU ASP PRO GLU ILE VAL LYS SEQRES 9 A 292 SER PHE LEU PHE GLN LEU LEU LYS GLY LEU GLY PHE CYS SEQRES 10 A 292 HIS SER ARG ASN VAL LEU HIS ARG ASP LEU LYS PRO GLN SEQRES 11 A 292 ASN LEU LEU ILE ASN ARG ASN GLY GLU LEU LYS LEU ALA SEQRES 12 A 292 ASP PHE GLY LEU ALA ARG ALA PHE GLY ILE PRO VAL ARG SEQRES 13 A 292 CYS TYR SER ALA GLU VAL VAL THR LEU TRP TYR ARG PRO SEQRES 14 A 292 PRO ASP VAL LEU PHE GLY ALA LYS LEU TYR SER THR SER SEQRES 15 A 292 ILE ASP MET TRP SER ALA GLY CYS ILE PHE ALA GLU LEU SEQRES 16 A 292 ALA ASN ALA ALA ARG PRO LEU PHE PRO GLY ASN ASP VAL SEQRES 17 A 292 ASP ASP GLN LEU LYS ARG ILE PHE ARG LEU LEU GLY THR SEQRES 18 A 292 PRO THR GLU GLU GLN TRP PRO SER MET THR LYS LEU PRO SEQRES 19 A 292 ASP TYR LYS PRO TYR PRO MET TYR PRO ALA THR THR SER SEQRES 20 A 292 LEU VAL ASN VAL VAL PRO LYS LEU ASN ALA THR GLY ARG SEQRES 21 A 292 ASP LEU LEU GLN ASN LEU LEU LYS CYS ASN PRO VAL GLN SEQRES 22 A 292 ARG ILE SER ALA GLU GLU ALA LEU GLN HIS PRO TYR PHE SEQRES 23 A 292 SER ASP PHE CYS PRO PRO SEQRES 1 B 292 MET GLN LYS TYR GLU LYS LEU GLU LYS ILE GLY GLU GLY SEQRES 2 B 292 THR TYR GLY THR VAL PHE LYS ALA LYS ASN ARG GLU THR SEQRES 3 B 292 HIS GLU ILE VAL ALA LEU LYS ARG VAL ARG LEU ASP ASP SEQRES 4 B 292 ASP ASP GLU GLY VAL PRO SER SER ALA LEU ARG GLU ILE SEQRES 5 B 292 CYS LEU LEU LYS GLU LEU LYS HIS LYS ASN ILE VAL ARG SEQRES 6 B 292 LEU HIS ASP VAL LEU HIS SER ASP LYS LYS LEU THR LEU SEQRES 7 B 292 VAL PHE GLU PHE CYS ASP GLN ASP LEU LYS LYS TYR PHE SEQRES 8 B 292 ASP SER CYS ASN GLY ASP LEU ASP PRO GLU ILE VAL LYS SEQRES 9 B 292 SER PHE LEU PHE GLN LEU LEU LYS GLY LEU GLY PHE CYS SEQRES 10 B 292 HIS SER ARG ASN VAL LEU HIS ARG ASP LEU LYS PRO GLN SEQRES 11 B 292 ASN LEU LEU ILE ASN ARG ASN GLY GLU LEU LYS LEU ALA SEQRES 12 B 292 ASP PHE GLY LEU ALA ARG ALA PHE GLY ILE PRO VAL ARG SEQRES 13 B 292 CYS TYR SER ALA GLU VAL VAL THR LEU TRP TYR ARG PRO SEQRES 14 B 292 PRO ASP VAL LEU PHE GLY ALA LYS LEU TYR SER THR SER SEQRES 15 B 292 ILE ASP MET TRP SER ALA GLY CYS ILE PHE ALA GLU LEU SEQRES 16 B 292 ALA ASN ALA ALA ARG PRO LEU PHE PRO GLY ASN ASP VAL SEQRES 17 B 292 ASP ASP GLN LEU LYS ARG ILE PHE ARG LEU LEU GLY THR SEQRES 18 B 292 PRO THR GLU GLU GLN TRP PRO SER MET THR LYS LEU PRO SEQRES 19 B 292 ASP TYR LYS PRO TYR PRO MET TYR PRO ALA THR THR SER SEQRES 20 B 292 LEU VAL ASN VAL VAL PRO LYS LEU ASN ALA THR GLY ARG SEQRES 21 B 292 ASP LEU LEU GLN