PDB Short entry for 1ISS HEADER SIGNALING PROTEIN 21-DEC-01 1ISS TITLE CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 TITLE 2 COMPLEXED WITH AN ANTAGONIST COMPND MOL_ID: 1; COMPND 2 MOLECULE: METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EXTRACELLULAR LIGAND BINDING REGION; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS SIGNAL TRANSDUCTION, NEUROTRANSMITTER, G PROTEIN COUPLED RECEPTOR, KEYWDS 2 ANTAGONIST, 4-CARBOXYPHENYLGLYCINE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.TSUCHIYA,N.KUNISHIMA,N.KAMIYA,H.JINGAMI,K.MORIKAWA REVDAT 4 25-OCT-23 1ISS 1 REMARK REVDAT 3 24-FEB-09 1ISS 1 VERSN REVDAT 2 07-JAN-03 1ISS 1 REMARK REVDAT 1 13-MAR-02 1ISS 0 JRNL AUTH D.TSUCHIYA,N.KUNISHIMA,N.KAMIYA,H.JINGAMI,K.MORIKAWA JRNL TITL STRUCTURAL VIEWS OF THE LIGAND-BINDING CORES OF A JRNL TITL 2 METABOTROPIC GLUTAMATE RECEPTOR COMPLEXED WITH AN ANTAGONIST JRNL TITL 3 AND BOTH GLUTAMATE AND GD3+. JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 2660 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 11867751 JRNL DOI 10.1073/PNAS.052708599 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.KUNISHIMA,Y.SHIMADA,Y.TSUJI,T.SATO,M.YAMAMOTO,T.KUMASAKA, REMARK 1 AUTH 2 S.NAKANISHI,H.JINGAMI,K.MORIKAWA REMARK 1 TITL STRUCTURAL BASIS OF GLUTAMATE RECOGNITION BY A DIMERIC REMARK 1 TITL 2 METABOTROPIC GLUTAMATE RECEPTOR REMARK 1 REF NATURE V. 407 971 2000 REMARK 1 REFN ISSN 0028-0836 REMARK 1 DOI 10.1038/35039564 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 26032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2062 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7094 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 31.00800 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 31.00800 REMARK 3 B13 (A**2) : -62.01600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM SIGMAA (A) : 0.85 REMARK 3 LOW RESOLUTION CUTOFF (A) : 0.48 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.58 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.96 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : 0.010 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ISS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JAN-02. REMARK 100 THE DEPOSITION ID IS D_1000005242. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL24XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.836 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27580 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: CHAIN A OF PDB ENTRY 1EWK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, TRIS-HCL, MCPG, PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 144.95250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 56.07100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.07100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.47625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.07100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 