PDB Short entry for 1IEB HEADER HISTOCOMPATIBILITY ANTIGEN 05-APR-96 1IEB TITLE HISTOCOMPATIBILITY ANTIGEN CAVEAT 1IEB NAG A 194 HAS WRONG CHIRALITY AT ATOM C1 NAG C 194 HAS WRONG CAVEAT 2 1IEB CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS II I-EK; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: WITH COVALENTLY BOUND HSP70 PEPTIDE; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MHC CLASS II I-EK; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: WITH COVALENTLY BOUND HSP70 PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 13 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS HISTOCOMPATIBILITY ANTIGEN EXPDTA X-RAY DIFFRACTION AUTHOR D.H.FREMONT,W.A.HENDRICKSON,P.MARRACK,J.KAPPLER REVDAT 5 09-AUG-23 1IEB 1 HETSYN REVDAT 4 29-JUL-20 1IEB 1 CAVEAT COMPND REMARK HET REVDAT 4 2 1 HETNAM FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 13-JUL-11 1IEB 1 VERSN REVDAT 2 24-FEB-09 1IEB 1 VERSN REVDAT 1 05-JUN-97 1IEB 0 JRNL AUTH D.H.FREMONT,W.A.HENDRICKSON,P.MARRACK,J.KAPPLER JRNL TITL STRUCTURES OF AN MHC CLASS II MOLECULE WITH COVALENTLY BOUND JRNL TITL 2 SINGLE PEPTIDES. JRNL REF SCIENCE V. 272 1001 1996 JRNL REFN ISSN 0036-8075 JRNL PMID 8638119 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0100 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.6 REMARK 3 NUMBER OF REFLECTIONS : 23940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.321 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1221 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.85 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2754 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6424 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 159 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.730 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.490 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.850 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.170 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.660 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.680 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : RESTRAINED REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM3_MOD.CHO REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH3.CHO REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IEB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, AGROVATA, HKL REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (AGROVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29069 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 2.950 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1IEA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 4000, 2% EG, 200MM A.S, 100MM REMARK 280 CITRATE PH 5.