PDB Short entry for 1HXD HEADER LIGASE 12-JAN-01 1HXD TITLE CRYSTAL STRUCTURE OF E. COLI BIOTIN REPRESSOR WITH BOUND BIOTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIRA BIFUNCTIONAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BIOTIN REPRESSOR; COMPND 5 EC: 6.3.4.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGASE, REPRESSOR, BIOTIN, DNA-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR K.KWON,E.D.STREAKER,S.RUPARELIA,D.BECKETT REVDAT 3 09-AUG-23 1HXD 1 REMARK REVDAT 2 24-FEB-09 1HXD 1 VERSN REVDAT 1 30-MAY-01 1HXD 0 JRNL AUTH L.H.WEAVER,K.KWON,D.BECKETT,B.W.MATTHEWS JRNL TITL COREPRESSOR-INDUCED ORGANIZATION AND ASSEMBLY OF THE BIOTIN JRNL TITL 2 REPRESSOR: A MODEL FOR ALLOSTERIC ACTIVATION OF A JRNL TITL 3 TRANSCRIPTIONAL REGULATOR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 98 6045 2001 JRNL REFN ISSN 0027-8424 JRNL PMID 11353844 JRNL DOI 10.1073/PNAS.111128198 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.KWON,E.D.STREAKER,S.RUPARELIA,D.BECKETT REMARK 1 TITL MULTIPLE DISORDERED LOOPS FUNCTION IN COREPRESOR-INDUCED REMARK 1 TITL 2 DIMERIZATION OF THE BIOTIN REPRESSOR REMARK 1 REF J.MOL.BIOL. V. 304 821 2000 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.2000.4249 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.P.WILSON,L.M.SHEWCHUK,R.G.BRENNAN,A.J.OTSUKA,B.W.MATTHEWS REMARK 1 TITL E. COLI BIOTIN HOLOENZYME SYNTHETASE/BIO REPRESSOR CRYSTAL REMARK 1 TITL 2 STRUCTURE DELINEATES THE BIOTIN- AND DNA-BINDING DOMAINS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 89 9257 1992 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 3 NUMBER OF REFLECTIONS : 26762 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1890 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 26762 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4712 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 59 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.018 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.800 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-01. REMARK 100 THE DEPOSITION ID IS D_1000012656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-99 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : UCSD MARK II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SDMS REMARK 200 DATA SCALING SOFTWARE : SDMS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26762 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 13.