56.07100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 217.42875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.07100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.07100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 72.47625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 56.07100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.07100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 217.42875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 144.95250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 33 REMARK 465 SER A 34 REMARK 465 GLN A 35 REMARK 465 SER A 129 REMARK 465 ILE A 130 REMARK 465 ARG A 131 REMARK 465 ASP A 132 REMARK 465 GLU A 133 REMARK 465 LYS A 134 REMARK 465 ASP A 135 REMARK 465 GLY A 136 REMARK 465 LEU A 137 REMARK 465 ASN A 138 REMARK 465 ARG A 139 REMARK 465 CYS A 140 REMARK 465 LEU A 141 REMARK 465 PRO A 142 REMARK 465 ASP A 143 REMARK 465 GLY A 144 REMARK 465 GLN A 145 REMARK 465 THR A 146 REMARK 465 LEU A 147 REMARK 465 PRO A 148 REMARK 465 PRO A 149 REMARK 465 GLY A 150 REMARK 465 ARG A 151 REMARK 465 THR A 152 REMARK 465 LYS A 153 REMARK 465 GLN A 513 REMARK 465 MET A 514 REMARK 465 ASN A 515 REMARK 465 LYS A 516 REMARK 465 SER A 517 REMARK 465 GLY A 518 REMARK 465 MET A 519 REMARK 465 VAL A 520 REMARK 465 ARG A 521 REMARK 465 SER A 522 REMARK 465 SER B 33 REMARK 465 SER B 34 REMARK 465 GLN B 35 REMARK 465 SER B 129 REMARK 465 ILE B 130 REMARK 465 ARG B 131 REMARK 465 ASP B 132 REMARK 465 GLU B 133 REMARK 465 LYS B 134 REMARK 465 ASP B 135 REMARK 465 GLY B 136 REMARK 465 LEU B 137 REMARK 465 ASN B 138 REMARK 465 ARG B 139 REMARK 465 CYS B 140 REMARK 465 LEU B 141 REMARK 465 PRO B 142 REMARK 465 ASP B 143 REMARK 465 GLY B 144 REMARK 465 GLN B 145 REMARK 465 THR B 146 REMARK 465 LEU B 147 REMARK 465 PRO B 148 REMARK 465 PRO B 149 REMARK 465 GLY B 150 REMARK 465 ARG B 151 REMARK 465 THR B 152 REMARK 465 LYS B 153 REMARK 465 GLN B 513 REMARK 465 MET B 514 REMARK 465 ASN B 515 REMARK 465 LYS B 516 REMARK 465 SER B 517 REMARK 465 GLY B 518 REMARK 465 MET B 519 REMARK 465 VAL B 520 REMARK 465 ARG B 521 REMARK 465 SER B 522 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 125 CG OD1 OD2 REMARK 470 SER A 126 OG REMARK 470 LEU A 127 CG CD1 CD2 REMARK 470 ILE A 128 CG1 CG2 CD1 REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 ARG A 348 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 384 CG CD1 CD2 REMARK 470 ASN A 426 CG OD1 ND2 REMARK 470 ASN A 490 CG OD1 ND2 REMARK 470 ARG A 491 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 125 CG OD1 OD2 REMARK 470 SER B 126 OG REMARK 470 LEU B 127 CG CD1 CD2 REMARK 470 ILE B 128 CG1 CG2 CD1 REMARK 470 LYS B 268 CG CD CE NZ REMARK 470 LYS B 276 CG CD CE NZ REMARK 470 LYS B 283 CG CD CE NZ REMARK 470 ARG B 348 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 384 CG CD1 CD2 REMARK 470 ASN B 426 CG OD1 ND2 REMARK 470 ASN B 490 CG OD1 ND2 REMARK 470 ARG B 491 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 97 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 CYS B 439 CA - CB - SG ANGL. DEV. = 8.