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.49333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 212.98667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 212.98667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 106.49333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE ARE TWO HETERODIMERS IN THE ASYMMETRIC UNIT RELATED REMARK 300 BY AN APPROXIMATE TWO-FOLD AXIS. REMARK 300 REMARK 300 MOLECULE 1 : ALPHA CHAIN - RESIDUES A 1 THROUGH A 182 REMARK 300 : BETA CHAIN - RESIDUES B 4N THROUGH B 188 REMARK 300 : SUGARS - RESIDUES A 1, A 2, B 3 REMARK 300 REMARK 300 MOLECULE 2 : ALPHA CHAIN - RESIDUES C 1 THROUGH A 182 REMARK 300 : BETA CHAIN - RESIDUES D 4N THROUGH B 188 REMARK 300 : SUGARS - RESIDUES C 4, C 5, D 6 REMARK 300 REMARK 300 WATERS : 1 THROUGH 159 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THIS ENTRY CONTAINS COORDINATES FOR THE EXTRACELLULAR REMARK 400 DOMAINS OF THE MURINE MHC CLASS II MOLECULE I-EK WITH A REMARK 400 PEPTIDE FROM MURINE HSP70 (236 - 248) COVALENTLY ATTACHED REMARK 400 TO THE I-EK BETA CHAIN VIA A POLYPEPTIDE LINKER. NO REMARK 400 ATTEMPT WAS MADE TO MODEL THREE RESIDUES AMINO TERMINAL TO REMARK 400 THE PEPTIDE OR TEN RESIDUES CARBOXY TERMINAL TO EITHER THE REMARK 400 ALPHA OR BETA CHAINS. DENSITY FOR RESIDUES B 107 - B 113 REMARK 400 AND D 107 - D 113 WAS EXTREMELY WEAK. THESE RESIDUES ARE REMARK 400 MODELLED AS ALANINE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 183 REMARK 465 THR A 184 REMARK 465 LEU A 185 REMARK 465 LEU A 186 REMARK 465 PRO A 187 REMARK 465 GLU A 188 REMARK 465 THR A 189 REMARK 465 LYS A 190 REMARK 465 GLU A 191 REMARK 465 ASN A 192 REMARK 465 ARG B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 LYS B 189 REMARK 465 ALA B 190 REMARK 465 GLN B 191 REMARK 465 SER B 192 REMARK 465 THR B 193 REMARK 465 SER B 194 REMARK 465 ALA B 195 REMARK 465 GLN B 196 REMARK 465 ASN B 197 REMARK 465 LYS B 198 REMARK 465 LYS C 183 REMARK 465 THR C 184 REMARK 465 LEU C 185 REMARK 465 LEU C 186 REMARK 465 PRO C 187 REMARK 465 GLU C 188 REMARK 465 THR C 189 REMARK 465 LYS C 190 REMARK 465 GLU C 191 REMARK 465 ASN C 192 REMARK 465 ARG D 1 REMARK 465 ASP D 2 REMARK 465 SER D 3 REMARK 465 LYS D 189 REMARK 465 ALA D 190 REMARK 465 GLN D 191 REMARK 465 SER D 192 REMARK 465 THR D 193 REMARK 465 SER D 194 REMARK 465 ALA D 195 REMARK 465 GLN D 196 REMARK 465 ASN D 197 REMARK 465 LYS D 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 ARG B 4N CG CD NE CZ NH1 NH2 REMARK 470 GLN B 107 CG CD OE1 NE2 REMARK 470 PRO B 108 CG CD REMARK 470 LEU B 109 CG CD1 CD2 REMARK 470 GLU B 110 CG CD OE1 OE2 REMARK 470 HIS B 111 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 112 CG ND1 CD2 CE1 NE2 REMARK 470 ASN B 113 CG OD1 ND2 REMARK 470 GLU C 181 