ASN LEU LEU LYS CYS ASN PRO VAL GLN SEQRES 22 B 292 ARG ILE SER ALA GLU GLU ALA LEU GLN HIS PRO TYR PHE SEQRES 23 B 292 SER ASP PHE CYS PRO PRO SEQRES 1 D 147 SER THR SER GLU LEU LEU ARG CYS LEU GLY GLU PHE LEU SEQRES 2 D 147 CYS ARG ARG CYS TYR ARG LEU LYS HIS LEU SER PRO THR SEQRES 3 D 147 ASP PRO VAL LEU TRP LEU ARG SER VAL ASP ARG SER LEU SEQRES 4 D 147 LEU LEU GLN GLY TRP GLN ASP GLN GLY PHE ILE THR PRO SEQRES 5 D 147 ALA ASN VAL VAL PHE LEU TYR MET LEU CYS ARG ASP VAL SEQRES 6 D 147 ILE SER SER GLU VAL GLY SER ASP HIS GLU LEU GLN ALA SEQRES 7 D 147 VAL LEU LEU THR CYS LEU TYR LEU SER TYR SER TYR MET SEQRES 8 D 147 GLY ASN GLU ILE SER TYR PRO LEU LYS PRO PHE LEU VAL SEQRES 9 D 147 GLU SER CYS LYS GLU ALA PHE TRP ASP ARG CYS LEU SER SEQRES 10 D 147 VAL ILE ASN LEU MET SER SER LYS MET LEU GLN ILE ASN SEQRES 11 D 147 ALA ASP PRO HIS TYR PHE THR GLN VAL PHE SER ASP LEU SEQRES 12 D 147 LYS ASN GLU SER SEQRES 1 E 147 SER THR SER GLU LEU LEU ARG CYS LEU GLY GLU PHE LEU SEQRES 2 E 147 CYS ARG ARG CYS TYR ARG LEU LYS HIS LEU SER PRO THR SEQRES 3 E 147 ASP PRO VAL LEU TRP LEU ARG SER VAL ASP ARG SER LEU SEQRES 4 E 147 LEU LEU GLN GLY TRP GLN ASP GLN GLY PHE ILE THR PRO SEQRES 5 E 147 ALA ASN VAL VAL PHE LEU TYR MET LEU CYS ARG ASP VAL SEQRES 6 E 147 ILE SER SER GLU VAL GLY SER ASP HIS GLU LEU GLN ALA SEQRES 7 E 147 VAL LEU LEU THR CYS LEU TYR LEU SER TYR SER TYR MET SEQRES 8 E 147 GLY ASN GLU ILE SER TYR PRO LEU LYS PRO PHE LEU VAL SEQRES 9 E 147 GLU SER CYS LYS GLU ALA PHE TRP ASP ARG CYS LEU SER SEQRES 10 E 147 VAL ILE ASN LEU MET SER SER LYS MET LEU GLN ILE ASN SEQRES 11 E 147 ALA ASP PRO HIS TYR PHE THR GLN VAL PHE SER ASP LEU SEQRES 12 E 147 LYS ASN GLU SER FORMUL 5 HOH *69(H2 O) HELIX 1 1 GLY A 43 LYS A 56 1 14 HELIX 2 2 LEU A 87 CYS A 94 1 8 HELIX 3 3 ASP A 99 ARG A 120 1 22 HELIX 4 4 LYS A 128 GLN A 130 5 3 HELIX 5 5 ASP A 144 ALA A 148 5 5 HELIX 6 6 THR A 164 ARG A 168 5 5 HELIX 7 7 PRO A 169 PHE A 174 1 6 HELIX 8 8 THR A 181 ALA A 196 1 16 HELIX 9 9 ASP A 207 GLY A 220 1 14 HELIX 10 10 TRP A 227 LEU A 233 5 7 HELIX 11 11 SER A 247 VAL A 252 5 6 HELIX 12 12 ASN A 256 LEU A 267 1 12 HELIX 13 13 ASN A 270 ARG A 274 5 5 HELIX 14 14 SER A 276 GLN A 282 1 7 HELIX 15 15 GLY B 43 GLU B 57 1 15 HELIX 16 16 LEU B 87 CYS B 94 1 8 HELIX 17 17 ASP B 99 ARG B 120 1 22 HELIX 18 18 LYS B 128 GLN B 130 5 3 HELIX 19 19 ASP B 144 ALA B 148 5 5 HELIX 20 20 THR B 164 ARG B 