PDB Short entry for 1H5V HEADER HYDROLASE 28-MAY-01 1H5V TITLE THIOPENTASACCHARIDE COMPLEX OF THE ENDOGLUCANASE CEL5A FROM BACILLUS TITLE 2 AGARADHARENS AT 1.1 A RESOLUTION IN THE TETRAGONAL CRYSTAL FORM CAVEAT 1H5V GLC B 5 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOGLUCANASE 5A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC CORE DOMAIN RESIDUES 27-331; COMPND 5 SYNONYM: ENDO-1,4-BETA-GLUCANASE, CELLULASE; COMPND 6 EC: 3.2.1.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS AGARADHAERENS; SOURCE 3 ORGANISM_TAXID: 76935; SOURCE 4 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1423; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: PL2306; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PMOL995; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: THERMAMYL-AMYLASE PROMOT KEYWDS HYDROLASE, CELLULASE, ENDOGLUCANASE, THIOOLIGOSACCHARIDE EXPDTA X-RAY DIFFRACTION AUTHOR A.VARROT,G.SULZENBACHER,M.SCHULEIN,H.DRIGUEZ,G.J.DAVIES REVDAT 6 13-DEC-23 1H5V 1 HETSYN REVDAT 5 29-JUL-20 1H5V 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 24-OCT-18 1H5V 1 SOURCE REVDAT 3 24-FEB-09 1H5V 1 VERSN REVDAT 2 17-MAR-05 1H5V 1 JRNL REMARK SEQADV REVDAT 1 23-MAY-02 1H5V 0 JRNL AUTH A.VARROT,M.SCHULEIN,S.FRUCHARD,H.DRIGUEZ,G.J.DAVIES JRNL TITL ATOMIC RESOLUTION STRUCTURE OF ENDOGLUCANASE CEL5A IN JRNL TITL 2 COMPLEX WITH METHYL JRNL TITL 3 4,4II,4III,4IV-TETRATHIO-ALPHA-CELLOPENTOSIDE HIGHLIGHTS THE JRNL TITL 4 ALTERNATIVE BINDING MODES TARGETED BY SUBSTRATE MIMICS JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 57 1739 2001 JRNL REFN ISSN 0907-4449 JRNL PMID 11679762 JRNL DOI 10.1107/S0907444901013993 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 148418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.121 REMARK 3 R VALUE (WORKING SET) : 0.120 REMARK 3 FREE R VALUE : 0.138 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7867 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2382 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 537 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.032 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.018 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.722 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FIRST THREE RESIDUES DUE TO DISORD REMARK 4 REMARK 4 1H5V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAY-01. REMARK 100 THE DEPOSITION ID IS D_1290008119. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND(111)GE(220) REMARK 200 OPTICS : TORROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 155682 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.28800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1QHZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (20MGML-1) WAS CRYSTALLISED REMARK 280 FROM 28% PEG400 AS PRECIPITANT, 100MM HEPES AT PH 7.0 AS BUFFER REMARK 280 AND 200 MM CACL2. THE PROTEIN WAS INCUBATED WITH THE 1MM OF REMARK 280 SUBSTRATE FOR AN HOUR PRIOR TO