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.18300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1BIA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.60000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.60000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.45000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.45000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.45000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.45000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.60000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.45000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.45000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.60000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.45000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.45000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASP A 3 REMARK 465 ARG A 212 REMARK 465 ARG A 213 REMARK 465 VAL A 214 REMARK 465 GLU A 215 REMARK 465 GLU A 216 REMARK 465 SER A 217 REMARK 465 VAL A 218 REMARK 465 VAL A 219 REMARK 465 ASN A 220 REMARK 465 SER A 318 REMARK 465 ALA A 319 REMARK 465 GLU A 320 REMARK 465 LYS A 321 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ASP B 3 REMARK 465 ARG B 212 REMARK 465 ARG B 213 REMARK 465 VAL B 214 REMARK 465 GLU B 215 REMARK 465 GLU B 216 REMARK 465 SER B 217 REMARK 465 VAL B 218 REMARK 465 VAL B 219 REMARK 465 ASN B 220 REMARK 465 SER B 318 REMARK 465 ALA B 319 REMARK 465 GLU B 320 REMARK 465 LYS B 321 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N PHE B 124 O HOH B 1604 2.16 REMARK 500 OD1 ASP A 269 O HOH A 606 2.18 REMARK 500 O ALA A 69 N LEU A 73 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 18 CD GLU A 18 OE2 0.068 REMARK 500 GLU A 23 CD GLU A 23 OE2 0.076 REMARK 500 GLU A 27 CD GLU A 27 OE2 0.082 REMARK 500 GLU A 62 CD GLU A 62 OE2 0.075 REMARK 500 ASP A 96 CG ASP A 96 OD2 0.151 REMARK 500 GLU A 100 CD GLU A 100 OE2 0.128 REMARK 500 GLU A 140 CD GLU A 140 OE2 0.071 REMARK 500 GLU A 159 CD GLU A 159 OE2 0.071 REMARK 500 GLU A 245 CD GLU A 245 OE2 0.070 REMARK 500 GLU A 251 CD GLU A 251 OE2 0.079 REMARK 500 GLU A 256 CD GLU A 256 OE2 0.079 REMARK 500 GLU A 266 CD GLU A 266 OE2 0.077 REMARK 500 GLU A 284 CD GLU A 284 OE2 0.068 REMARK 500 GLU A 313 CD GLU A 313 OE2 0.071 REMARK 500 GLU B 23 CD GLU B 23 OE2 0.078 REMARK 500 GLU B 27 CD GLU B 27 OE2 0.073 REMARK 500 GLU B 62 CD GLU B 62 OE2 0.077 REMARK 500 GLU B 100 CD GLU B 100 OE2 0.094 REMARK 500 GLU B 140 CD GLU B 140 OE2 0.074 REMARK 500 GLU B 245 CD GLU B 245 OE2 0.067 REMARK 500 GLU B 251 CD GLU B 251 OE2 0.074 REMARK 500 GLU B 254 CD GLU B 254 OE2 0.095 REMARK 500 GLU B 256 CD GLU B 256 OE2 0.080 REMARK 500 GLU B 284 CD GLU B 284 OE2 0.067 REMARK 500 GLU B 313 CD GLU B 313 OE2 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 23 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 GLU A 23 N - CA - CB ANGL. DEV. = -11.1 DEGREES REMARK 500 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 45 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 45 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 49 N - CA - CB ANGL. DEV. = 13.6 DEGREES REMARK 500 PRO A 54 C - N - CD ANGL. DEV. = -20.1 DEGREES REMARK 500 LEU A 60 N - CA - CB ANGL. DEV. = 12.5 DEGREES