PDB Short entry for 1HIL HEADER IMMUNOGLOBULIN 08-JUL-92 1HIL TITLE STRUCTURAL EVIDENCE FOR INDUCED FIT AS A MECHANISM FOR TITLE 2 ANTIGEN-ANTIBODY RECOGNITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG2A-KAPPA 17/9 FAB (LIGHT CHAIN); COMPND 3 CHAIN: A, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: IGG2A-KAPPA 17/9 FAB (HEAVY CHAIN); COMPND 6 CHAIN: B, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090 KEYWDS IMMUNOGLOBULIN EXPDTA X-RAY DIFFRACTION AUTHOR J.M.RINI,I.A.WILSON REVDAT 3 24-FEB-09 1HIL 1 VERSN REVDAT 2 01-APR-03 1HIL 1 JRNL REVDAT 1 31-JAN-94 1HIL 0 JRNL AUTH J.M.RINI,U.SCHULZE-GAHMEN,I.A.WILSON JRNL TITL STRUCTURAL EVIDENCE FOR INDUCED FIT AS A MECHANISM JRNL TITL 2 FOR ANTIBODY-ANTIGEN RECOGNITION. JRNL REF SCIENCE V. 255 959 1992 JRNL REFN ISSN 0036-8075 JRNL PMID 1546293 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH U.SCHULZE-GAHMEN,J.M.RINI,J.AREVALO,E.A.STURA, REMARK 1 AUTH 2 J.H.KENTEN,I.A.WILSON REMARK 1 TITL PRELIMINARY CRYSTALLOGRAPHIC DATA, PRIMARY REMARK 1 TITL 2 SEQUENCE AND BINDING DATA FOR AN ANTI-PEPTIDE FAB REMARK 1 TITL 3 AND ITS COMPLEX WITH A SYNTHETIC PEPTIDE FROM REMARK 1 TITL 4 INFLUENZA VIRUS HEMAGGLUTININ REMARK 1 REF J.BIOL.CHEM. V. 263 17100 1988 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6605 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 3.00 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HIL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.40000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS B 130 REMARK 465 GLY B 131 REMARK 465 ASP B 132 REMARK 465 THR B 133 REMARK 465 THR B 134 REMARK 465 GLY B 135 REMARK 465 CYS D 130 REMARK 465 GLY D 131 REMARK 465 ASP D 132 REMARK 465 THR D 133 REMARK 465 THR D 134 REMARK 465 GLY D 135 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG D 228 CA C O CB CG CD NE REMARK 470 ARG D 228 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 172 NE2 HIS B 172 CD2 -0.068 REMARK 500 HIS C 198 NE2 HIS C 198 CD2 -0.067 REMARK 500 HIS D 172 NE2 HIS D 172 CD2 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 35 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 50 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP A 50 CE2 - CD2 - CG ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 54 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 TYR A 86 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 LEU A 136 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 TRP A 148 CD1 - CG - CD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 TRP A 148 CG - CD1 - NE1 ANGL. DEV. = -6.7 DEGREES REMARK 500 TRP A 148 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 TRP A 163 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 163 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 211 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TRP B 36 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP B 36 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG B 38 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 TRP B 47 CD1 - CG - CD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 TRP B 47 CG - CD1 - NE1 ANGL. DEV. = -6.8 DEGREES REMARK 500 TRP B 47 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 VAL B 63 N - CA - CB ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG B 97 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 TRP B 103 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 