PDB Short entry for 1IML HEADER METAL BINDING PROTEIN 23-DEC-95 1IML TITLE CYSTEINE RICH INTESTINAL PROTEIN, NMR, 48 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE RICH INTESTINAL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CRIP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS RATTUS; SOURCE 3 ORGANISM_COMMON: BLACK RAT; SOURCE 4 ORGANISM_TAXID: 10117; SOURCE 5 ORGAN: SMALL INTESTINE; SOURCE 6 TISSUE: SMOOTH MUSCLE; SOURCE 7 CELL: SMOOTH MUSCLE CELLS; SOURCE 8 GENE: CRIP; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET-3A NOVAGEN; SOURCE 13 EXPRESSION_SYSTEM_GENE: CRIP KEYWDS METAL-BINDING PROTEIN, LIM DOMAIN PROTEIN, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 48 AUTHOR G.C.PEREZ-ALVARADO,J.L.KOSA,H.A.LOUIS,M.C.BECKERLE,D.R.WINGE, AUTHOR 2 M.F.SUMMERS REVDAT 3 29-NOV-17 1IML 1 KEYWDS REMARK HELIX REVDAT 2 24-FEB-09 1IML 1 VERSN REVDAT 1 11-JUL-96 1IML 0 JRNL AUTH G.C.PEREZ-ALVARADO,J.L.KOSA,H.A.LOUIS,M.C.BECKERLE, JRNL AUTH 2 D.R.WINGE,M.F.SUMMERS JRNL TITL STRUCTURE OF THE CYSTEINE-RICH INTESTINAL PROTEIN, CRIP. JRNL REF J.MOL.BIOL. V. 257 153 1996 JRNL REFN ISSN 0022-2836 JRNL PMID 8632452 JRNL DOI 10.1006/JMBI.1996.0153 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.C.PEREZ-ALVARADO REMARK 1 REF NMR STUDIES OF LIM DOMAIN 1995 REMARK 1 REF 2 PROTEINS REMARK 1 PUBL BALTIMORE : UNIVERSITY OF MARYLAND, BALTIMORE COUNTY REMARK 1 PUBL 2 (THESIS) REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH G.C.PEREZ-ALVARADO,C.MILES,J.W.MICHELSEN,H.A.LOUIS, REMARK 1 AUTH 2 D.R.WINGE,M.C.BECKERLE,M.F.SUMMERS REMARK 1 TITL STRUCTURE OF THE CARBOXY-TERMINAL LIM DOMAIN FROM THE REMARK 1 TITL 2 CYSTEINE RICH PROTEIN CRP REMARK 1 REF NAT.STRUCT.BIOL. V. 1 388 1994 REMARK 1 REFN ISSN 1072-8368 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DSPACE REMARK 3 AUTHORS : HARE RESEARCH INC. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1IML COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174197. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 48 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 40 PHE A 12 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 5 -73.06 -77.83 REMARK 500 1 ASP A 7 57.22 72.61 REMARK 500 1 LYS A 8 -168.78 -117.23 REMARK 500 1 SER A 18 131.83 -174.83 REMARK 500 1 LEU A 28 83.13 -62.77 REMARK 500 1 SER A 39 91.96 -61.13 REMARK 500 1 HIS A 42 -168.96 -110.86 REMARK 500 1 GLU A 46 92.84 -60.31 REMARK 500 1 LYS A 48 104.81 -177.97 REMARK 500 1 PHE A 65 -77.14 -66.81 REMARK 500 1 GLU A 71 -49.93 -165.51 REMARK 500 1 THR A 74 -166.50 -164.26 REMARK 500 1 PHE A 75 84.87 -67.80 REMARK 500 2 ASP A 7 53.33 72.29 REMARK 500 2 LYS A 8 -168.78 -111.70 REMARK 500 2 GLU A 14 44.75 -102.31 REMARK 500 2 SER A 18 132.09 -178.19 REMARK 500 2 LEU A 28 89.72 -60.02 REMARK 500 2 GLU A 31 36.95 -96.72 REMARK 500 2 LYS A 32 -44.38 -132.84 REMARK 500 2 HIS A 42 -168.91 -103.87 REMARK 500 2 GLU A 46 76.37 -61.72 REMARK 500 2 PHE A 60 30.14 -154.19 REMARK 500 2 PRO A 62 106.76 -51.86 REMARK 500 2 PHE A 65 109.69 -165.39 REMARK 500 2 SER A 72 -164.24 -106.17 REMARK 