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 37 164.93 -43.14 REMARK 500 LEU A 50 73.41 -115.49 REMARK 500 PRO A 58 -177.32 -62.06 REMARK 500 GLN A 73 -77.27 -39.97 REMARK 500 MET A 82 -75.37 -41.30 REMARK 500 LEU A 96 77.76 24.43 REMARK 500 PRO A 97 -83.90 -44.38 REMARK 500 ASN A 98 48.61 -104.94 REMARK 500 TRP A 110 40.06 39.25 REMARK 500 TYR A 185 -13.56 -143.35 REMARK 500 SER A 189 150.03 -35.36 REMARK 500 LEU A 192 3.46 -50.75 REMARK 500 THR A 196 -3.99 -59.87 REMARK 500 LEU A 202 147.63 -178.99 REMARK 500 ASN A 223 11.98 39.99 REMARK 500 TYR A 226 110.79 -167.54 REMARK 500 ASN A 235 -8.28 -52.76 REMARK 500 TYR A 236 -75.29 -87.13 REMARK 500 MET A 241 -71.13 -53.49 REMARK 500 ALA A 249 -70.76 -48.83 REMARK 500 GLN A 250 -38.27 -37.28 REMARK 500 ALA A 256 -85.82 -54.65 REMARK 500 ILE A 261 144.05 178.61 REMARK 500 ALA A 265 150.84 -43.07 REMARK 500 PRO A 282 35.92 -87.24 REMARK 500 ALA A 321 -132.42 47.43 REMARK 500 GLU A 331 4.53 -51.50 REMARK 500 VAL A 332 -60.03 -105.22 REMARK 500 GLU A 333 4.51 -69.97 REMARK 500 ASN A 335 134.64 -36.41 REMARK 500 SER A 349 -34.09 -37.73 REMARK 500 ASN A 365 79.43 -102.45 REMARK 500 PHE A 368 -66.02 -20.44 REMARK 500 GLN A 377 70.60 44.47 REMARK 500 LEU A 384 -15.34 -46.36 REMARK 500 LYS A 392 -173.99 -65.58 REMARK 500 LEU A 400 -2.75 -58.11 REMARK 500 LYS A 456 16.50 -59.34 REMARK 500 ASP A 470 -157.58 -82.66 REMARK 500 ARG A 478 102.04 -165.34 REMARK 500 ALA A 489 -109.22 -74.92 REMARK 500 ASN A 490 67.42 -161.93 REMARK 500 ARG A 491 148.58 -179.22 REMARK 500 HIS A 501 59.84 -92.80 REMARK 500 GLU A 502 62.88 76.09 REMARK 500 SER B 37 162.38 -42.28 REMARK 500 PRO B 58 -171.69 -61.49 REMARK 500 GLN B 73 -78.94 -36.36 REMARK 500 ILE B 76 -39.66 -36.41 REMARK 500 MET B 82 -72.66 -39.74 REMARK 500 REMARK 500 THIS ENTRY HAS 88 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 185 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MCG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MCG B 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EWK RELATED DB: PDB REMARK 900 1EWK CONTAINS THE SAME PROTEIN COMPLEXED WITH GLUTAMATE REMARK 900 RELATED ID: 1EWT RELATED DB: PDB REMARK 900 1EWT CONTAINS THE SAME PROTEIN, LIGAND-FREE FORM I REMARK 900 RELATED ID: 1EWV RELATED DB: PDB REMARK 900 1EWV CONTAINS THE SAME PROTEIN, LIGAND-FREE FORM II REMARK 900 RELATED ID: 1ISR RELATED DB: PDB REMARK 900 1ISR CONTAINS THE SAME PROTEIN COMPLEXED WITH GLUTAMATE AND REMARK 900 GADOLINIUM ION DBREF 1ISS A 33 522 UNP P23385 MGR1_RAT 33 522 DBREF 1ISS B 33 522 UNP P23385 MGR1_RAT 33 522 SEQRES 1 A 490 SER SER GLN ARG SER VAL ALA ARG MET ASP GLY ASP VAL SEQRES 2 A 490 ILE ILE GLY ALA LEU PHE SER VAL HIS HIS GLN PRO PRO SEQRES 3 A 490 ALA GLU LYS VAL PRO GLU ARG LYS CYS GLY GLU