TRP B 157 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP B 157 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 VAL B 177 CG1 - CB - CG2 ANGL. DEV. = -10.0 DEGREES REMARK 500 TRP B 199 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TRP B 199 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 LYS C 30 CB - CG - CD ANGL. DEV. = -18.8 DEGREES REMARK 500 TRP C 35 CD1 - CG - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 TRP C 50 CD1 - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG C 54 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG C 54 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TYR C 86 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TRP C 148 CD1 - CG - CD2 ANGL. DEV. = 7.6 DEGREES REMARK 500 TRP C 148 CG - CD1 - NE1 ANGL. DEV. = -6.9 DEGREES REMARK 500 TRP C 148 CE2 - CD2 - CG ANGL. DEV. = -6.3 DEGREES REMARK 500 LEU C 160 CA - CB - CG ANGL. DEV. = 17.6 DEGREES REMARK 500 TRP C 163 CD1 - CG - CD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 TRP C 163 CB - CG - CD1 ANGL. DEV. = -8.7 DEGREES REMARK 500 TRP C 163 CG - CD1 - NE1 ANGL. DEV. = -6.2 DEGREES REMARK 500 TRP C 163 CE2 - CD2 - CG ANGL. DEV. = -6.6 DEGREES REMARK 500 TRP C 163 CG - CD2 - CE3 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP D 36 CD1 - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 TRP D 36 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 TRP D 47 CD1 - CG - CD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 TRP D 47 CG - CD1 - NE1 ANGL. DEV. = -6.5 DEGREES REMARK 500 TRP D 47 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TYR D 59 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG D 71 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 61 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 32 73.02 -101.44 REMARK 500 ALA A 51 -33.99 66.77 REMARK 500 ASP A 170 14.01 -143.51 REMARK 500 ASN B 100A -126.52 56.60 REMARK 500 ALA C 51 -37.11 66.56 REMARK 500 ALA D 88 170.34 178.70 REMARK 500 ASN D 100A -122.26 50.34 REMARK 500 PRO D 126 162.52 -49.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO D 126 VAL D 127 149.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO D 126 -13.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 REMARK 999 THE TWO MOLECULES ARE IN SEQUENTIAL ORDER IN THE COORDINATE REMARK 999 FILE. THE FAB-FRAGMENT IS NUMBERED ACCORDING TO KABAT REMARK 999 (E.A.KABAT, T.T.WU, H.M.PERRY, K.S.GOTTESMAN, AND REMARK 999 C.FOELLER, SEQUENCES OF PROTEINS OF IMMUNOLOGICAL INTEREST, REMARK 999 1991). DBREF 1HIL A 1 211 PIR A31790 A31790 1 217 DBREF 1HIL B 1 228 GB 533229 AAA38230 1 219 DBREF 1HIL C 1 211 PIR A31790 A31790 1 217 DBREF 1HIL D 1 228 GB 533229 AAA38230 1 219 SEQADV 1HIL PRO B 227 GB 533229 INSERTION SEQADV 1HIL PRO D 227 GB 533229 INSERTION SEQRES 1 A 217 ASP ILE VAL MET THR GLN SER PRO SER SER LEU THR VAL SEQRES 2 A 217 THR ALA GLY GLU LYS VAL THR MET SER CYS THR SER SER SEQRES 3 A 217 GLN SER LEU PHE ASN SER GLY LYS GLN LYS ASN TYR LEU SEQRES 4 A 217 THR TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS VAL SEQRES 5 A 217 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 A 217 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 A 217 LEU THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 A 217 TYR TYR CYS GLN ASN ASP TYR SER ASN PRO LEU THR PHE SEQRES 9 A 217 GLY GLY GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA SEQRES 10 A 217 ALA PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN SEQRES 11 A 217 LEU THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN SEQRES 12 A 217 ASN PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE SEQRES 13 A 217 ASP GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP SEQRES 14 A 217 THR ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SEQRES 15 A 217 SER THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS SEQRES 16 A 217 ASN SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SEQRES 17 A 217 SER PRO ILE VAL LYS SER PHE ASN ARG SEQRES 1 B 220 GLU VAL GLN LEU VAL GLU SER GLY GLY ASP LEU VAL LYS SEQRES 2 B 220 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 B 220 PHE SER PHE SER SER TYR GLY MET SER TRP VAL ARG GLN SEQRES 4 B 220 THR PRO ASP LYS ARG LEU GLU TRP VAL ALA THR ILE SER SEQRES 5 B 220 ASN GLY GLY GLY TYR THR TYR TYR PRO ASP SER VAL LYS SEQRES 6 B 220 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 220 LEU TYR LEU GLN MET SER SER LEU LYS SER GLU ASP SER SEQRES 8 B 220 ALA MET TYR TYR CYS ALA ARG ARG GLU ARG TYR ASP GLU SEQRES 9 B 220 ASN GLY PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 B 220 VAL SER ALA ALA LYS THR THR ALA PRO SER VAL TYR PRO SEQRES 11 B 220 LEU ALA PRO VAL CYS GLY ASP THR THR GLY SER SER VAL SEQRES 12 B 220 THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO SEQRES 13 B 220 VAL THR LEU THR TRP ASN SER GLY SER LEU SER SER GLY SEQRES 14 B 220 VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR SEQRES 15 B 220 THR LEU SER SER SER VAL THR VAL THR SER SER THR TRP SEQRES 16 B 220 PRO SER GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SEQRES 17 B 220 SER SER THR LYS VAL ASP LYS LYS ILE GLU PRO ARG SEQRES 1 C 217 ASP ILE VAL MET THR GLN SER PRO SER SER LEU THR VAL SEQRES 2 C 217 THR ALA GLY GLU LYS VAL THR MET SER CYS THR SER SER SEQRES 3 C 217 GLN SER LEU PHE ASN SER GLY LYS GLN LYS ASN TYR LEU SEQRES 4 C 217 THR TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS VAL SEQRES 5 C 217 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 C 217 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 C 217 LEU THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 C 217 TYR TYR CYS GLN ASN ASP TYR SER ASN PRO LEU THR PHE SEQRES 9 C 217 GLY GLY GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA SEQRES 10 C 217 ALA PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN SEQRES 11 C 217 LEU THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN SEQRES 12 C 217 ASN PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE SEQRES 13 C 217 ASP GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP SEQRES 14 C 217 THR ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SEQRES 15 C 217 SER THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS SEQRES 16 C 217 ASN SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SEQRES 17 C 217 SER PRO ILE VAL LYS SER PHE ASN ARG SEQRES 1 D 220 GLU VAL GLN LEU VAL GLU SER GLY GLY ASP LEU VAL LYS SEQRES 2 D 220 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 D 220 PHE SER PHE SER SER TYR GLY MET SER TRP VAL ARG GLN SEQRES 4 D 220 THR PRO ASP LYS ARG LEU GLU TRP VAL ALA THR ILE SER SEQRES 5 D 220 ASN GLY GLY GLY TYR THR TYR TYR PRO ASP SER VAL LYS SEQRES 6 D 220 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 D 220 LEU TYR LEU GLN MET SER SER LEU LYS SER GLU ASP SER SEQRES 