500 2 THR A 74 91.16 58.33 REMARK 500 3 LYS A 5 -74.36 -75.43 REMARK 500 3 ASP A 7 51.92 72.72 REMARK 500 3 LYS A 8 -169.01 -108.52 REMARK 500 3 GLU A 14 44.55 -101.22 REMARK 500 3 SER A 18 133.87 -170.13 REMARK 500 3 LEU A 19 18.34 59.87 REMARK 500 3 LEU A 28 84.41 -65.05 REMARK 500 3 GLU A 31 34.22 -95.80 REMARK 500 3 LYS A 32 -56.20 -131.97 REMARK 500 3 HIS A 42 -168.60 -114.14 REMARK 500 3 GLU A 46 92.21 -60.79 REMARK 500 3 LYS A 48 102.98 176.28 REMARK 500 3 PRO A 62 -82.33 -52.95 REMARK 500 3 LYS A 63 -77.35 -151.60 REMARK 500 3 ALA A 70 103.24 61.72 REMARK 500 3 SER A 72 -62.70 -100.93 REMARK 500 3 PHE A 75 -79.09 68.20 REMARK 500 4 LYS A 5 -74.09 -78.19 REMARK 500 4 ASP A 7 58.58 72.43 REMARK 500 4 LYS A 8 -168.56 -118.15 REMARK 500 4 SER A 18 133.35 -177.46 REMARK 500 4 LEU A 28 77.42 -66.16 REMARK 500 4 GLU A 31 38.59 -96.88 REMARK 500 REMARK 500 THIS ENTRY HAS 722 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 PHE A 12 -11.75 REMARK 500 1 TRP A 23 -11.55 REMARK 500 1 CYS A 30 -12.40 REMARK 500 1 TYR A 50 -10.98 REMARK 500 1 CYS A 51 -12.69 REMARK 500 1 HIS A 53 -10.87 REMARK 500 2 PHE A 12 -12.34 REMARK 500 2 TRP A 23 -12.61 REMARK 500 2 CYS A 30 -11.37 REMARK 500 2 TYR A 50 -13.56 REMARK 500 2 CYS A 51 -12.69 REMARK 500 2 HIS A 53 -11.85 REMARK 500 3 PHE A 12 -12.91 REMARK 500 3 ASP A 22 -10.70 REMARK 500 3 CYS A 30 -13.63 REMARK 500 3 TYR A 50 -13.66 REMARK 500 3 CYS A 51 -11.30 REMARK 500 3 ASN A 52 -10.13 REMARK 500 3 HIS A 53 -10.31 REMARK 500 4 PHE A 12 -11.74 REMARK 500 4 TRP A 23 -11.77 REMARK 500 4 CYS A 30 -10.76 REMARK 500 4 TYR A 50 -10.04 REMARK 500 4 CYS A 51 -13.16 REMARK 500 4 HIS A 53 -10.68 REMARK 500 5 PHE A 12 -12.08 REMARK 500 5 ASP A 22 -10.44 REMARK 500 5 TRP A 23 -12.66 REMARK 500 5 CYS A 30 -11.40 REMARK 500 5 TYR A 50 -12.53 REMARK 500 5 CYS A 51 -12.22 REMARK 500 5 HIS A 53 -11.39 REMARK 500 6 ASP A 22 -10.38 REMARK 500 6 TRP A 23 -10.27 REMARK 500 6 CYS A 30 -11.49 REMARK 500 6 LYS A 32 -10.07 REMARK 500 6 TYR A 50 -13.52 REMARK 500 6 CYS A 51 -12.64 REMARK 500 6 HIS A 53 -10.88 REMARK 500 7 PHE A 12 -11.64 REMARK 500 7 TRP A 23 -11.47 REMARK 500 7 CYS A 30 -11.24 REMARK 500 7 GLY A 41 -10.07 REMARK 500 7 TYR A 50 -13.97 REMARK 500 7 CYS A 51 -11.23 REMARK 500 7 HIS A 53 -10.57 REMARK 500 8 PHE A 12 -11.90 REMARK 500 8 TRP A 23 -11.46 REMARK 500 8 CYS A 30 -11.53 REMARK 500 8 GLY A 40 10.92 REMARK 500 REMARK 500 THIS ENTRY HAS 256 MAIN CHAIN PLANARITY DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 77 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 3 SG REMARK 620 2 CYS A 6 SG 106.6 REMARK 620 3 HIS A 24 ND1 92.9 93.2 REMARK 620 4 CYS A 27 SG 119.9 112.3 127.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 78 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 30 SG REMARK 620 2 CYS A 33 SG 106.2 REMARK 620 3 CYS A 51 SG 105.7 106.5 REMARK 620 4 CYS A 55 SG 106.3 124.5 106.