PDB Short entry for 1HS7 HEADER ENDOCYTOSIS/EXOCYTOSIS 24-DEC-00 1HS7 TITLE VAM3P N-TERMINAL DOMAIN SOLUTION STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNTAXIN VAM3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 23-119; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-KT KEYWDS UP-AND-DOWN THREE-HELIX BUNDLE INSERTION PRECEDING PROLINE IN AN KEYWDS 2 ALPHA-HELIX, ENDOCYTOSIS-EXOCYTOSIS COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR I.DULUBOVA,T.YAMAGUCHI,Y.WANG,T.C.SUDHOF,J.RIZO REVDAT 3 23-FEB-22 1HS7 1 REMARK REVDAT 2 24-FEB-09 1HS7 1 VERSN REVDAT 1 07-MAR-01 1HS7 0 JRNL AUTH I.DULUBOVA,T.YAMAGUCHI,Y.WANG,T.C.SUDHOF,J.RIZO JRNL TITL VAM3P STRUCTURE REVEALS CONSERVED AND DIVERGENT PROPERTIES JRNL TITL 2 OF SYNTAXINS. JRNL REF NAT.STRUCT.BIOL. V. 8 258 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11224573 JRNL DOI 10.1038/85012 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1B, CNS 0.9 REMARK 3 AUTHORS : VARIAN (VNMR), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1771 TOTAL EXPERIMENTAL RESTRAINTS, REMARK 3 1565 NOE DISTANCE RESTRAINTS, 130 HYDROGEN BOND RESTRAINTS, 76 REMARK 3 DIHEDRAL ANGLE RESTRAINTS REMARK 4 REMARK 4 1HS7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-00. REMARK 100 THE DEPOSITION ID IS D_1000012558. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303 REMARK 210 PH : 6.0; 6.0 REMARK 210 IONIC STRENGTH : 20 MM PHOSPHATE; 20 MM PHOSPHATE REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM 15N-LABELED VAM3P N REMARK 210 -TERMINAL DOMAIN; 20 MM REMARK 210 PHOSPHATE PH 6.0, 30 C; 0.8 MM REMARK 210 15N,13C-LABELED VAM3P N-TERMINAL REMARK 210 DOMAIN; 20 MM PHOSPHATE PH 6.0, REMARK 210 30 C REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 2D REMARK 210 NOESY; HNHA; 3D_13C-SEPARATED_ REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.7, NMRVIEW 4.1, CNS REMARK 210 0.9 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST NOE REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 76 H GLU A 80 1.54 REMARK 500 O TYR A 62 H THR A 66 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 54 -70.51 65.84 REMARK 500 1 ASP A 56 101.72 -42.35 REMARK 500 1 GLU A 67 -48.67 -136.54 REMARK 500 1 LEU A 68 -88.55 -70.91 REMARK 500 1 ASP A 94 -71.36 -47.34 REMARK 500 1 PHE A 116 65.90 -109.83 REMARK 500 2 LYS A 54 -65.40 68.11 REMARK 500 2 ASP A 56 119.22 -39.58 REMARK 500 2 GLU A 67 -46.90 -136.60 REMARK 500 2 LEU A 68 -89.08 -72.66 REMARK 500 2 ASP A 94 -71.27 -48.06 REMARK 500 2 PHE A 116 74.05 -118.13 REMARK 500 2 PRO A 117 -178.24 -66.00 REMARK 500 3 LYS A 54 -72.34 64.26 REMARK 500 3 ASP A 56 122.21 -39.96 REMARK 500 3 GLU A 67 -50.62 -133.62 REMARK 500 3 LEU A 68 -88.14 -69.38 REMARK 500 3 ASP A 94 -71.03 -48.92 REMARK 500 3 PHE A 116 73.74 -118.13 REMARK 500 3 PRO A 117 176.79 -57.18 REMARK 500 4 LYS A 54 -77.03 62.97 REMARK 500 4 ASP A 56 107.23 -38.00 REMARK 500 4 GLU A 67 -40.46 -135.64 REMARK 500 4 LEU A 68 -87.30 -68.67 REMARK 500 4 ASP A 94 -70.50 -47.64 REMARK 500 4 PHE A 116 66.28 -110.90 REMARK 500 5 LYS A 54 -65.10 68.03 REMARK 500 5 GLU A 67 -47.10 -137.20 REMARK 500 5 LEU A 68 -88.72 -72.31 REMARK 500 5 ASP A 94 -71.10 -49.04 REMARK 500 5 PHE A 116 73.64 -117.22 REMARK 500 5 PRO A 117 -168.94 -58.29 REMARK 500 6 LYS A 54 -75.64 62.88 REMARK 500 6 ASP A 56 107.56 -35.36 REMARK 500 6 GLU A 67 -52.56 -131.39 REMARK 500 6 LEU A 68 -88.28 -65.45 REMARK 500 6 ASP A 94 -71.25 -48.67 REMARK 500 6 PHE A 116 66.41 -112.47 REMARK 500 7 GLU A 67 -48.86 -136.75 REMARK 500 7 LEU A 68 -89.05 -69.79 REMARK 500 7 ASP A 94 -72.13 -47.30 REMARK 500 7 PHE A 116 74.31 -119.22 REMARK 500 7 PRO A 117 -160.46 -64.37 REMARK 500 8 LYS A 54 -68.32 66.74 REMARK 500 8 ASP A 56 117.71 -34.39 REMARK 500 8 GLU A 67 -49.18 -134.38 REMARK 500 8 LEU A 68 -87.52 -70.04 REMARK 500 8 ASP A 94 -71.47 -48.76 REMARK 500 8 PHE A 116 72.77 -115.87 REMARK 500 8 PRO A 117 179.44 -50.32 REMARK 500 REMARK 500 THIS ENTRY HAS 122 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1HS7 A 23 119 UNP Q12241 VAM3_YEAST 23 119 SEQRES 1 A 97 THR ASN GLN LYS THR LYS GLU LEU SER ASN LEU ILE GLU SEQRES 2 A 97 THR PHE ALA GLU GLN SER ARG VAL LEU GLU LYS GLU CYS SEQRES 3 A 97 THR LYS ILE GLY SER LYS ARG ASP SER LYS GLU LEU ARG SEQRES 4 A 97 TYR LYS ILE GLU THR GLU LEU ILE PRO ASN CYS THR SER SEQRES 5 A 97 VAL ARG ASP LYS ILE GLU SER ASN ILE LEU ILE HIS GLN SEQRES 6 A 97 ASN GLY LYS LEU SER ALA ASP PHE LYS ASN LEU LYS THR SEQRES 7 A 97 LYS TYR GLN SER LEU GLN GLN SER TYR ASN GLN ARG LYS SEQRES 8 A 97 SER LEU PHE PRO LEU LYS HELIX 1 1 ASN A 24 ILE A 51 1 28 HELIX 2 2 SER A 57 GLU A 67 1 11 HELIX 3 3 GLU A 67 ASN A 82 1 16 HELIX 4 4 ILE A 83 ASN A 88 1 6 HELIX 5 5 ASN A 88 PHE A 116 1 29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000