PDB Short entry for 1IRG HEADER TRANSCRIPTION REGULATION 25-NOV-97 1IRG TITLE INTERFERON REGULATORY FACTOR-2 DNA BINDING DOMAIN, NMR, 20 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON REGULATORY FACTOR-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2 - 113; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL_LINE: BL21; SOURCE 6 CELLULAR_LOCATION: NUCLEUS; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (LAMBDA DE3); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BL21 KEYWDS TRANSCRIPTION REGULATION, WINGED HELIX-TURN-HELIX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.FURUI,K.UEGAKI,T.YAMAZAKI,M.SHIRAKAWA,M.B.SWINDELLS,H.HARADA, AUTHOR 2 T.TANIGUCHI,Y.KYOGOKU REVDAT 4 29-NOV-17 1IRG 1 REMARK HELIX REVDAT 3 24-FEB-09 1IRG 1 VERSN REVDAT 2 05-APR-00 1IRG 1 JRNL REVDAT 1 18-MAR-98 1IRG 0 JRNL AUTH J.FURUI,K.UEGAKI,T.YAMAZAKI,M.SHIRAKAWA,M.B.SWINDELLS, JRNL AUTH 2 H.HARADA,T.TANIGUCHI,Y.KYOGOKU JRNL TITL SOLUTION STRUCTURE OF THE IRF-2 DNA-BINDING DOMAIN: A NOVEL JRNL TITL 2 SUBGROUP OF THE WINGED HELIX-TURN-HELIX FAMILY. JRNL REF STRUCTURE V. 6 491 1998 JRNL REFN ISSN 0969-2126 JRNL PMID 9562558 JRNL DOI 10.1016/S0969-2126(98)00050-1 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.UEGAKI,M.SHIRAKAWA,H.HARADA,T.TANIGUCHI,Y.KYOGOKU REMARK 1 TITL SECONDARY STRUCTURE AND FOLDING TOPOLOGY OF THE DNA BINDING REMARK 1 TITL 2 DOMAIN OF INTERFERON REGULATORY FACTOR 2, AS REVEALED BY NMR REMARK 1 TITL 3 SPECTROSCOPY REMARK 1 REF FEBS LETT. V. 359 184 1995 REMARK 1 REFN ISSN 0014-5793 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURAL STATISTICS: AVERAGE SD RMSD REMARK 3 FROM EXPERIMENTAL DISTANCE RESTRAINTS ALL (1453) 0.025 A 0.001 A REMARK 3 INTRARESIDUE NOE (415) 0.022 A 0.001 A SEQUENTIAL NOE (|I-J|=1) REMARK 3 (381) 0.025 A 0.003 A MEDIUM RANGE NOE (1<|I-J|<5) (242) 0.026 A REMARK 3 0.004 A LONG RANGE NOE (|I-J|>=5) (363) 0.022 A 0.003 A HYDROGEN REMARK 3 BOND (52)* 0.051 A 0.002 A REMARK 4 REMARK 4 1IRG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174239. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.00 REMARK 210 PH : 5.70 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N-EDITED 3D NOESY; 13C -EDITED REMARK 210 3D NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX500; ARX500; ALPHA600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : THE LOWEST TARGET FUNCTIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 6 70.15 30.65 REMARK 500 1 ARG A 7 173.31 -58.14 REMARK 500 1 ASN A 19 74.85 75.27 REMARK 500 1 LYS A 25 -178.99 -176.97 REMARK 500 1 ASN A 28 70.17 -158.97 REMARK 500 1 TRP A 38 -144.88 68.80 REMARK 500 1 ALA A 41 -78.94 -142.38 