COCRYSTALLISATIOM, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.73550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.58450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.58450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.60325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.58450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.58450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.86775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.58450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.58450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 101.60325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.58450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.58450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.86775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.73550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2061 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 ASP A 2 REMARK 465 TYR A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 114 CD GLU A 114 OE1 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 103 -76.99 -158.39 REMARK 500 ALA A 137 93.18 -165.51 REMARK 500 ASN A 188 61.78 -154.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 62 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2021 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A2101 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A2156 DISTANCE = 6.18 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 310 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 14 O REMARK 620 2 HOH A2032 O 81.4 REMARK 620 3 HOH A2033 O 113.1 65.7 REMARK 620 4 HOH A2034 O 83.1 151.2 143.2 REMARK 620 5 HOH A2036 O 106.3 79.6 121.1 81.7 REMARK 620 6 HOH A2173 O 163.0 115.6 76.4 81.3 78.2 REMARK 620 7 HOH A2383 O 75.4 113.3 68.2 85.9 167.1 96.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 312 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 18 OE2 REMARK 620 2 HOH A2024 O 144.8 REMARK 620 3 HOH A2044 O 130.7 53.1 REMARK 620 4 HOH A2045 O 100.7 107.7 62.3 REMARK 620 5 HOH A2046 O 53.9 91.0 108.5 140.3 REMARK 620 6 HOH A2203 O 117.7 40.3 35.0 95.7 76.1 REMARK 620 7 HOH A2234 O 121.4 60.2 106.1 119.4 100.2 99.8 REMARK 620 8 HOH A2453 O 84.8 108.6 141.5 101.8 104.9 148.4 48.6 REMARK 620 9 HOH A2455 O 125.3 88.8 63.2 31.0 169.4 97.1 88.9 85.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 308 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 28 OE1 REMARK 620 2 ASN A 256 OD1 82.1 REMARK 620 3 HOH A2085 O 71.0 127.1 REMARK 620 4 HOH A2090 O 65.1 139.6 64.9 REMARK 620 5 HOH A2206 O 145.5 123.5 102.7 81.3 REMARK 620 6 HOH A2446 O 97.1 81.8 144.5 79.7 67.9 REMARK 620 7 HOH A2458 O 150.2 70.2 117.5 144.6 63.5 89.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 314 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 73 O REMARK 620 2 HOH A2081 O 147.2 REMARK 620 3 HOH A2082 O 104.8 91.1 REMARK 620 4 HOH A2186 O 81.0 130.1 82.9 REMARK 620 5 HOH A2189 O 75.1 84.8 170.9 106.0 REMARK 620 6 HOH A2190 O 70.9 86.4 74.9 137.7 96.