CG CD OE1 OE2 REMARK 470 GLU C 182 CG CD OE1 OE2 REMARK 470 ARG D 4N CG CD NE CZ NH1 NH2 REMARK 470 GLN D 107 CG CD OE1 NE2 REMARK 470 PRO D 108 CG CD REMARK 470 LEU D 109 CG CD1 CD2 REMARK 470 GLU D 110 CG CD OE1 OE2 REMARK 470 HIS D 111 CG ND1 CD2 CE1 NE2 REMARK 470 HIS D 112 CG ND1 CD2 CE1 NE2 REMARK 470 ASN D 113 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 17 -14.26 -40.62 REMARK 500 GLU A 21 136.45 -178.50 REMARK 500 ASP A 27 29.08 47.90 REMARK 500 GLU A 37 -73.50 -81.02 REMARK 500 LEU A 60 -36.86 -39.67 REMARK 500 ASP A 82 174.21 -57.80 REMARK 500 THR A 90 116.59 -164.31 REMARK 500 SER A 113 142.61 178.23 REMARK 500 ASP A 142 -134.93 -76.28 REMARK 500 PRO A 155 96.98 -49.81 REMARK 500 TRP A 168 0.55 -51.20 REMARK 500 GLU A 179 133.27 -174.61 REMARK 500 ASP B 5N -151.70 -121.80 REMARK 500 LYS B 2L -56.56 -15.31 REMARK 500 ASN B 19 85.02 -152.21 REMARK 500 TYR B 32 122.89 -174.15 REMARK 500 ASN B 33 -137.04 44.17 REMARK 500 ASP B 76 -64.86 -98.99 REMARK 500 VAL B 78 -63.38 -124.01 REMARK 500 GLU B 84 -51.30 -29.75 REMARK 500 TYR B 102 151.51 178.53 REMARK 500 THR B 106 -84.99 -94.88 REMARK 500 GLN B 107 -35.81 -178.33 REMARK 500 PRO B 108 -105.88 -130.55 REMARK 500 LEU B 109 -52.50 71.76 REMARK 500 GLU B 110 -47.87 79.41 REMARK 500 HIS B 112 116.45 89.07 REMARK 500 ASN B 134 -30.99 69.99 REMARK 500 GLU B 138 83.73 -61.11 REMARK 500 LYS B 139 31.74 -76.33 REMARK 500 PRO B 178 14.81 -65.39 REMARK 500 ARG C 76 -33.54 -39.28 REMARK 500 ASP C 82 -179.53 -57.95 REMARK 500 PRO C 96 134.60 -38.02 REMARK 500 SER C 113 146.37 179.84 REMARK 500 PRO C 115 68.78 -63.48 REMARK 500 VAL C 136 -158.02 -71.64 REMARK 500 ASP C 142 -136.72 -82.51 REMARK 500 PRO C 155 78.71 -44.32 REMARK 500 TRP C 168 -5.41 -46.01 REMARK 500 ASP D 5N -153.71 -114.66 REMARK 500 GLN D 22 -77.67 -55.93 REMARK 500 ASN D 33 -119.39 46.02 REMARK 500 VAL D 78 -65.20 -133.40 REMARK 500 PHE D 89 -43.95 -141.68 REMARK 500 TYR D 102 152.61 175.62 REMARK 500 THR D 106 -75.49 -89.79 REMARK 500 GLN D 107 -41.02 174.40 REMARK 500 PRO D 108 -106.68 -126.33 REMARK 500 LEU D 109 -42.15 71.50 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 10 0.07 SIDE CHAIN REMARK 500 TYR B 32 0.07 SIDE CHAIN REMARK 500 TYR B 123 0.07 SIDE CHAIN REMARK 500 TYR C 150 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1IEB A 1 192 UNP P01904 HA21_MOUSE 26 217 DBREF 1IEB B 1 198 UNP Q31164 Q31164_MOUSE 1 198 DBREF 1IEB C 1 192 UNP P01904 HA21_MOUSE 26 217 DBREF 1IEB D 1 198 UNP Q31164 Q31164_MOUSE 1 198 SEQRES 1 A 192 ILE LYS GLU GLU HIS THR ILE ILE GLN ALA GLU PHE TYR SEQRES 2 A 192 LEU LEU PRO ASP LYS ARG GLY GLU PHE MET PHE ASP PHE SEQRES 3 A 192 ASP GLY ASP GLU ILE PHE HIS VAL ASP ILE GLU LYS SER SEQRES 4 A 192 GLU THR ILE TRP ARG LEU