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 77 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 78 DBREF 1IML A 1 76 UNP P04006 CRP1_MOUSE 1 76 SEQRES 1 A 76 PRO LYS CYS PRO LYS CYS ASP LYS GLU VAL TYR PHE ALA SEQRES 2 A 76 GLU ARG VAL THR SER LEU GLY LYS ASP TRP HIS ARG PRO SEQRES 3 A 76 CYS LEU LYS CYS GLU LYS CYS GLY LYS THR LEU THR SER SEQRES 4 A 76 GLY GLY HIS ALA GLU HIS GLU GLY LYS PRO TYR CYS ASN SEQRES 5 A 76 HIS PRO CYS TYR SER ALA MET PHE GLY PRO LYS GLY PHE SEQRES 6 A 76 GLY ARG GLY GLY ALA GLU SER HIS THR PHE LYS HET ZN A 77 1 HET ZN A 78 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 CYS A 51 MET A 59 1 9 SHEET 1 A 2 LYS A 2 CYS A 3 0 SHEET 2 A 2 LYS A 8 TYR A 11 -1 SHEET 1 B 2 ARG A 15 SER A 18 0 SHEET 2 B 2 LYS A 21 HIS A 24 -1 N TRP A 23 O VAL A 16 SHEET 1 C 2 LEU A 28 CYS A 30 0 SHEET 2 C 2 LYS A 35 THR A 38 -1 SHEET 1 D 2 HIS A 42 HIS A 45 0 SHEET 2 D 2 LYS A 48 CYS A 51 -1 N TYR A 50 O ALA A 43 LINK ZN ZN A 77 SG CYS A 3 1555 1555 2.31 LINK ZN ZN A 77 SG CYS A 6 1555 1555 2.30 LINK ZN ZN A 77 ND1 HIS A 24 1555 1555 2.02 LINK ZN ZN A 77 SG CYS A 27 1555 1555 2.30 LINK ZN ZN A 78 SG CYS A 30 1555 1555 2.31 LINK ZN ZN A 78 SG CYS A 33 1555 1555 2.30 LINK ZN ZN A 78 SG CYS A 51 1555 1555 2.31 LINK ZN ZN A 78 SG CYS A 55 1555 1555 2.31 CISPEP 1 HIS A 53 PRO A 54 1 -23.82 CISPEP 2 HIS A 53 PRO A 54 2 -18.47 CISPEP 3 HIS A 53 PRO A 54 3 -13.43 CISPEP 4 HIS A 53 PRO A 54 4 -22.07 CISPEP 5 HIS A 53 PRO A 54 5 -17.81 CISPEP 6 HIS A 53 PRO A 54 6 -24.41 CISPEP 7 HIS A 53 PRO A 54 7 -15.80 CISPEP 8 HIS A 53 PRO A 54 8 -14.54 CISPEP 9 HIS A 53 PRO A 54 9 -13.51 CISPEP 10 HIS A 53 PRO A 54 10 -14.63 CISPEP 11 HIS A 53 PRO A 54 11 -14.46 CISPEP 12 HIS A 53 PRO A 54 12 -12.74 CISPEP 13 HIS A 53 PRO A 54 13 -15.53 CISPEP 14 HIS A 53 PRO A 54 14 -21.02 CISPEP 15 HIS A 53 PRO A 54 15 -13.06 CISPEP 16 HIS A 53 PRO A 54 16 -15.81 CISPEP 17 HIS A 53 PRO A 54 17 -11.11 CISPEP 18 HIS A 53 PRO A 54 18 -11.61 CISPEP 19 HIS A 53 PRO A 54 19 -19.11 CISPEP 20 HIS A 53 PRO A 54 20 -14.78 CISPEP 21 HIS A 53 PRO A 54 21 -13.39 CISPEP 22 HIS A 53 PRO A 54 22 -14.68 CISPEP 23 HIS A 53 PRO A 54 23 -14.34 CISPEP 24 HIS A 53 PRO A 54 24 -20.73 CISPEP 25 HIS A 53 PRO A 54 25 -13.32 CISPEP 26 HIS A 53 PRO A 54 26 -12.31 CISPEP 27 HIS A 53 PRO A 54 27 -17.24 CISPEP 28 HIS A 53 PRO A 54 28 -11.36 CISPEP 29 HIS A 53 PRO A 54 29 -12.02 CISPEP 30 HIS A 53 PRO A 54 30 -22.26 CISPEP 31 HIS A 53 PRO A 54 31 -12.52 CISPEP 32 HIS A 53 PRO A 54 32 -12.70 CISPEP 33 HIS A 53 PRO A 54 33 -13.93 CISPEP 34 HIS A 53 PRO A 54 34 -14.09 CISPEP 35 HIS A 53 PRO A 54 35 -14.19 CISPEP 36 HIS A 53 PRO A 54 36 -11.99 CISPEP 37 HIS A 53 PRO A 54 37 -11.51 CISPEP 38 HIS A 53 PRO A 54 38 -10.82 CISPEP 39 HIS A 53 PRO A 54 39 -20.70 CISPEP 40 HIS A 53 PRO A 54 40 -19.08 CISPEP 41 HIS A 53 PRO A 54 41 -12.07 CISPEP 42 HIS A 53 PRO A 54 42 -12.28 CISPEP 43 HIS A 53 PRO A 54 43 -25.35 CISPEP 44 HIS A 53 PRO A 54 44 -11.52 CISPEP 45 HIS A 53 PRO A 54 45 -10.79 CISPEP 46 HIS A 53 PRO A 54 46 -13.63 CISPEP 47 HIS A 53 PRO A 54 47 -12.69 CISPEP 48 HIS A 53 PRO A 54 48 -9.17 SITE 1 AC1 4 CYS A 3 CYS A 6 HIS A 24 CYS A 27 SITE 1 AC2 4 CYS A 30 CYS A 33 CYS A 51 CYS A 55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000