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 313 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 75 OD2 REMARK 620 2 HOH A2085 O 88.2 REMARK 620 3 HOH A2106 O 135.6 131.1 REMARK 620 4 HOH A2202 O 79.0 123.0 63.1 REMARK 620 5 HOH A2517 O 83.4 96.7 107.2 135.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD1 REMARK 620 2 ASP A 120 OD2 50.2 REMARK 620 3 GLU A 124 OE2 89.6 87.2 REMARK 620 4 HOH A2287 O 86.1 88.7 175.4 REMARK 620 5 HOH A2292 O 128.7 78.5 89.5 91.9 REMARK 620 6 HOH A2346 O 82.3 131.8 84.1 96.9 148.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 306 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 127 O REMARK 620 2 ASP A 166 OD1 90.8 REMARK 620 3 ASN A 168 OD1 167.9 80.5 REMARK 620 4 ASN A 169 OD1 111.0 78.1 75.5 REMARK 620 5 ASN A 169 ND2 77.5 76.9 108.3 33.6 REMARK 620 6 HOH A2027 O 96.1 150.6 95.6 72.7 76.8 REMARK 620 7 HOH A2295 O 87.2 104.0 86.9 161.7 164.6 104.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 307 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 157 OE1 REMARK 620 2 ASP A 243 OD1 89.3 REMARK 620 3 ASP A 243 OD2 102.5 51.1 REMARK 620 4 HOH A2337 O 54.7 83.7 57.0 REMARK 620 5 HOH A2338 O 78.9 151.7 156.6 109.1 REMARK 620 6 HOH A2433 O 96.2 130.9 80.2 61.5 76.4 REMARK 620 7 HOH A2434 O 85.8 73.2 123.1 134.5 80.3 155.7 REMARK 620 8 HOH A2439 O 170.0 93.6 86.8 135.1 94.2 89.1 85.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 309 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2117 O REMARK 620 2 HOH A2120 O 72.8 REMARK 620 3 HOH A2250 O 132.0 84.4 REMARK 620 4 HOH A2409 O 131.6 155.4 76.5 REMARK 620 5 HOH A2410 O 69.6 112.6 157.3 82.7 REMARK 620 6 HOH A2412 O 135.7 78.3 76.0 82.2 92.2 REMARK 620 7 HOH A2484 O 72.2 115.3 80.9 77.1 103.6 151.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 311 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2083 O REMARK 620 2 HOH A2225 O 90.5 REMARK 620 3 HOH A2280 O 72.0 86.6 REMARK 620 4 HOH A2442 O 141.9 89.4 70.0 REMARK 620 5 HOH A2444 O 134.1 44.2 94.1 52.1 REMARK 620 6 HOH A2447 O 143.9 79.5 140.6 73.2 51.1 REMARK 620 7 HOH A2449 O 72.3 103.3 143.0 144.1 118.0 76.4 REMARK 620 8 HOH A2514 O 104.6 164.8 99.1 79.5 120.9 87.3 80.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 315 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2189 O REMARK 620 2 HOH A2195 O 147.3 REMARK 620 3 HOH A2196 O 121.2 41.5 REMARK 620 4 HOH A2511 O 139.2 73.5 89.3 REMARK 620 5 HOH A2513 O 80.0 102.7 141.6 92.