GLU GLU PHE ALA LYS PHE ALA SEQRES 5 A 192 SER PHE GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA VAL SEQRES 6 A 192 ASP LYS ALA ASN LEU ASP VAL MET LYS GLU ARG SER ASN SEQRES 7 A 192 ASN THR PRO ASP ALA ASN VAL ALA PRO GLU VAL THR VAL SEQRES 8 A 192 LEU SER ARG SER PRO VAL ASN LEU GLY GLU PRO ASN ILE SEQRES 9 A 192 LEU ILE CYS PHE ILE ASP LYS PHE SER PRO PRO VAL VAL SEQRES 10 A 192 ASN VAL THR TRP LEU ARG ASN GLY ARG PRO VAL THR GLU SEQRES 11 A 192 GLY VAL SER GLU THR VAL PHE LEU PRO ARG ASP ASP HIS SEQRES 12 A 192 LEU PHE ARG LYS PHE HIS TYR LEU THR PHE LEU PRO SER SEQRES 13 A 192 THR ASP ASP PHE TYR ASP CYS GLU VAL ASP HIS TRP GLY SEQRES 14 A 192 LEU GLU GLU PRO LEU ARG LYS THR TRP GLU PHE GLU GLU SEQRES 15 A 192 LYS THR LEU LEU PRO GLU THR LYS GLU ASN SEQRES 1 B 227 ARG ASP SER ARG ASP ARG MET VAL ASN HIS PHE ILE ALA SEQRES 2 B 227 GLU PHE LYS ARG LYS GLY GLY SER LEU VAL PRO ARG GLY SEQRES 3 B 227 SER GLY GLY GLY GLY SER ARG PRO TRP PHE LEU GLU TYR SEQRES 4 B 227 CYS LYS SER GLU CYS HIS PHE TYR ASN GLY THR GLN ARG SEQRES 5 B 227 VAL ARG LEU LEU VAL ARG TYR PHE TYR ASN LEU GLU GLU SEQRES 6 B 227 ASN LEU ARG PHE ASP SER ASP VAL GLY GLU PHE ARG ALA SEQRES 7 B 227 VAL THR GLU LEU GLY ARG PRO ASP ALA GLU ASN TRP ASN SEQRES 8 B 227 SER GLN PRO GLU PHE LEU GLU GLN LYS ARG ALA GLU VAL SEQRES 9 B 227 ASP THR VAL CYS ARG HIS ASN TYR GLU ILE PHE ASP ASN SEQRES 10 B 227 PHE LEU VAL PRO ARG ARG VAL GLU PRO THR VAL THR VAL SEQRES 11 B 227 TYR PRO THR LYS THR GLN PRO LEU GLU HIS HIS ASN LEU SEQRES 12 B 227 LEU VAL CYS SER VAL SER ASP PHE TYR PRO GLY ASN ILE SEQRES 13 B 227 GLU VAL ARG TRP PHE ARG ASN GLY LYS GLU GLU LYS THR SEQRES 14 B 227 GLY ILE VAL SER THR GLY LEU VAL ARG ASN GLY ASP TRP SEQRES 15 B 227 THR PHE GLN THR LEU VAL MET LEU GLU THR VAL PRO GLN SEQRES 16 B 227 SER GLY GLU VAL TYR THR CYS GLN VAL GLU HIS PRO SER SEQRES 17 B 227 LEU THR ASP PRO VAL THR VAL GLU TRP LYS ALA GLN SER SEQRES 18 B 227 THR SER ALA GLN ASN LYS SEQRES 1 C 192 ILE LYS GLU GLU HIS THR ILE ILE GLN ALA GLU PHE TYR SEQRES 2 C 192 LEU LEU PRO ASP LYS ARG GLY GLU PHE MET PHE ASP PHE SEQRES 3 C 192 ASP GLY ASP GLU ILE PHE HIS VAL ASP ILE GLU LYS SER SEQRES 4 C 192 GLU THR ILE TRP ARG LEU GLU GLU PHE ALA LYS PHE ALA SEQRES 5 C 192 SER PHE GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA VAL SEQRES 6 C 192 ASP LYS ALA ASN LEU ASP VAL MET LYS GLU ARG SER ASN SEQRES 7 C 192 ASN THR PRO ASP ALA ASN VAL ALA PRO GLU VAL THR VAL SEQRES 8 C 192 LEU SER ARG SER PRO VAL ASN LEU GLY GLU PRO ASN ILE SEQRES 9 C 192 LEU ILE CYS PHE ILE ASP LYS PHE SER PRO PRO VAL VAL SEQRES 10 C 192 ASN VAL THR TRP LEU ARG ASN GLY ARG PRO VAL THR GLU SEQRES 11 C 192 GLY VAL SER GLU THR VAL PHE LEU PRO ARG ASP ASP HIS SEQRES 12 C 192 LEU