REMARK 500 PRO A 61 C - N - CD ANGL. DEV. = -16.5 DEGREES REMARK 500 ASP A 77 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 77 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 PRO A 85 C - N - CD ANGL. DEV. = -37.3 DEGREES REMARK 500 ASP A 88 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 THR A 90 CA - CB - CG2 ANGL. DEV. = -9.5 DEGREES REMARK 500 ARG A 119 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASN A 175 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 ASP A 181 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 182 CB - CA - C ANGL. DEV. = 13.2 DEGREES REMARK 500 ASP A 197 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 LEU A 233 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG A 244 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 TYR A 261 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 264 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 269 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 269 CB - CG - OD2 ANGL. DEV. = -8.6 DEGREES REMARK 500 ASP A 293 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 303 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 303 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 PRO A 308 C - N - CD ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG A 317 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP B 49 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 49 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 VAL B 50 CB - CA - C ANGL. DEV. = 13.7 DEGREES REMARK 500 ASP B 77 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 PRO B 85 C - N - CD ANGL. DEV. = -25.6 DEGREES REMARK 500 TYR B 93 CB - CG - CD1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ASP B 96 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 96 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP B 105 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 105 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG B 118 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 118 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 121 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 PHE B 124 N - CA - CB ANGL. DEV. = 11.1 DEGREES REMARK 500 PRO B 143 C - N - CD ANGL. DEV. = -13.4 DEGREES REMARK 500 LEU B 149 CB - CA - C ANGL. DEV. = -14.8 DEGREES REMARK 500 ASP B 167 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 167 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASN B 175 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 ASP B 176 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 62 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 5 -85.45 -51.86 REMARK 500 VAL A 6 -49.14 -28.44 REMARK 500 LEU A 10 -72.12 -53.90 REMARK 500 ILE A 11 -39.48 -38.12 REMARK 500 PRO A 54 -97.30 32.55 REMARK 500 LYS A 56 -75.54 -94.14 REMARK 500 ALA A 69 -61.45 -29.39 