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 316 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2041 O REMARK 620 2 HOH A2208 O 65.5 REMARK 620 3 HOH A2409 O 79.2 127.2 REMARK 620 4 HOH A2483 O 86.6 86.6 130.6 REMARK 620 5 HOH A2484 O 134.1 147.9 84.7 72.1 REMARK 620 N 1 2 3 4 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HF5 RELATED DB: PDB REMARK 900 2-DEOXY-2-FLURO-B-D-CELLOTRIOSYL/ENZYME INTERMEDIATE COMPLEX OF THE REMARK 900 ENDOGLUCANASE CEL5A FROM BACILLUS AGARADHEARANS AT 1.08 ANGSTROM REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1HF6 RELATED DB: PDB REMARK 900 ENDOGLUCANASE CEL5A FROM BACILLUS AGARADHAERENS IN THE ORTHORHOMBIC REMARK 900 CRYSTAL FORM IN COMPLEX WITH CELLOTRIOSE REMARK 900 RELATED ID: 1HF7 RELATED DB: PDB REMARK 900 ENDOGLUCANASE CEL5A FROM BACILLUS AGARADHAERENS IN THE ORTHORHOMBIC REMARK 900 CRYSTAL FORM IN COMPLEX WITH UNHYDROLYSED AND COVALENTLY LINKED 2,4- REMARK 900 DINITROPHENYL-2-DEOXY-2FLUORO- CELLOBIOSIDE AT 1.15 A RESOLUTION REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FIRST 26 RESIDUES IN THE DATABASE CORRESPOND TO THE REMARK 999 PROSEQUENCE. OUR NUMBERING BEGINS AT THE FIRST RESIDUE REMARK 999 OBTAINED AFTER CLEAVAGE OF THE PROSEQUENCE. REMARK 999 RESIDUES ASP A 3 AND TYR A 3 ARE SEQUENCE CONFLICTS BUT REMARK 999 SEQADV RECORDS ARE NOT GIVEN BECAUSE THESE RESIDUES ARE REMARK 999 UNOBSERVED. DBREF 1H5V A 1 304 UNP O85465 GUN5_BACAG 27 330 SEQRES 1 A 304 ASP ASP TYR SER VAL VAL GLU GLU HIS GLY GLN LEU SER SEQRES 2 A 304 ILE SER ASN GLY GLU LEU VAL ASN GLU ARG GLY GLU GLN SEQRES 3 A 304 VAL GLN LEU LYS GLY MET SER SER HIS GLY LEU GLN TRP SEQRES 4 A 304 TYR GLY GLN PHE VAL ASN TYR GLU SER MET LYS TRP LEU SEQRES 5 A 304 ARG ASP ASP TRP GLY ILE ASN VAL PHE ARG ALA ALA MET SEQRES 6 A 304 TYR THR SER SER GLY GLY TYR ILE ASP ASP PRO SER VAL SEQRES 7 A 304 LYS GLU LYS VAL LYS GLU ALA VAL GLU ALA ALA ILE ASP SEQRES 8 A 304 LEU ASP ILE TYR VAL ILE ILE ASP TRP HIS ILE LEU SER SEQRES 9 A 304 ASP ASN ASP PRO ASN ILE TYR LYS GLU GLU ALA LYS ASP SEQRES 10 A 304 PHE PHE ASP GLU MET SER GLU LEU TYR GLY ASP TYR PRO SEQRES 11 A 304 ASN VAL ILE TYR GLU ILE ALA ASN GLU PRO ASN GLY SER SEQRES 12 A 304 ASP VAL THR TRP GLY ASN GLN ILE LYS PRO TYR ALA GLU SEQRES 13 A 304 GLU VAL ILE PRO ILE ILE ARG ASN ASN ASP PRO ASN ASN SEQRES 14 A 304 ILE ILE ILE VAL GLY THR GLY THR TRP SER GLN ASP VAL SEQRES 15 A 304 HIS HIS ALA ALA ASP ASN GLN LEU ALA ASP PRO ASN VAL SEQRES 16 A 304 MET TYR ALA PHE HIS PHE TYR ALA GLY THR HIS GLY GLN SEQRES 17 A 304 ASN LEU ARG ASP GLN VAL ASP TYR ALA LEU ASP GLN GLY SEQRES 18 A 304 ALA ALA ILE PHE VAL SER GLU TRP GLY THR SER ALA ALA SEQRES 19 A 304 THR GLY ASP GLY GLY VAL PHE LEU ASP GLU ALA GLN VAL SEQRES 20 A 304 TRP ILE ASP PHE MET ASP GLU ARG ASN LEU SER TRP ALA SEQRES 21 A 304 ASN TRP SER LEU THR HIS LYS ASP GLU SER SER ALA ALA SEQRES 22 A 304 LEU MET PRO GLY ALA ASN PRO THR GLY GLY TRP THR GLU SEQRES 23 A 304 ALA GLU LEU SER PRO SER GLY THR PHE VAL ARG GLU LYS SEQRES 24 A 304 ILE ARG GLU SER ALA HET MA3 B 1 13 HET SGC B 2 11 HET SGC B 3 11 HET SSG B 4 11 HET GLC B 5 11 HET CA A 305 1 HET CA A 306 1 HET CA A 307 1 HET CA A 308 1 HET CA A 309 1 HET CA A 310 1 HET CA A 311 1 HET CA A 312 1 HET CA A 313 1 HET CA A 314 1 HET NA A 315 1 HET NA A 316 1 HETNAM MA3 METHYL 4-THIO-ALPHA-D-GLUCOPYRANOSIDE HETNAM SGC 4-THIO-BETA-D-GLUCOPYRANOSE