PHE ARG LYS PHE HIS TYR LEU THR PHE LEU PRO SER SEQRES 13 C 192 THR ASP ASP PHE TYR ASP CYS GLU VAL ASP HIS TRP GLY SEQRES 14 C 192 LEU GLU GLU PRO LEU ARG LYS THR TRP GLU PHE GLU GLU SEQRES 15 C 192 LYS THR LEU LEU PRO GLU THR LYS GLU ASN SEQRES 1 D 227 ARG ASP SER ARG ASP ARG MET VAL ASN HIS PHE ILE ALA SEQRES 2 D 227 GLU PHE LYS ARG LYS GLY GLY SER LEU VAL PRO ARG GLY SEQRES 3 D 227 SER GLY GLY GLY GLY SER ARG PRO TRP PHE LEU GLU TYR SEQRES 4 D 227 CYS LYS SER GLU CYS HIS PHE TYR ASN GLY THR GLN ARG SEQRES 5 D 227 VAL ARG LEU LEU VAL ARG TYR PHE TYR ASN LEU GLU GLU SEQRES 6 D 227 ASN LEU ARG PHE ASP SER ASP VAL GLY GLU PHE ARG ALA SEQRES 7 D 227 VAL THR GLU LEU GLY ARG PRO ASP ALA GLU ASN TRP ASN SEQRES 8 D 227 SER GLN PRO GLU PHE LEU GLU GLN LYS ARG ALA GLU VAL SEQRES 9 D 227 ASP THR VAL CYS ARG HIS ASN TYR GLU ILE PHE ASP ASN SEQRES 10 D 227 PHE LEU VAL PRO ARG ARG VAL GLU PRO THR VAL THR VAL SEQRES 11 D 227 TYR PRO THR LYS THR GLN PRO LEU GLU HIS HIS ASN LEU SEQRES 12 D 227 LEU VAL CYS SER VAL SER ASP PHE TYR PRO GLY ASN ILE SEQRES 13 D 227 GLU VAL ARG TRP PHE ARG ASN GLY LYS GLU GLU LYS THR SEQRES 14 D 227 GLY ILE VAL SER THR GLY LEU VAL ARG ASN GLY ASP TRP SEQRES 15 D 227 THR PHE GLN THR LEU VAL MET LEU GLU THR VAL PRO GLN SEQRES 16 D 227 SER GLY GLU VAL TYR THR CYS GLN VAL GLU HIS PRO SER SEQRES 17 D 227 LEU THR ASP PRO VAL THR VAL GLU TRP LYS ALA GLN SER SEQRES 18 D 227 THR SER ALA GLN ASN LYS MODRES 1IEB ASN A 78 ASN GLYCOSYLATION SITE MODRES 1IEB ASN A 118 ASN GLYCOSYLATION SITE MODRES 1IEB ASN B 19 ASN GLYCOSYLATION SITE MODRES 1IEB ASN C 78 ASN GLYCOSYLATION SITE MODRES 1IEB ASN C 118 ASN GLYCOSYLATION SITE MODRES 1IEB ASN D 19 ASN GLYCOSYLATION SITE HET NAG A 193 14 HET NAG A 194 14 HET NAG B 199 14 HET NAG C 193 14 HET NAG C 194 14 HET NAG D 199 14 HET SO4 D 200 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 6(C8 H15 N O6) FORMUL 11 SO4 O4 S 2- FORMUL 12 HOH *159(H2 O) HELIX 1 1 GLU A 46 LYS A 50 5 5 HELIX 2 2 GLN A 57 ARG A 76 1 20 HELIX 3 3 GLU B 52 SER B 63 1 12 HELIX 4 4 PRO B 65 THR B 77 1 13 HELIX 5 5 CYS B 79 ASN B 88 1 10 HELIX 6 6 GLU C 46 LYS C 50 5 5 HELIX 7 7 GLN C 57 ARG C 76 1 20 HELIX 8 8 GLU D 52 SER D 63 1 12 HELIX 9 9 PRO D 65 THR D 77 1 13 HELIX 10 10 CYS D 79 ASN D 88 1 10 SHEET 1 A 8 GLU A 40 TRP A 43 0 SHEET 2 A 8 ASP A 29 ASP A 35 -1 N ASP A 35 O GLU A 40 SHEET 3 A 8 ARG A 19 PHE A 26 -1 N PHE A 26 O ASP A 29 SHEET 4 A 8 HIS A 5 LEU A 15 -1 N LEU A 14 O ARG A 19 SHEET 5 A 8 PHE B 7 PHE B 17 -1 N PHE B 17 O HIS A 5 SHEET 6 A 8 VAL B 24 TYR B 30 -1 N ARG B 29 O LYS B 12 SHEET 7 A 8 LEU B 38 ASP B 41 -1 N PHE B 40 O VAL B 28 SHEET 8 A 8 PHE B 47 ALA B 49 -1 N ARG B 48 O ARG B 39 SHEET 1 B 4 VAL A 91 SER A 93 0 SHEET 2 B 4 ASN A 103 ILE A 109 -1 N ILE A 106 O LEU A 92 SHEET 3 B 4 LYS A 147 PHE A 153 -1 N PHE A 153 O ASN A 103 SHEET 4 B 4 VAL A 132 GLU A 134 -1 N SER A 133 O TYR A 150 SHEET 1 C 3 ASN A 118 ARG A 123 0 SHEET 2 C 3 TYR A 161 ASP A 166 -1 N ASP A 166 O ASN A 118 SHEET 3 C 3 LEU A 174 TRP A 178 -1 N TRP A 178 O TYR A 161 SHEET 1 D 4 THR B 98 TYR B 102 0 SHEET 2 D 4 LEU B 115 PHE B 122 -1 N SER B 120 O THR B 98 SHEET 3 D 4 PHE B 155 LEU B 161 -1 N LEU B 161 O LEU B 115 SHEET 4 D 4 ILE B 142 SER B 144 -1 N VAL B 143 O MET B 160 SHEET 1 E 3 ILE B 127 ARG B 133 0 SHEET 2 E 3 TYR B 171 HIS B 177 -1 N GLU B 176 O GLU B 128 SHEET 3 E 3 VAL B 184 TRP B 188 -1 N TRP B 188 O TYR B 171 SHEET 1 F 8 GLU C 40 TRP C 43 0 SHEET 2 F 8 ASP C 29 ASP C 35 -1 N ASP C 35 O GLU C 40 SHEET 3 F 8 ARG C 19 PHE C 26 -1 N PHE C 26 O ASP C 29 SHEET 4 F 8 HIS C 5 LEU C 15 -1 N LEU C 14 O ARG C 19 SHEET 5 F 8 PHE D 7 PHE D 17 -1 N PHE D 17 O HIS C 5 SHEET 6 F 8 VAL D 24 TYR D 32 -1 N PHE D 31 O TYR D 10 SHEET 7 F 8 GLU D 35 ASP D 41 -1 N PHE D 40 O VAL D 28 SHEET 8 F 8 PHE D 47 ALA D 49 -1 N ARG D 48 O ARG D 39 SHEET 1 G 4 GLU C 88 SER C 93 0 SHEET 2 G 4 PRO C 102 ASP C 110 -1 N ASP C 110 O GLU C 88 SHEET 3 G 4 LYS C 147 LEU C 154 -1 N PHE C 153 O ASN C 103 SHEET 4 G 4 VAL C 132 GLU C 134 -1 N SER C 133 O TYR C 150 SHEET 1 H 3 VAL C 117 ARG C 123 0 SHEET 2 H 3 TYR C 161 HIS C 167 -1 N ASP C 166 O ASN C 118 SHEET 3 H 3 LEU C 174 TRP C 178 -1 N TRP C 178 O TYR C 161 SHEET 1 I 2 THR D 98 PRO D 103 0 SHEET 2 I 2 LEU D 115 SER D 120 -1 N SER D 120 O THR D 98 SHEET 1 J 3 ILE D 127 ARG D 133 0 SHEET 2 J 3 TYR D 171 HIS D 177 -1 N GLU D 176 O GLU D 128 SHEET 3 J 3 VAL D 184 TRP D 188 -1 N TRP D 188 O TYR D 171 SHEET 1 K 2 ILE D 142 SER D 144 0 SHEET 2 K 2 VAL D 159 LEU D 161 -1 N MET D 160 O VAL D 143 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.03 SSBOND 2 CYS B 15 CYS B 79 1555 1555 2.05 SSBOND 3 CYS B 117 CYS B 173 1555 1555 2.02 SSBOND 4 CYS C 107 CYS C 163 1555 1555 2.03 SSBOND 5 CYS D 15 CYS D 79 1555 1555 2.05 SSBOND 6 CYS D 117 CYS D 173 1555 1555 2.02 LINK ND2 ASN A 78 C1 NAG A 193 1555 1555 1.45 LINK ND2 ASN A 118 C1 NAG A 194 1555 1555 1.47 LINK ND2 ASN B 19 C1 NAG B 199 1555 1555 1.44 LINK ND2 ASN C 78 C1 NAG C 193 1555 1555 1.45 LINK ND2 ASN C 118 C1 NAG C 194 1555 1555 1.47 LINK ND2 ASN D 19 C1 NAG D 199 1555 1555 1.45 CISPEP 1 LEU A 15 PRO A 16 0 0.09 CISPEP 2 SER A 113 PRO A 114 0 0.33 CISPEP 3 TYR B 123 PRO B 124 0 0.85 CISPEP 4 LEU C 15 PRO C 16 0 0.30 CISPEP 5 SER C 113 PRO C 114 0 0.56 CISPEP 6 TYR D 123 PRO D 124 0 1.21 CRYST1 77.530 77.530 319.480 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012898 0.007447 0.000000 0.00000 SCALE2 0.000000 0.014894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003130 0.00000