PDB Short entry for 1HDK HEADER SERINE ESTERASE 16-NOV-00 1HDK TITLE CHARCOT-LEYDEN CRYSTAL PROTEIN - PCMBS COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: EOSINOPHIL LYSOPHOSPHOLIPASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CHARCOT-LEYDEN CRYSTAL PROTEIN, GALECTIN-10, LYSOLECITHIN COMPND 5 ACYLHYDROLASE, SERINE ESTERASE; COMPND 6 EC: 3.1.1.5; COMPND 7 OTHER_DETAILS: COVALENTLY BOUND TO PCMBS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: BLOOD; SOURCE 6 CELL: EOSINOPHIL; SOURCE 7 ORGANELLE: GRANULE; SOURCE 8 CELLULAR_LOCATION: PRIMARY GRANULE KEYWDS GALECTIN-10, SERINE ESTERASE, EOSINOPHIL LYSOPHOSPHOLIPASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.ACKERMAN,M.P.SAVAGE,L.LIU,D.D.LEONIDAS,M.A.KWATIA, AUTHOR 2 G.J.SWAMINATHAN,K.R.ACHARYA REVDAT 7 08-MAY-24 1HDK 1 REMARK LINK REVDAT 6 29-MAY-19 1HDK 1 REMARK ATOM REVDAT 5 15-APR-15 1HDK 1 JRNL REMARK VERSN DBREF REVDAT 5 2 1 HET FORMUL LINK HETATM REVDAT 4 24-FEB-09 1HDK 1 VERSN REVDAT 3 09-AUG-05 1HDK 1 COMPND REVDAT 2 04-DEC-02 1HDK 1 JRNL REVDAT 1 15-NOV-01 1HDK 0 JRNL AUTH S.J.ACKERMAN,L.LIU,M.A.KWATIA,M.P.SAVAGE,D.D.LEONIDAS, JRNL AUTH 2 G.J.SWAMINATHAN,K.R.ACHARYA JRNL TITL CHARCOT-LEYDEN CRYSTAL PROTEIN (GALECTIN-10) IS NOT A DUAL JRNL TITL 2 FUNCTION GALECTIN WITH LYSOPHOSPHOLIPASE ACTIVITY BUT BINDS JRNL TITL 3 A LYSOPHOSPHOLIPASE INHIBITOR IN A NOVEL STRUCTURAL FASHION. JRNL REF J.BIOL.CHEM. V. 277 14859 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11834744 JRNL DOI 10.1074/JBC.M200221200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.J.SWAMINATHAN,D.D.LEONIDAS,M.P.SAVAGE,S.J.ACKERMAN, REMARK 1 AUTH 2 K.R.ACHARYA REMARK 1 TITL SELECTIVE RECOGNITION OF MANNOSE BY HUMAN EOSINOPHIL REMARK 1 TITL 2 CHARCOT-LEYDEN CRYSTAL PROTEIN (GALECTIN-10): A REMARK 1 TITL 3 CRYSTALLOGRAPHIC STUDY AT 1.8 A RESOLUTION REMARK 1 REF BIOCHEMISTRY V. 38 13837 1999 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 10529229 REMARK 1 DOI 10.1021/BI990756E REMARK 1 REFERENCE 2 REMARK 1 AUTH D.D.LEONIDAS,B.L.ELBERT,Z.ZHOU,H.LEFFLER,S.J.ACKERMAN, REMARK 1 AUTH 2 K.R.ACHARYA REMARK 1 TITL CRYSTAL STRUCTURE OF HUMAN CHARCOT-LEYDEN CRYSTAL PROTEIN, REMARK 1 TITL 2 AN EOSINOPHIL LYSOPHOSPHOLIPASE IDENTIFIES IT AS A NEW REMARK 1 TITL 3 MEMBER OF THE CARBOHYDRATE-BINDING FAMILY OF GALECTINS REMARK 1 REF STRUCTURE V. 3 1379 1995 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 8747464 REMARK 1 DOI 10.1016/S0969-2126(01)00275-1 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.4 REMARK 3 NUMBER OF REFLECTIONS : 16423 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 797 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2012 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 99 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1130 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.22 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 29.