HETNAM SSG 1,4-DITHIO-BETA-D-GLUCOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETSYN MA3 O1-METHYL-4-DEOXY-4-THIO-ALPHA-D-GLUCOSE; METHYL 4- HETSYN 2 MA3 THIO-ALPHA-D-GLUCOSIDE; METHYL 4-THIO-D-GLUCOSIDE; HETSYN 3 MA3 METHYL 4-THIO-GLUCOSIDE HETSYN SGC 4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOSE; 4-THIO-BETA-D- HETSYN 2 SGC GLUCOSE; 4-THIO-D-GLUCOSE; 4-THIO-GLUCOSE HETSYN SSG 1,4-DEOXY-1,4-DITHIO-BETA-D-GLUCOPYRANOSE; 1,4-DITHIO- HETSYN 2 SSG BETA-D-GLUCOSE; 1,4-DITHIO-D-GLUCOSE; 1,4-DITHIO- HETSYN 3 SSG GLUCOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 MA3 C7 H14 O5 S FORMUL 2 SGC 2(C6 H12 O5 S) FORMUL 2 SSG C6 H12 O4 S2 FORMUL 2 GLC C6 H12 O6 FORMUL 3 CA 10(CA 2+) FORMUL 13 NA 2(NA 1+) FORMUL 15 HOH *537(H2 O) HELIX 1 1 SER A 4 GLY A 10 1 7 HELIX 2 2 GLY A 36 GLY A 41 1 6 HELIX 3 3 GLN A 42 VAL A 44 5 3 HELIX 4 4 ASN A 45 ASP A 55 1 11 HELIX 5 5 ASP A 75 SER A 77 5 3 HELIX 6 6 VAL A 78 ASP A 93 1 16 HELIX 7 7 ASP A 107 ILE A 110 5 4 HELIX 8 8 TYR A 111 GLY A 127 1 17 HELIX 9 9 GLN A 150 ASP A 166 1 17 HELIX 10 10 THR A 175 GLN A 180 1 6 HELIX 11 11 ASP A 181 ASP A 187 1 7 HELIX 12 12 GLY A 207 GLN A 220 1 14 HELIX 13 13 PHE A 241 ARG A 255 1 15 HELIX 14 14 THR A 285 GLU A 288 5 4 HELIX 15 15 SER A 290 GLU A 302 1 13 SHEET 1 AA 2 SER A 13 SER A 15 0 SHEET 2 AA 2 GLU A 18 VAL A 20 -1 O GLU A 18 N SER A 15 SHEET 1 AB 9 LYS A 30 SER A 34 0 SHEET 2 AB 9 TRP A 259 LEU A 264 1 O TRP A 259 N GLY A 31 SHEET 3 AB 9 ILE A 224 GLY A 230 1 O VAL A 226 N ALA A 260 SHEET 4 AB 9 VAL A 195 TYR A 202 1 O TYR A 197 N PHE A 225 SHEET 5 AB 9 ILE A 171 VAL A 173 1 O ILE A 171 N MET A 196 SHEET 6 AB 9 VAL A 132 GLU A 135 1 O TYR A 134 N ILE A 172 SHEET 7 AB 9 TYR A 95 HIS A 101 1 O VAL A 96 N ILE A 133 SHEET 8 AB 9 VAL A 60 TYR A 66 1 O PHE A 61 N ILE A 97 SHEET 9 AB 9 LYS A 30 SER A 34 1 O MET A 32 N ARG A 62 LINK S4 MA3 B 1 C1 SGC B 2 1555 1555 1.80 LINK S4 SGC B 2 C1 SGC B 3 1555 1555 1.81 LINK S4 SGC B 3 C1 SSG B 4 1555 1555 1.75 LINK S4 SSG B 4 C1 GLC B 5 1555 1555 1.81 LINK O ILE A 14 CA CA A 310 1555 1555 2.33 LINK OE2 GLU A 18 CA CA A 312 1555 1555 3.20 LINK OE1 GLN A 28 CA A CA A 308 1555 1555 2.38 LINK O ILE A 73 CA CA A 314 1555 1555 2.51 LINK OD2 ASP A 75 CA CA A 313 1555 1555 2.28 LINK OD1 ASP A 120 CA CA A 305 1555 1555 2.56 LINK OD2 ASP A 120 CA CA A 305 1555 1555 2.49 LINK OE2 GLU A 124 CA CA A 305 1555 1555 2.15 LINK O GLY A 127 CA CA A 306 1555 1555 2.28 LINK OE1 GLU A 157 CA CA A 307 1555 1555 2.33 LINK OD1 ASP A 166 CA CA A 306 1555 1555 2.38 LINK OD1 ASN A 168 CA CA A 306 1555 1555 2.30 LINK OD1AASN A 169 CA CA A 306 1555 1555 2.37 LINK ND2BASN A 169 CA CA A 306 1555 1555 3.16 LINK OD1 ASP A 243 CA CA A 307 3554 1555 2.48 LINK OD2 ASP A 243 CA CA A 307 3554 1555 2.43 LINK OD1 ASN A 256 CA A CA A 308 1555 1555 2.40 LINK CA CA A 305 O HOH A2287 1555 1555 2.26 LINK CA CA A 305 O HOH A2292 1555 7465 2.22 LINK CA CA A 305 O HOH A2346 1555 1555 2.21 LINK CA CA A 