REMARK 500 GLN A 75 -137.47 -53.54 REMARK 500 LEU A 76 -41.91 75.42 REMARK 500 ASP A 77 -154.56 85.12 REMARK 500 SER A 89 134.62 -179.28 REMARK 500 ASP A 96 -5.16 -57.51 REMARK 500 ARG A 97 28.22 -145.87 REMARK 500 ARG A 119 57.13 39.73 REMARK 500 PHE A 124 97.00 78.87 REMARK 500 ALA A 145 -125.84 148.23 REMARK 500 ALA A 146 -61.73 65.35 REMARK 500 ILE A 147 -79.75 -39.02 REMARK 500 ALA A 166 82.41 -25.06 REMARK 500 ASN A 175 41.29 -144.54 REMARK 500 ASP A 197 140.37 169.57 REMARK 500 MET A 209 -73.86 -90.22 REMARK 500 ALA A 259 -44.26 -28.27 REMARK 500 TYR A 261 -104.62 -88.11 REMARK 500 LEU A 262 -72.54 47.84 REMARK 500 LYS A 294 -9.42 -52.82 REMARK 500 ASP A 303 89.23 56.97 REMARK 500 MET A 310 46.43 -104.83 REMARK 500 VAL B 6 -70.30 -52.74 REMARK 500 ALA B 15 -16.61 -48.01 REMARK 500 GLU B 23 -71.41 -54.79 REMARK 500 PRO B 54 -64.92 -15.26 REMARK 500 ASP B 77 129.40 89.10 REMARK 500 ARG B 97 27.76 -142.92 REMARK 500 ARG B 121 133.24 -30.76 REMARK 500 TRP B 123 -75.55 -88.23 REMARK 500 PHE B 124 86.10 112.63 REMARK 500 ASN B 130 -161.74 -121.68 REMARK 500 PRO B 143 66.38 -41.53 REMARK 500 ALA B 144 110.51 -170.54 REMARK 500 ALA B 145 -79.58 167.67 REMARK 500 ALA B 146 -104.09 42.12 REMARK 500 LEU B 149 -69.95 -28.98 REMARK 500 ILE B 153 -76.96 -54.26 REMARK 500 ALA B 166 68.36 -104.23 REMARK 500 LYS B 194 -149.64 -121.54 REMARK 500 GLN B 255 -116.52 -76.59 REMARK 500 GLU B 256 -5.22 -38.15 REMARK 500 ALA B 259 -90.36 -35.29 REMARK 500 PRO B 260 -8.58 -46.42 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTN B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BIA RELATED DB: PDB REMARK 900 BIRA BIFUNCTIONAL PROTEIN (ACTS AS BIOTIN OPERON REPRESSOR AND REMARK 900 BIOTIN HOLOENZYME SYNTHETASE) (E.C.6.3.4.15) REMARK 900 RELATED ID: 1BIB RELATED DB: PDB REMARK 900 BIRA BIFUNCTIONAL PROTEIN (ACTS AS BIOTIN OPERON REPRESSOR AND REMARK 900 BIOTIN HOLOENZYME SYNTHETASE) (E.C. 6.3.4.15) COMPLEX WITH REMARK 900 BIOTINYLATED LYSINE DBREF 1HXD A 1 321 UNP P06709 BIRA_ECOLI 1 321 DBREF 1HXD B 1 321 UNP P06709 BIRA_ECOLI 1 321 SEQRES 1 A 321 MET LYS ASP ASN THR VAL PRO LEU LYS LEU ILE ALA LEU SEQRES 2 A 321 LEU ALA ASN GLY GLU PHE HIS SER GLY GLU GLN LEU GLY SEQRES 3 A 321 GLU THR LEU GLY MET SER ARG ALA ALA ILE ASN LYS HIS SEQRES 4 A 321 ILE GLN THR LEU ARG ASP TRP GLY VAL ASP VAL PHE THR SEQRES 5 A 321 VAL PRO GLY LYS GLY TYR SER LEU PRO GLU PRO ILE GLN SEQRES 6 A 321 LEU LEU ASN ALA LYS GLN ILE LEU GLY GLN LEU ASP GLY SEQRES 7 A 321 GLY SER VAL ALA VAL LEU PRO VAL ILE ASP SER THR ASN SEQRES 8 A 321 GLN TYR LEU LEU ASP ARG ILE GLY GLU LEU LYS SER GLY SEQRES 9 A 321 ASP ALA CYS ILE ALA GLU TYR GLN GLN ALA GLY ARG GLY SEQRES 10 A 321 ARG ARG GLY ARG LYS TRP PHE SER PRO PHE GLY ALA ASN SEQRES 11 A 321 LEU TYR LEU SER MET PHE TRP ARG LEU GLU GLN GLY PRO SEQRES 12 A 321 ALA ALA ALA ILE GLY LEU SER LEU