8 D 220 ALA MET TYR TYR CYS ALA ARG ARG GLU ARG TYR ASP GLU SEQRES 9 D 220 ASN GLY PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 D 220 VAL SER ALA ALA LYS THR THR ALA PRO SER VAL TYR PRO SEQRES 11 D 220 LEU ALA PRO VAL CYS GLY ASP THR THR GLY SER SER VAL SEQRES 12 D 220 THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO SEQRES 13 D 220 VAL THR LEU THR TRP ASN SER GLY SER LEU SER SER GLY SEQRES 14 D 220 VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR SEQRES 15 D 220 THR LEU SER SER SER VAL THR VAL THR SER SER THR TRP SEQRES 16 D 220 PRO SER GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SEQRES 17 D 220 SER SER THR LYS VAL ASP LYS LYS ILE GLU PRO ARG FORMUL 5 HOH *160(H2 O) HELIX 1 1 GLN A 79 LEU A 83 5 5 HELIX 2 2 SER A 121 THR A 126 1 6 HELIX 3 3 LYS A 183 ARG A 188 1 6 HELIX 4 4 SER B 28 TYR B 32 5 5 HELIX 5 5 LYS B 83 SER B 87 5 5 HELIX 6 6 SER B 163 SER B 165 5 3 HELIX 7 7 PRO B 213 SER B 216 5 4 HELIX 8 8 ASN C 27D GLN C 29 5 5 HELIX 9 9 GLN C 79 LEU C 83 5 5 HELIX 10 10 SER C 121 THR C 126 1 6 HELIX 11 11 LYS C 183 ARG C 188 1 6 HELIX 12 12 SER D 28 TYR D 32 5 5 HELIX 13 13 LYS D 83 SER D 87 5 5 HELIX 14 14 SER D 163 SER D 165 5 3 HELIX 15 15 PRO D 213 SER D 216 5 4 SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 SER A 25 -1 N SER A 22 O SER A 7 SHEET 3 A 4 ASP A 70 ILE A 75 -1 N PHE A 71 O CYS A 23 SHEET 4 A 4 PHE A 62 SER A 67 -1 O THR A 63 N THR A 74 SHEET 1 B 5 THR A 53 ARG A 54 0 SHEET 2 B 5 LYS A 45 TYR A 49 -1 N TYR A 49 O THR A 53 SHEET 3 B 5 LEU A 33 GLN A 38 -1 O TRP A 35 N LEU A 47 SHEET 4 B 5 VAL A 85 ASN A 90 -1 O VAL A 85 N GLN A 38 SHEET 5 B 5 THR A 97 PHE A 98 -1 O THR A 97 N ASN A 90 SHEET 1 C 6 THR A 53 ARG A 54 0 SHEET 2 C 6 LYS A 45 TYR A 49 -1 N TYR A 49 O THR A 53 SHEET 3 C 6 LEU A 33 GLN A 38 -1 O TRP A 35 N LEU A 47 SHEET 4 C 6 VAL A 85 ASN A 90 -1 O VAL A 85 N GLN A 38 SHEET 5 C 6 THR A 102 LEU A 106 -1 O THR A 102 N TYR A 86 SHEET 6 C 6 SER A 10 VAL A 13 1 O LEU A 11 N GLU A 105 SHEET 1 D 2 LYS A 30 ASN A 31 0 SHEET 1 E 4 THR A 114 PHE A 118 0 SHEET 2 E 4 GLY A 129 PHE A 139 -1 O VAL A 133 N PHE A 118 SHEET 3 E 4 TYR A 173 THR A 182 -1 N TYR A 173 O PHE A 139 SHEET 4 E 4 VAL A 159 TRP A 163 -1 N LEU A 160 O THR A 178 SHEET 1 F 4 SER A 153 ARG A 155 0 SHEET 2 F 4 ASN A 145 ILE A 150 -1 O TRP A 148 N ARG A 155 SHEET 3 F 4 SER A 191 THR A 197 -1 N THR A 193 O LYS A 149 SHEET 4 F 4 ILE A 205 ASN A 210 -1 O ILE A 205 N ALA A 196 SHEET 1 G 4 GLN B 3 SER B 7 0 SHEET 2 G 4 LEU B 18 SER B 25 -1 N SER B 21 O SER B 7 SHEET 3 G 4 THR B 77 MET B 82 -1 N LEU B 78 O CYS B 22 SHEET 4 G 4 PHE B 67 ASP B 72 -1 O THR B 68 N GLN B 81 SHEET 1 H 5 THR B 57 TYR B 58 0 SHEET 2 H 5 LEU B 45 ILE B 51 -1 O THR B 50 N TYR B 58 SHEET 3 H 5 GLY B 33 GLN B 39 -1 O MET B 34 N ILE B 51 SHEET 4 H 5 ALA B 88 GLU B 96 -1 O MET B 89 N GLN B 39 SHEET 1 I 6 THR B 57 TYR B 58 0 SHEET 2 I 6 LEU B 45 ILE B 51 -1 O THR B 50 N TYR B 58 SHEET 3 I 6 GLY B 33 GLN B 39 -1 O MET B 34 N ILE B 51 SHEET 4 I 6 ALA B 88 GLU B 96 -1 O MET B 89 N GLN B 39 SHEET 5 I 6 THR B 107 VAL B 111 -1 O THR B 107 N TYR B 90 SHEET 6 I 6 LEU B 11 VAL B 12 1 N VAL B 12 O THR B 110 SHEET 1 J 4 SER B 120 LEU B 124 0 SHEET 2 J 4 SER B 137 TYR B 147 -1 N GLY B 141 O LEU B 124 SHEET 3 J 4 LEU B 184 THR B 194 -1 N TYR B 185 O TYR B 147 SHEET 4 J 4 VAL B 171 GLN B 179 -1 N HIS B 172 O SER B 190 SHEET 1 K 3 THR B 153 TRP B 157 0 SHEET 2 K 3 THR