306 O HOH A2027 1555 1555 2.37 LINK CA CA A 306 O HOH A2295 1555 1555 2.36 LINK CA CA A 307 O HOH A2337 1555 1555 3.10 LINK CA CA A 307 O HOH A2338 1555 1555 2.41 LINK CA CA A 307 O HOH A2433 1555 3554 2.13 LINK CA CA A 307 O HOH A2434 1555 3554 2.46 LINK CA CA A 307 O HOH A2439 1555 3554 2.34 LINK CA A CA A 308 O AHOH A2085 1555 1555 2.51 LINK CA A CA A 308 O HOH A2090 1555 1555 2.93 LINK CA A CA A 308 O HOH A2206 1555 6565 2.72 LINK CA A CA A 308 O HOH A2446 1555 1555 2.27 LINK CA A CA A 308 O HOH A2458 1555 1555 2.16 LINK CA CA A 309 O HOH A2117 1555 6565 2.45 LINK CA CA A 309 O HOH A2120 1555 6565 2.18 LINK CA CA A 309 O HOH A2250 1555 6565 2.46 LINK CA CA A 309 O AHOH A2409 1555 1555 2.37 LINK CA CA A 309 O HOH A2410 1555 1555 2.40 LINK CA CA A 309 O AHOH A2412 1555 1555 2.38 LINK CA CA A 309 O HOH A2484 1555 6565 2.32 LINK CA CA A 310 O HOH A2032 1555 1555 2.41 LINK CA CA A 310 O HOH A2033 1555 1555 2.40 LINK CA CA A 310 O HOH A2034 1555 1555 2.36 LINK CA CA A 310 O HOH A2036 1555 1555 2.41 LINK CA CA A 310 O HOH A2173 1555 1555 2.34 LINK CA CA A 310 O HOH A2383 1555 1555 2.39 LINK CA CA A 311 O HOH A2083 1555 6565 2.39 LINK CA CA A 311 O BHOH A2225 1555 6565 2.36 LINK CA CA A 311 O HOH A2280 1555 4455 2.29 LINK CA CA A 311 O AHOH A2442 1555 1555 2.45 LINK CA CA A 311 O AHOH A2444 1555 6565 1.92 LINK CA CA A 311 O AHOH A2447 1555 1555 2.54 LINK CA CA A 311 O AHOH A2449 1555 1555 2.48 LINK CA CA A 311 O HOH A2514 1555 1555 2.58 LINK CA CA A 312 O BHOH A2024 1555 1555 2.46 LINK CA CA A 312 O AHOH A2044 1555 1555 1.93 LINK CA CA A 312 O AHOH A2045 1555 1555 2.49 LINK CA CA A 312 O HOH A2046 1555 1555 2.39 LINK CA CA A 312 O AHOH A2203 1555 1555 2.64 LINK CA CA A 312 O HOH A2234 1555 1555 3.29 LINK CA CA A 312 O HOH A2453 1555 1555 3.20 LINK CA CA A 312 O BHOH A2455 1555 1555 3.30 LINK CA CA A 312 O AHOH A2456 1555 1555 2.42 LINK CA CA A 313 O AHOH A2085 1555 6465 2.36 LINK CA CA A 313 O HOH A2106 1555 1555 2.52 LINK CA CA A 313 O HOH A2202 1555 1555 2.69 LINK CA CA A 313 O HOH A2517 1555 6465 2.27 LINK CA CA A 314 O HOH A2081 1555 1555 2.26 LINK CA CA A 314 O HOH A2082 1555 1555 2.42 LINK CA CA A 314 O HOH A2186 1555 1555 2.58 LINK CA CA A 314 O HOH A2189 1555 1555 2.01 LINK CA CA A 314 O HOH A2190 1555 1555 2.22 LINK NA NA A 315 O HOH A2189 1555 1555 2.11 LINK NA NA A 315 O AHOH A2195 1555 1555 2.17 LINK NA NA A 315 O BHOH A2196 1555 1555 2.21 LINK NA NA A 315 O AHOH A2511 1555 6465 2.12 LINK NA NA A 315 O HOH A2513 1555 6465 2.13 LINK NA NA A 316 O HOH A2041 1555 1555 2.17 LINK NA NA A 316 O HOH A2208 1555 1555 2.16 LINK NA NA A 316 O AHOH A2409 1555 1555 2.20 LINK NA NA A 316 O HOH A2483 1555 6565 2.28 LINK NA NA A 316 O HOH A2484 1555 6565 2.13 CISPEP 1 TRP A 262 SER A 263 0 1.53 CRYST1 75.169 75.169 135.471 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013303 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013303 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007382 0.00000