ILE ARG SEQRES 4 A 490 GLU GLN TYR GLY ILE GLN ARG VAL GLU ALA MET PHE HIS SEQRES 5 A 490 THR LEU ASP LYS ILE ASN ALA ASP PRO VAL LEU LEU PRO SEQRES 6 A 490 ASN ILE THR LEU GLY SER GLU ILE ARG ASP SER CYS TRP SEQRES 7 A 490 HIS SER SER VAL ALA LEU GLU GLN SER ILE GLU PHE ILE SEQRES 8 A 490 ARG ASP SER LEU ILE SER ILE ARG ASP GLU LYS ASP GLY SEQRES 9 A 490 LEU ASN ARG CYS LEU PRO ASP GLY GLN THR LEU PRO PRO SEQRES 10 A 490 GLY ARG THR LYS LYS PRO ILE ALA GLY VAL ILE GLY PRO SEQRES 11 A 490 GLY SER SER SER VAL ALA ILE GLN VAL GLN ASN LEU LEU SEQRES 12 A 490 GLN LEU PHE ASP ILE PRO GLN ILE ALA TYR SER ALA THR SEQRES 13 A 490 SER ILE ASP LEU SER ASP LYS THR LEU TYR LYS TYR PHE SEQRES 14 A 490 LEU ARG VAL VAL PRO SER ASP THR LEU GLN ALA ARG ALA SEQRES 15 A 490 MET LEU ASP ILE VAL LYS ARG TYR ASN TRP THR TYR VAL SEQRES 16 A 490 SER ALA VAL HIS THR GLU GLY ASN TYR GLY GLU SER GLY SEQRES 17 A 490 MET ASP ALA PHE LYS GLU LEU ALA ALA GLN GLU GLY LEU SEQRES 18 A 490 CYS ILE ALA HIS SER ASP LYS ILE TYR SER ASN ALA GLY SEQRES 19 A 490 GLU LYS SER PHE ASP ARG LEU LEU ARG LYS LEU ARG GLU SEQRES 20 A 490 ARG LEU PRO LYS ALA ARG VAL VAL VAL CYS PHE CYS GLU SEQRES 21 A 490 GLY MET THR VAL ARG GLY LEU LEU SER ALA MET ARG ARG SEQRES 22 A 490 LEU GLY VAL VAL GLY GLU PHE SER LEU ILE GLY SER ASP SEQRES 23 A 490 GLY TRP ALA ASP ARG ASP GLU VAL ILE GLU GLY TYR GLU SEQRES 24 A 490 VAL GLU ALA ASN GLY GLY ILE THR ILE LYS LEU GLN SER SEQRES 25 A 490 PRO GLU VAL ARG SER PHE ASP ASP TYR PHE LEU LYS LEU SEQRES 26 A 490 ARG LEU ASP THR ASN THR ARG ASN PRO TRP PHE PRO GLU SEQRES 27 A 490 PHE TRP GLN HIS ARG PHE GLN CYS ARG LEU PRO GLY HIS SEQRES 28 A 490 LEU LEU GLU ASN PRO ASN PHE LYS LYS VAL CYS THR GLY SEQRES 29 A 490 ASN GLU SER LEU GLU GLU ASN TYR VAL GLN ASP SER LYS SEQRES 30 A 490 MET GLY PHE VAL ILE ASN ALA ILE TYR ALA MET ALA HIS SEQRES 31 A 490 GLY LEU GLN ASN MET HIS HIS ALA LEU CYS PRO GLY HIS SEQRES 32 A 490 VAL GLY LEU CYS ASP ALA MET LYS PRO ILE ASP GLY ARG SEQRES 33 A 490 LYS LEU LEU ASP PHE LEU ILE LYS SER SER PHE VAL GLY SEQRES 34 A 490 VAL SER GLY GLU GLU VAL TRP PHE ASP GLU LYS GLY ASP SEQRES 35 A 490 ALA PRO GLY ARG TYR ASP ILE MET ASN LEU GLN TYR THR SEQRES 36 A 490 GLU ALA ASN ARG TYR ASP TYR VAL HIS VAL GLY THR TRP SEQRES 37 A 490 HIS GLU GLY VAL LEU ASN ILE ASP ASP TYR LYS ILE GLN SEQRES 38 A 490 MET ASN LYS SER GLY MET VAL ARG SER SEQRES 1 B 490 SER SER GLN ARG SER VAL ALA ARG MET ASP GLY ASP VAL SEQRES 2 B 490 ILE ILE GLY ALA LEU PHE SER VAL HIS HIS GLN PRO PRO SEQRES 3 B 490 ALA GLU LYS VAL PRO GLU ARG LYS CYS GLY GLU ILE ARG SEQRES 4 B 490 GLU GLN TYR GLY ILE GLN ARG VAL GLU ALA MET PHE HIS SEQRES 5 B 490 THR LEU ASP LYS ILE ASN ALA ASP PRO VAL LEU LEU PRO SEQRES 6 B 490 ASN ILE THR LEU GLY SER GLU ILE ARG ASP SER CYS TRP SEQRES 7 B 490 HIS SER SER VAL ALA LEU GLU GLN SER ILE GLU PHE ILE SEQRES 8 B 490 ARG ASP SER LEU ILE SER ILE ARG ASP GLU LYS ASP GLY SEQRES 9 B 490 LEU