168 5 5 HELIX 21 21 PRO B 169 PHE B 174 1 6 HELIX 22 22 THR B 181 ASN B 197 1 17 HELIX 23 23 ASP B 207 GLY B 220 1 14 HELIX 24 24 SER B 247 VAL B 251 5 5 HELIX 25 25 ASN B 256 LEU B 267 1 12 HELIX 26 26 ASN B 270 ARG B 274 5 5 HELIX 27 27 SER B 276 GLN B 282 1 7 HELIX 28 28 SER D 147 CYS D 163 1 17 HELIX 29 29 PRO D 171 LEU D 185 1 15 HELIX 30 30 THR D 197 ILE D 212 1 16 HELIX 31 31 SER D 218 GLY D 238 1 21 HELIX 32 32 CYS D 253 SER D 269 1 17 HELIX 33 33 MET D 268 ASP D 278 1 11 HELIX 34 34 ASP D 278 ASN D 291 1 14 HELIX 35 35 SER E 147 CYS E 163 1 17 HELIX 36 36 PRO E 171 LEU E 187 1 17 HELIX 37 37 THR E 197 ILE E 212 1 16 HELIX 38 38 SER E 218 GLY E 238 1 21 HELIX 39 39 CYS E 253 SER E 269 1 17 HELIX 40 40 MET E 268 ASP E 278 1 11 HELIX 41 41 ASP E 278 GLU E 292 1 15 SHEET 1 AA 5 GLU A 5 LYS A 6 0 SHEET 2 AA 5 PHE A 19 LYS A 22 -1 O LYS A 22 N GLU A 5 SHEET 3 AA 5 ILE A 29 LEU A 32 -1 O VAL A 30 N ALA A 21 SHEET 4 AA 5 LYS A 75 GLU A 81 -1 O PHE A 80 N ALA A 31 SHEET 5 AA 5 VAL A 35 ARG A 36 -1 O VAL A 35 N LEU A 76 SHEET 1 AB 5 GLU A 5 LYS A 6 0 SHEET 2 AB 5 PHE A 19 LYS A 22 -1 O LYS A 22 N GLU A 5 SHEET 3 AB 5 ILE A 29 LEU A 32 -1 O VAL A 30 N ALA A 21 SHEET 4 AB 5 LYS A 75 GLU A 81 -1 O PHE A 80 N ALA A 31 SHEET 5 AB 5 LEU A 66 SER A 72 -1 N HIS A 67 O VAL A 79 SHEET 1 AC 3 GLN A 85 ASP A 86 0 SHEET 2 AC 3 LEU A 132 ILE A 134 -1 O ILE A 134 N GLN A 85 SHEET 3 AC 3 LEU A 140 LEU A 142 -1 O LYS A 141 N LEU A 133 SHEET 1 AD 2 VAL A 122 LEU A 123 0 SHEET 2 AD 2 ARG A 149 ALA A 150 -1 O ARG A 149 N LEU A 123 SHEET 1 BA 5 GLU B 5 LYS B 9 0 SHEET 2 BA 5 VAL B 18 LYS B 22 -1 O LYS B 20 N LEU B 7 SHEET 3 BA 5 ILE B 29 ARG B 36 -1 O VAL B 30 N ALA B 21 SHEET 4 BA 5 LYS B 75 GLU B 81 -1 O LEU B 76 N VAL B 35 SHEET 5 BA 5 LEU B 66 HIS B 71 -1 N HIS B 67 O VAL B 79 SHEET 1 BB 3 GLN B 85 ASP B 86 0 SHEET 2 BB 3 LEU B 132 ILE B 134 -1 O ILE B 134 N GLN B 85 SHEET 3 BB 3 LEU B 140 LEU B 142 -1 O LYS B 141 N LEU B 133 SHEET 1 BC 2 VAL B 122 LEU B 123 0 SHEET 2 BC 2 ARG B 149 ALA B 150 -1 O ARG B 149 N LEU B 123 CRYST1 149.090 89.760 82.570 90.00 93.08 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006707 0.000000 0.000361 0.00000 SCALE2 0.000000 0.011141 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012128 0.00000 MTRIX1 1 0.993760 0.016980 0.110210 -1.77662 1 MTRIX2 1 0.015630 -0.999790 0.013080 -28.69763 1 MTRIX3 1 0.110410 -0.011280 -0.993820 36.80953 1