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.670 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.330 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.230 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.060 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.400 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP REMARK 3 PARAMETER FILE 2 : PAR REMARK 3 PARAMETER FILE 3 : LIG REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PR REMARK 3 TOPOLOGY FILE 2 : TOP REMARK 3 TOPOLOGY FILE 3 : LIG REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED THE LAST TWO REMARK 3 RESIDUES WERE NOT VISIBLE IN THE ELECTRON DENSITY MAPS REMARK 4 REMARK 4 1HDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-NOV-00. REMARK 100 THE DEPOSITION ID IS D_1290005554. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-96 REMARK 200 TEMPERATURE (KELVIN) : 293.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16423 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.8 REMARK 200 DATA REDUNDANCY : 1.500 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.12700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-ACETATE PH7.0 100MM HANGING DROP REMARK 280 VAPOR DIFFUSION, PH 7.00, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 174.43000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.21500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 130.82250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.60750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 218.03750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 174.43000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.21500 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 43.60750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 130.82250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 218.03750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL_UNIT: MONOMERA CRYSTAL PACKING REMARK 300 DIMERIC ASSEMBLY CAN BE GENERATED USINGTHE SYMMETRY REMARK 300 OPERATION -X, Y, 1/2 -Z. THIS CASE OF REMARK 300 STRONGCRYSTAL PACKING HAS A DIFFERENCE IN ACCESSIBLE REMARK 300 SURFACE AREAPER CHAIN BETWEEN THE ISOLATED CHAIN REMARK 300 AND THAT FOR THE CHAININ THE COMPLEX OF 721.9 REMARK 300 ANGSTROM**2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2071 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2072 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 FUNCTION: MAY HAVE BOTH, LYSOPHOSPHOLIPASE AND CARBOHYDRATE- REMARK 400 BINDING ACTIVITIES. REMARK 400 CATALYTIC ACTIVITY: 2-LYSOPHOSPHATIDIYLCHOLINE + H(2)O = REMARK 400 GLYCEROPHOSPHOCHOLINE + A FATTY ACID ANION. REMARK 400 SUBCELLULAR LOCATION: LOCALIZED IN GRANULES FROM WHERE IT MAY REMARK 400 BE SECRETED OR TRANSPORTED TO OTHER LOCATIONS IN THE CELL. REMARK 400 TISSUE SPECIFICITY: EXPRESSED EXCLUSIVELY BY EOSINOPHILS AND REMARK 400 BASOPHILS. NOT DETECTED IN MONOCYTES AND NEUTROPHILS. REMARK 400 DISEASE: FORMS HEXAGONAL BIPYRAMIDAL CRYSTALS, KNOWN AS CHARCOT- REMARK 400 LEYDEN CRYSTALS, IN TISSUES AND SECRETIONS FROM SITES OF REMARK 400 EOSINOPHIL-ASSOCIATED INFLAMMATION AND SOME MYELOID LEUKEMIAS. REMARK 400 SIMILARITY: BELONGS TO THE GALAPTIN (S-LECTIN) FAMILY. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 141 REMARK 465 ARG A 142 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2033 O HOH A 2033 7555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 4 113.71 64.96 REMARK 500 LYS A 73 -152.48 -97.38 REMARK 500 LYS A 99 -179.01 -171.60 REMARK 500 ARG A 128 -153.82 90.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PMB A 929 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 29 SG REMARK 620 2 PMB A 929 C4 173.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PMB A 957 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 57 SG REMARK 620 2 PMB A 957 C4 174.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMB A 929 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMB A 957 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LCL RELATED DB: PDB REMARK 900 CHARCOT-LEYDEN CRYSTAL PROTEIN REMARK 900 RELATED ID: 1QKQ RELATED DB: PDB REMARK 900 CHARCOT-LEYDEN CRYSTAL PROTEIN - MANNOSE COMPLEX DBREF 1HDK A 2 142 UNP Q05315 LPPL_HUMAN 1 141 SEQRES 1 A 141 SER LEU LEU PRO VAL PRO TYR THR GLU ALA ALA SER LEU SEQRES 2 A 141 SER THR GLY SER THR VAL THR ILE LYS GLY ARG PRO LEU SEQRES 3 A 141 VAL CYS PHE LEU ASN GLU PRO TYR LEU GLN VAL ASP PHE SEQRES 4 A 141 HIS THR GLU MET LYS GLU GLU SER ASP ILE VAL PHE HIS SEQRES 5 A 141 PHE GLN VAL CYS PHE GLY ARG ARG VAL VAL MET ASN SER SEQRES 6 A 141 ARG GLU TYR GLY ALA TRP LYS GLN GLN VAL GLU SER LYS SEQRES 7 A 141 ASN MET PRO PHE GLN ASP GLY GLN GLU PHE GLU LEU SER SEQRES 8 A 141 ILE SER VAL LEU PRO ASP LYS TYR GLN VAL MET VAL ASN SEQRES 9 A 141 GLY GLN SER SER TYR THR PHE ASP HIS ARG ILE LYS PRO SEQRES 10 A 141 GLU ALA VAL LYS MET VAL GLN VAL TRP ARG ASP ILE SER SEQRES 11 A 141 LEU THR LYS PHE ASN VAL SER TYR LEU LYS ARG HET PMB A 929 11 HET PMB A 957 11 HETNAM PMB PARA-MERCURY-BENZENESULFONIC ACID FORMUL 2 PMB 2(C6 H5 HG O3 S) FORMUL 4 HOH *80(H2 O) HELIX 1 1 CYS A 29 GLU A 33 5 5 HELIX 2 2 LYS A 117 VAL A 121 5 5 SHEET 1 AA 6 TYR A 8 ALA A 11 0 SHEET 2 AA 6 MET A 123 ARG A 128 -1 O VAL A 124 N GLU A 10 SHEET 3 AA 6 TYR A 35 HIS A 41 -1 O GLN A 37 N TRP A 127 SHEET 4 AA 6 ILE A 50 CYS A 57 -1 N VAL A 51 O PHE A 40 SHEET 5 AA 6 ARG A 61 GLU A 68 -1 O ARG A 61 N CYS A 57 SHEET 6 AA 6 VAL A 76 SER A 78 -1 O VAL A 76 N MET A 64 SHEET 1 AB 6 TYR A 8 ALA A 11 0 SHEET 2 AB 6 MET A 123 ARG A 128 -1 O VAL A 124 N GLU A 10 SHEET 3 AB 6 TYR A 35 HIS A 41 -1 O GLN A 37 N TRP A 127 SHEET 4 AB 6 ILE A 50 CYS A 57 -1 N VAL A 51 O PHE A 40 SHEET 5 AB 6 ARG A 61 GLU A 68 -1 O ARG A 61 N CYS A 57 SHEET 6 AB 6 ALA A 71 TRP A 72 -1 O ALA A 71 N GLU A 68 SHEET 1 AC 5 GLN A 107 ASP A 113 0 SHEET 2 AC 5 LYS A 99 VAL A 104 -1 O TYR A 100 N PHE A 112 SHEET 3 AC 5 PHE A 89 VAL A 95 -1 O SER A 92 N MET A 103 SHEET 4 AC 5 THR A 19 PRO A 26 -1 O VAL A 20 N ILE A 93 SHEET 5 AC 5 ILE A 130 VAL A 137 -1 O SER A 131 N ARG A 25 LINK SG CYS A 29 HG PMB A 929 1555 1555 2.58 LINK SG CYS A 57 HG PMB A 957 1555 1555 2.48 CISPEP 1 VAL A 6 PRO A 7 0 0.03 SITE 1 AC1 2 CYS A 29 ASP A 85 SITE 1 AC2 5 GLU A 33 TYR A 35 CYS A 57 ARG A 60 SITE 2 AC2 5 ARG A 61 CRYST1 49.547 49.547 261.645 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020183 0.011652 0.000000 0.00000 SCALE2 0.000000 0.023305 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003822 0.00000