ASN ARG CYS LEU PRO ASP GLY GLN THR LEU PRO PRO SEQRES 10 B 490 GLY ARG THR LYS LYS PRO ILE ALA GLY VAL ILE GLY PRO SEQRES 11 B 490 GLY SER SER SER VAL ALA ILE GLN VAL GLN ASN LEU LEU SEQRES 12 B 490 GLN LEU PHE ASP ILE PRO GLN ILE ALA TYR SER ALA THR SEQRES 13 B 490 SER ILE ASP LEU SER ASP LYS THR LEU TYR LYS TYR PHE SEQRES 14 B 490 LEU ARG VAL VAL PRO SER ASP THR LEU GLN ALA ARG ALA SEQRES 15 B 490 MET LEU ASP ILE VAL LYS ARG TYR ASN TRP THR TYR VAL SEQRES 16 B 490 SER ALA VAL HIS THR GLU GLY ASN TYR GLY GLU SER GLY SEQRES 17 B 490 MET ASP ALA PHE LYS GLU LEU ALA ALA GLN GLU GLY LEU SEQRES 18 B 490 CYS ILE ALA HIS SER ASP LYS ILE TYR SER ASN ALA GLY SEQRES 19 B 490 GLU LYS SER PHE ASP ARG LEU LEU ARG LYS LEU ARG GLU SEQRES 20 B 490 ARG LEU PRO LYS ALA ARG VAL VAL VAL CYS PHE CYS GLU SEQRES 21 B 490 GLY MET THR VAL ARG GLY LEU LEU SER ALA MET ARG ARG SEQRES 22 B 490 LEU GLY VAL VAL GLY GLU PHE SER LEU ILE GLY SER ASP SEQRES 23 B 490 GLY TRP ALA ASP ARG ASP GLU VAL ILE GLU GLY TYR GLU SEQRES 24 B 490 VAL GLU ALA ASN GLY GLY ILE THR ILE LYS LEU GLN SER SEQRES 25 B 490 PRO GLU VAL ARG SER PHE ASP ASP TYR PHE LEU LYS LEU SEQRES 26 B 490 ARG LEU ASP THR ASN THR ARG ASN PRO TRP PHE PRO GLU SEQRES 27 B 490 PHE TRP GLN HIS ARG PHE GLN CYS ARG LEU PRO GLY HIS SEQRES 28 B 490 LEU LEU GLU ASN PRO ASN PHE LYS LYS VAL CYS THR GLY SEQRES 29 B 490 ASN GLU SER LEU GLU GLU ASN TYR VAL GLN ASP SER LYS SEQRES 30 B 490 MET GLY PHE VAL ILE ASN ALA ILE TYR ALA MET ALA HIS SEQRES 31 B 490 GLY LEU GLN ASN MET HIS HIS ALA LEU CYS PRO GLY HIS SEQRES 32 B 490 VAL GLY LEU CYS ASP ALA MET LYS PRO ILE ASP GLY ARG SEQRES 33 B 490 LYS LEU LEU ASP PHE LEU ILE LYS SER SER PHE VAL GLY SEQRES 34 B 490 VAL SER GLY GLU GLU VAL TRP PHE ASP GLU LYS GLY ASP SEQRES 35 B 490 ALA PRO GLY ARG TYR ASP ILE MET ASN LEU GLN TYR THR SEQRES 36 B 490 GLU ALA ASN ARG TYR ASP TYR VAL HIS VAL GLY THR TRP SEQRES 37 B 490 HIS GLU GLY VAL LEU ASN ILE ASP ASP TYR LYS ILE GLN SEQRES 38 B 490 MET ASN LYS SER GLY MET VAL ARG SER HET MCG A1001 15 HET MCG B2001 15 HETNAM MCG (S)-(ALPHA)-METHYL-4-CARBOXYPHENYLGLYCINE HETSYN MCG 4-(1-AMINO-1-CARBOXY-ETHYL)-BENZOIC ACID FORMUL 3 MCG 2(C10 H11 N O4) HELIX 1 1 GLY A 75 ASP A 92 1 18 HELIX 2 2 HIS A 111 ILE A 128 1 18 HELIX 3 3 SER A 164 LEU A 177 1 14 HELIX 4 4 ILE A 190 SER A 193 5 4 HELIX 5 5 ASP A 194 LYS A 199 1 6 HELIX 6 6 ASP A 208 TYR A 222 1 15 HELIX 7 7 TYR A 236 GLY A 252 1 17 HELIX 8 8 GLY A 266 GLU A 279 1 14 HELIX 9 9 GLU A 292 LEU A 306 1 15 HELIX 10 10 ARG A 323 GLU A 328 1 6 HELIX 11 11 VAL A 347 LEU A 355 1 9 HELIX 12 12 TRP A 367 GLN A 377 1 11 HELIX 13 13 LYS A 409 CYS A 432 1 24 HELIX 14 14 CYS A 439 LYS A 443 5 5 HELIX 15 15 ASP A 446 LYS A 456 1 11 HELIX 16 16 GLY B 75 ASP B 92 1 18 HELIX 17 17 HIS B 111 ILE B 128 1 18 HELIX 18 18 SER B 164 LEU B 177 1 14 HELIX 19 19 ILE B 190 SER B 193 5 4 HELIX 20 20 ASP B 194 LYS B 199 1 6 HELIX 21 21 ASP B 208 TYR B 222 1 