VAL ILE GLY ILE VAL SEQRES 13 A 321 MET ALA GLU VAL LEU ARG LYS LEU GLY ALA ASP LYS VAL SEQRES 14 A 321 ARG VAL LYS TRP PRO ASN ASP LEU TYR LEU GLN ASP ARG SEQRES 15 A 321 LYS LEU ALA GLY ILE LEU VAL GLU LEU THR GLY LYS THR SEQRES 16 A 321 GLY ASP ALA ALA GLN ILE VAL ILE GLY ALA GLY ILE ASN SEQRES 17 A 321 MET ALA MET ARG ARG VAL GLU GLU SER VAL VAL ASN GLN SEQRES 18 A 321 GLY TRP ILE THR LEU GLN GLU ALA GLY ILE ASN LEU ASP SEQRES 19 A 321 ARG ASN THR LEU ALA ALA MET LEU ILE ARG GLU LEU ARG SEQRES 20 A 321 ALA ALA LEU GLU LEU PHE GLU GLN GLU GLY LEU ALA PRO SEQRES 21 A 321 TYR LEU SER ARG TRP GLU LYS LEU ASP ASN PHE ILE ASN SEQRES 22 A 321 ARG PRO VAL LYS LEU ILE ILE GLY ASP LYS GLU ILE PHE SEQRES 23 A 321 GLY ILE SER ARG GLY ILE ASP LYS GLN GLY ALA LEU LEU SEQRES 24 A 321 LEU GLU GLN ASP GLY ILE ILE LYS PRO TRP MET GLY GLY SEQRES 25 A 321 GLU ILE SER LEU ARG SER ALA GLU LYS SEQRES 1 B 321 MET LYS ASP ASN THR VAL PRO LEU LYS LEU ILE ALA LEU SEQRES 2 B 321 LEU ALA ASN GLY GLU PHE HIS SER GLY GLU GLN LEU GLY SEQRES 3 B 321 GLU THR LEU GLY MET SER ARG ALA ALA ILE ASN LYS HIS SEQRES 4 B 321 ILE GLN THR LEU ARG ASP TRP GLY VAL ASP VAL PHE THR SEQRES 5 B 321 VAL PRO GLY LYS GLY TYR SER LEU PRO GLU PRO ILE GLN SEQRES 6 B 321 LEU LEU ASN ALA LYS GLN ILE LEU GLY GLN LEU ASP GLY SEQRES 7 B 321 GLY SER VAL ALA VAL LEU PRO VAL ILE ASP SER THR ASN SEQRES 8 B 321 GLN TYR LEU LEU ASP ARG ILE GLY GLU LEU LYS SER GLY SEQRES 9 B 321 ASP ALA CYS ILE ALA GLU TYR GLN GLN ALA GLY ARG GLY SEQRES 10 B 321 ARG ARG GLY ARG LYS TRP PHE SER PRO PHE GLY ALA ASN SEQRES 11 B 321 LEU TYR LEU SER MET PHE TRP ARG LEU GLU GLN GLY PRO SEQRES 12 B 321 ALA ALA ALA ILE GLY LEU SER LEU VAL ILE GLY ILE VAL SEQRES 13 B 321 MET ALA GLU VAL LEU ARG LYS LEU GLY ALA ASP LYS VAL SEQRES 14 B 321 ARG VAL LYS TRP PRO ASN ASP LEU TYR LEU GLN ASP ARG SEQRES 15 B 321 LYS LEU ALA GLY ILE LEU VAL GLU LEU THR GLY LYS THR SEQRES 16 B 321 GLY ASP ALA ALA GLN ILE VAL ILE GLY ALA GLY ILE ASN SEQRES 17 B 321 MET ALA MET ARG ARG VAL GLU GLU SER VAL VAL ASN GLN SEQRES 18 B 321 GLY TRP ILE THR LEU GLN GLU ALA GLY ILE ASN LEU ASP SEQRES 19 B 321 ARG ASN THR LEU ALA ALA MET LEU ILE ARG GLU LEU ARG SEQRES 20 B 321 ALA ALA LEU GLU LEU PHE GLU GLN GLU GLY LEU ALA PRO SEQRES 21 B 321 TYR LEU SER ARG TRP GLU LYS LEU ASP ASN PHE ILE ASN SEQRES 22 B 321 ARG PRO VAL LYS LEU ILE ILE GLY ASP LYS GLU ILE PHE SEQRES 23 B 321 GLY ILE SER ARG GLY ILE ASP LYS GLN GLY ALA LEU LEU SEQRES 24 B 321 LEU GLU GLN ASP GLY ILE ILE LYS PRO TRP MET GLY GLY SEQRES 25 B 321 GLU ILE SER LEU ARG SER ALA GLU LYS HET BTN A 500 16 HET BTN B 501 16 HETNAM BTN BIOTIN FORMUL 3 BTN 2(C10 H16 N2 O3 S) FORMUL 5 HOH *59(H2 O) HELIX 1 1 ASN A 4 ALA A 15 1 12 HELIX 2 2 GLY A 22 LEU A 29 1 8 HELIX 3 3 SER A 32 ASP A 45 1 14 HELIX 4 4 ASN A 68 GLN A 75 1 8 HELIX 5 5 SER A 89 ASP A 96 1 8 HELIX 6 6 ALA