B 206 HIS B 212 -1 N ASN B 209 O THR B 156 SHEET 3 K 3 THR B 217 LYS B 222 -1 O THR B 217 N HIS B 212 SHEET 1 L 4 MET C 4 SER C 7 0 SHEET 2 L 4 VAL C 19 SER C 25 -1 N SER C 22 O SER C 7 SHEET 3 L 4 ASP C 70 ILE C 75 -1 N PHE C 71 O CYS C 23 SHEET 4 L 4 PHE C 62 SER C 67 -1 N THR C 63 O THR C 74 SHEET 1 M 5 THR C 53 ARG C 54 0 SHEET 2 M 5 LYS C 45 TYR C 49 -1 N TYR C 49 O THR C 53 SHEET 3 M 5 LEU C 33 GLN C 38 -1 O TRP C 35 N LEU C 47 SHEET 4 M 5 VAL C 85 ASN C 90 -1 O VAL C 85 N GLN C 38 SHEET 5 M 5 THR C 97 PHE C 98 -1 O THR C 97 N ASN C 90 SHEET 1 N 6 THR C 53 ARG C 54 0 SHEET 2 N 6 LYS C 45 TYR C 49 -1 N TYR C 49 O THR C 53 SHEET 3 N 6 LEU C 33 GLN C 38 -1 O TRP C 35 N LEU C 47 SHEET 4 N 6 VAL C 85 ASN C 90 -1 O VAL C 85 N GLN C 38 SHEET 5 N 6 THR C 102 LEU C 106 -1 O THR C 102 N TYR C 86 SHEET 6 N 6 SER C 10 VAL C 13 1 O LEU C 11 N GLU C 105 SHEET 1 O 2 LYS C 30 ASN C 31 0 SHEET 1 P 4 THR C 114 PHE C 118 0 SHEET 2 P 4 GLY C 129 PHE C 139 -1 O VAL C 133 N PHE C 118 SHEET 3 P 4 TYR C 173 THR C 182 -1 N TYR C 173 O PHE C 139 SHEET 4 P 4 VAL C 159 TRP C 163 -1 N LEU C 160 O THR C 178 SHEET 1 Q 4 SER C 153 ARG C 155 0 SHEET 2 Q 4 ASN C 145 ILE C 150 -1 O TRP C 148 N ARG C 155 SHEET 3 Q 4 SER C 191 THR C 197 -1 O THR C 193 N LYS C 149 SHEET 4 Q 4 ILE C 205 ASN C 210 -1 O ILE C 205 N ALA C 196 SHEET 1 R 4 GLN D 3 SER D 7 0 SHEET 2 R 4 LEU D 18 SER D 25 -1 O SER D 21 N SER D 7 SHEET 3 R 4 THR D 77 MET D 82 -1 N LEU D 78 O CYS D 22 SHEET 4 R 4 PHE D 67 ASP D 72 -1 O THR D 68 N GLN D 81 SHEET 1 S 5 THR D 57 TYR D 58 0 SHEET 2 S 5 LEU D 45 ILE D 51 -1 O THR D 50 N TYR D 58 SHEET 3 S 5 MET D 34 GLN D 39 -1 O MET D 34 N ILE D 51 SHEET 4 S 5 ALA D 88 GLU D 96 -1 O MET D 89 N GLN D 39 SHEET 1 T 6 THR D 57 TYR D 58 0 SHEET 2 T 6 LEU D 45 ILE D 51 -1 O THR D 50 N TYR D 58 SHEET 3 T 6 MET D 34 GLN D 39 -1 O MET D 34 N ILE D 51 SHEET 4 T 6 ALA D 88 GLU D 96 -1 O MET D 89 N GLN D 39 SHEET 5 T 6 THR D 107 VAL D 111 -1 O THR D 107 N TYR D 90 SHEET 6 T 6 LEU D 11 VAL D 12 1 N VAL D 12 O THR D 110 SHEET 1 U 4 SER D 120 LEU D 124 0 SHEET 2 U 4 SER D 137 TYR D 147 -1 O GLY D 141 N LEU D 124 SHEET 3 U 4 LEU D 184 THR D 194 -1 N TYR D 185 O TYR D 147 SHEET 4 U 4 VAL D 171 GLN D 179 -1 O HIS D 172 N SER D 190 SHEET 1 V 3 THR D 153 TRP D 157 0 SHEET 2 V 3 THR D 206 HIS D 212 -1 N ASN D 209 O THR D 156 SHEET 3 V 3 THR D 217 LYS D 222 -1 O THR D 217 N HIS D 212 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.27 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.54 SSBOND 3 CYS B 22 CYS B 92 1555 1555 2.33 SSBOND 4 CYS B 142 CYS B 208 1555 1555 2.41 SSBOND 5 CYS C 23 CYS C 88 1555 1555 2.35 SSBOND 6 CYS C 134 CYS C 194 1555 1555 2.47 SSBOND 7 CYS D 22 CYS D 92 1555 1555 2.36 SSBOND 8 CYS D 142 CYS D 208 1555 1555 2.50 CISPEP 1 SER A 7 PRO A 8 0 -1.01 CISPEP 2 ASN A 94 PRO A 95 0 -0.22 CISPEP 3 TYR A 140 PRO A 141 0 -1.02 CISPEP 4 PHE B 148 PRO B 149 0 -2.35 CISPEP 5 GLU B 150 PRO B 151 0 -1.26 CISPEP 6 TRP B 199 PRO B 200 0 0.71 CISPEP 7 SER C 7 PRO C 8 0 -0.71 CISPEP 8 ASN C 94 PRO C 95 0 -1.13 CISPEP 9 TYR C 140 PRO C 141 0 -0.23 CISPEP 10 PHE D 148 PRO D 149 0 -2.32 CISPEP 11 GLU D 150 PRO D 151 0 0.03 CISPEP 12 TRP D 199 PRO D 200 0 5.81 CRYST1 90.040 82.800 73.400 90.00 122.60 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011106 0.000000 0.007103 0.00000 SCALE2 0.000000 0.012077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016172 0.00000