REMARK 500 1 HIS A 44 -68.05 -155.33 REMARK 500 1 TRP A 46 25.71 40.27 REMARK 500 1 ASP A 47 85.81 148.49 REMARK 500 1 LEU A 54 -63.63 -93.11 REMARK 500 1 PHE A 55 -30.24 -35.07 REMARK 500 1 TRP A 58 -179.53 -49.73 REMARK 500 1 ALA A 59 -90.09 56.07 REMARK 500 1 HIS A 61 -86.00 -90.38 REMARK 500 1 ILE A 69 -46.40 -139.74 REMARK 500 1 SER A 87 -158.79 -99.85 REMARK 500 1 LEU A 88 104.05 31.45 REMARK 500 1 PRO A 89 29.02 -71.93 REMARK 500 1 ASP A 96 151.69 60.38 REMARK 500 1 ARG A 97 -77.36 -117.65 REMARK 500 1 ILE A 99 -61.18 -140.68 REMARK 500 1 ASN A 103 29.81 -166.48 REMARK 500 1 ASN A 104 -59.47 -147.95 REMARK 500 1 ALA A 105 86.62 57.75 REMARK 500 2 VAL A 3 102.46 -168.07 REMARK 500 2 ASN A 19 70.60 57.27 REMARK 500 2 LYS A 25 171.99 179.89 REMARK 500 2 ASN A 28 77.50 -159.11 REMARK 500 2 LYS A 32 50.05 81.65 REMARK 500 2 TRP A 38 -144.13 67.45 REMARK 500 2 MET A 39 42.99 -148.58 REMARK 500 2 HIS A 40 -87.97 67.13 REMARK 500 2 ALA A 41 75.71 176.04 REMARK 500 2 HIS A 44 -76.90 -156.57 REMARK 500 2 TRP A 46 29.85 39.49 REMARK 500 2 ASP A 47 54.26 151.66 REMARK 500 2 PHE A 55 -30.20 -36.15 REMARK 500 2 TRP A 58 -74.10 -41.64 REMARK 500 2 ALA A 59 -77.70 -33.86 REMARK 500 2 THR A 62 17.31 52.82 REMARK 500 2 HIS A 65 160.62 178.55 REMARK 500 2 ILE A 69 -45.56 -133.14 REMARK 500 2 SER A 87 -149.58 -99.31 REMARK 500 2 LEU A 88 101.06 30.75 REMARK 500 2 ASP A 96 108.80 61.58 REMARK 500 2 ARG A 97 -75.09 -43.33 REMARK 500 2 SER A 98 43.93 -149.56 REMARK 500 2 ILE A 99 -79.23 -121.57 REMARK 500 2 LYS A 101 41.33 -166.85 REMARK 500 REMARK 500 THIS ENTRY HAS 531 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IRF RELATED DB: PDB DBREF 1IRG A 2 113 UNP P23906 IRF2_MOUSE 2 113 SEQRES 1 A 112 PRO VAL GLU ARG MET ARG MET ARG PRO TRP LEU GLU GLU SEQRES 2 A 112 GLN ILE ASN SER ASN THR ILE PRO GLY LEU LYS TRP LEU SEQRES 3 A 112 ASN LYS GLU LYS LYS ILE PHE GLN ILE PRO TRP MET HIS SEQRES 4 A 112 ALA ALA ARG HIS GLY TRP ASP VAL GLU LYS ASP ALA PRO SEQRES 5 A 112 LEU PHE ARG ASN TRP ALA ILE HIS THR GLY LYS HIS GLN SEQRES 6 A 112 PRO GLY ILE ASP LYS PRO ASP PRO LYS THR TRP LYS ALA SEQRES 7 A 112 ASN PHE ARG CYS ALA MET ASN SER LEU PRO ASP ILE GLU SEQRES 8 A 112 GLU VAL LYS ASP ARG SER ILE LYS LYS GLY ASN ASN ALA SEQRES 9 A 112 PHE ARG VAL TYR ARG MET LEU PRO HELIX 1 H1 MET A 8 SER A 18 1 11 HELIX 2 H2 ALA A 52 HIS A 61 1 10 HELIX 3 H3 PRO A 74 MET A 85 1 12 SHEET 1 S1 4 LYS A 25 ASN A 28 0 SHEET 2 S1 4 ILE A 33 ILE A 36 -1 N GLN A 35 O LYS A 25 SHEET 3 S1 4 ARG A 107 MET A 111 -1 N TYR A 109 O PHE A 34 SHEET 4 S1 4 ILE A 91 VAL A 94 -1 N VAL A 94 O VAL A 108 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000