15 HELIX 22 22 TYR B 236 GLY B 252 1 17 HELIX 23 23 GLY B 266 GLU B 279 1 14 HELIX 24 24 GLU B 292 LEU B 306 1 15 HELIX 25 25 ARG B 323 GLU B 328 1 6 HELIX 26 26 ARG B 348 LEU B 355 1 8 HELIX 27 27 TRP B 367 GLN B 377 1 11 HELIX 28 28 LYS B 409 CYS B 432 1 24 HELIX 29 29 CYS B 439 LYS B 443 5 5 HELIX 30 30 ASP B 446 LYS B 456 1 11 SHEET 1 A 6 ALA A 39 MET A 41 0 SHEET 2 A 6 LEU A 101 ASP A 107 -1 O SER A 103 N MET A 41 SHEET 3 A 6 VAL A 45 PHE A 51 1 N ILE A 47 O GLY A 102 SHEET 4 A 6 ILE A 156 ILE A 160 1 O GLY A 158 N GLY A 48 SHEET 5 A 6 GLN A 182 ALA A 184 1 O ILE A 183 N VAL A 159 SHEET 6 A 6 PHE A 201 ARG A 203 1 O LEU A 202 N ALA A 184 SHEET 1 B 8 ILE A 255 ILE A 261 0 SHEET 2 B 8 VAL A 227 THR A 232 1 N VAL A 227 O ALA A 256 SHEET 3 B 8 VAL A 286 PHE A 290 1 O VAL A 286 N SER A 228 SHEET 4 B 8 SER A 313 GLY A 316 1 O ILE A 315 N CYS A 289 SHEET 5 B 8 ILE A 338 LEU A 342 1 O ILE A 338 N GLY A 316 SHEET 6 B 8 TYR A 479 TYR A 486 -1 O MET A 482 N THR A 339 SHEET 7 B 8 TYR A 492 TRP A 500 -1 O GLY A 498 N ILE A 481 SHEET 8 B 8 LEU A 505 ILE A 507 -1 O ASN A 506 N THR A 499 SHEET 1 C 2 SER A 458 VAL A 460 0 SHEET 2 C 2 GLU A 466 TRP A 468 -1 O VAL A 467 N PHE A 459 SHEET 1 D 6 ALA B 39 MET B 41 0 SHEET 2 D 6 LEU B 101 ASP B 107 -1 O SER B 103 N MET B 41 SHEET 3 D 6 VAL B 45 PHE B 51 1 N ALA B 49 O ARG B 106 SHEET 4 D 6 ILE B 156 ILE B 160 1 O GLY B 158 N GLY B 48 SHEET 5 D 6 GLN B 182 ALA B 184 1 O ILE B 183 N VAL B 159 SHEET 6 D 6 PHE B 201 ARG B 203 1 O LEU B 202 N ALA B 184 SHEET 1 E 8 ILE B 255 ILE B 261 0 SHEET 2 E 8 VAL B 227 THR B 232 1 N VAL B 227 O ALA B 256 SHEET 3 E 8 VAL B 286 PHE B 290 1 O VAL B 286 N SER B 228 SHEET 4 E 8 SER B 313 GLY B 316 1 O ILE B 315 N CYS B 289 SHEET 5 E 8 ILE B 338 LEU B 342 1 O ILE B 338 N GLY B 316 SHEET 6 E 8 TYR B 479 TYR B 486 -1 O MET B 482 N THR B 339 SHEET 7 E 8 TYR B 492 TRP B 500 -1 O GLY B 498 N ILE B 481 SHEET 8 E 8 LEU B 505 ILE B 507 -1 O ASN B 506 N THR B 499 SHEET 1 F 2 SER B 458 VAL B 460 0 SHEET 2 F 2 GLU B 466 TRP B 468 -1 O VAL B 467 N PHE B 459 SSBOND 1 CYS A 67 CYS A 109 1555 1555 2.03 SSBOND 2 CYS A 289 CYS A 291 1555 1555 2.04 SSBOND 3 CYS A 378 CYS A 394 1555 1555 2.03 SSBOND 4 CYS A 432 CYS A 439 1555 1555 2.03 SSBOND 5 CYS B 67 CYS B 109 1555 1555 2.04 SSBOND 6 CYS B 289 CYS B 291 1555 1555 2.04 SSBOND 7 CYS B 378 CYS B 394 1555 1555 2.03 SSBOND 8 CYS B 432 CYS B 439 1555 1555 2.03 CISPEP 1 GLY A 161 PRO A 162 0 -0.23 CISPEP 2 LEU A 281 PRO A 282 0 -0.16 CISPEP 3 LYS A 443 PRO A 444 0 -0.57 CISPEP 4 GLY B 161 PRO B 162 0 0.19 CISPEP 5 LEU B 281 PRO B 282 0 -0.39 CISPEP 6 LYS B 443 PRO B 444 0 -0.08 SITE 1 AC1 5 TYR A 74 SER A 165 SER A 186 THR A 188 SITE 2 AC1 5 LYS A 409 SITE 1 AC2 5 TYR B 74 TRP B 110 SER B 165 SER B 186 SITE 2 AC2 5 THR B 188 CRYST1 112.142 112.142 289.905 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008920 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003450 0.00000