A 146 GLY A 165 1 20 HELIX 7 7 LEU A 226 GLY A 230 5 5 HELIX 8 8 ASP A 234 GLY A 257 1 24 HELIX 9 9 LEU A 262 ASP A 269 1 8 HELIX 10 10 VAL B 6 ALA B 15 1 10 HELIX 11 11 GLY B 22 GLY B 30 1 9 HELIX 12 12 SER B 32 TRP B 46 1 15 HELIX 13 13 ASN B 68 GLN B 75 1 8 HELIX 14 14 SER B 89 ASP B 96 1 8 HELIX 15 15 ARG B 97 LEU B 101 5 5 HELIX 16 16 GLY B 117 ARG B 121 5 5 HELIX 17 17 ALA B 146 LEU B 164 1 19 HELIX 18 18 ASP B 234 GLN B 255 1 22 HELIX 19 19 LEU B 258 PRO B 260 5 3 HELIX 20 20 TYR B 261 ASP B 269 1 9 SHEET 1 A 3 HIS A 20 SER A 21 0 SHEET 2 A 3 GLY A 57 SER A 59 -1 N TYR A 58 O HIS A 20 SHEET 3 A 3 PHE A 51 VAL A 53 -1 N PHE A 51 O SER A 59 SHEET 1 B 7 VAL A 81 VAL A 83 0 SHEET 2 B 7 ALA A 106 ILE A 108 1 O ALA A 106 N ALA A 82 SHEET 3 B 7 LEU A 131 LEU A 139 -1 O SER A 134 N CYS A 107 SHEET 4 B 7 ALA A 199 ILE A 207 -1 O ALA A 199 N LEU A 139 SHEET 5 B 7 ARG A 182 THR A 192 -1 N GLY A 186 O GLY A 206 SHEET 6 B 7 ASP A 176 LEU A 179 -1 O LEU A 177 N LEU A 184 SHEET 7 B 7 ARG A 170 LYS A 172 -1 O ARG A 170 N TYR A 178 SHEET 1 C 5 ILE A 306 TRP A 309 0 SHEET 2 C 5 ALA A 297 GLU A 301 -1 N LEU A 298 O TRP A 309 SHEET 3 C 5 LYS A 283 ASP A 293 -1 O ILE A 288 N GLU A 301 SHEET 4 C 5 PRO A 275 ILE A 280 -1 N VAL A 276 O GLY A 287 SHEET 5 C 5 GLU A 313 LEU A 316 -1 O GLU A 313 N ILE A 279 SHEET 1 D 3 HIS B 20 SER B 21 0 SHEET 2 D 3 GLY B 57 SER B 59 -1 O TYR B 58 N HIS B 20 SHEET 3 D 3 PHE B 51 VAL B 53 -1 N PHE B 51 O SER B 59 SHEET 1 E 7 VAL B 81 ILE B 87 0 SHEET 2 E 7 ALA B 106 GLN B 112 1 O ALA B 106 N ALA B 82 SHEET 3 E 7 LEU B 131 LEU B 139 -1 O TYR B 132 N ALA B 109 SHEET 4 E 7 ALA B 199 ILE B 207 -1 O ALA B 199 N LEU B 139 SHEET 5 E 7 ARG B 182 THR B 192 -1 O GLY B 186 N GLY B 206 SHEET 6 E 7 ASP B 176 LEU B 179 -1 O LEU B 177 N LEU B 184 SHEET 7 E 7 ARG B 170 LYS B 172 -1 N ARG B 170 O TYR B 178 SHEET 1 F 5 ILE B 305 TRP B 309 0 SHEET 2 F 5 LEU B 298 GLN B 302 -1 N LEU B 298 O TRP B 309 SHEET 3 F 5 LYS B 283 ILE B 292 -1 O ILE B 288 N GLU B 301 SHEET 4 F 5 PRO B 275 ILE B 280 -1 N VAL B 276 O GLY B 287 SHEET 5 F 5 SER B 315 LEU B 316 -1 O SER B 315 N LYS B 277 CISPEP 1 TRP A 173 PRO A 174 0 6.58 CISPEP 2 TRP B 173 PRO B 174 0 1.86 SITE 1 AC1 17 SER A 89 THR A 90 ASN A 91 GLN A 112 SITE 2 AC1 17 ARG A 116 GLY A 117 ARG A 118 TRP A 123 SITE 3 AC1 17 LEU A 133 SER A 134 LYS A 183 GLY A 186 SITE 4 AC1 17 ILE A 187 LEU A 188 GLY A 204 ALA A 205 SITE 5 AC1 17 GLY A 206 SITE 1 AC2 16 SER B 89 THR B 90 GLN B 112 GLY B 115 SITE 2 AC2 16 ARG B 116 GLY B 117 ARG B 118 ARG B 121 SITE 3 AC2 16 TRP B 123 TYR B 132 LYS B 183 GLY B 186 SITE 4 AC2 16 ILE B 187 LEU B 188 ALA B 205 GLY B 206 CRYST1 104.900 108.900 143.200 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009533 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009183 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006983 0.00000