PDB Short entry for 1J7L HEADER TRANSFERASE 17-MAY-01 1J7L TITLE CRYSTAL STRUCTURE OF 3',5"-AMINOGLYCOSIDE TITLE 2 PHOSPHOTRANSFERASE TYPE IIIA ADP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOGLYCOSIDE 3'-PHOSPHOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APH(3')III; COMPND 5 EC: 2.7.1.95; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPCRG6 KEYWDS ANTIBIOTIC RESISTANCE, KINASE, ATP-BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.L.BURK,W.C.HON,A.K.-W.LEUNG,A.M.BERGHUIS REVDAT 3 24-FEB-09 1J7L 1 VERSN REVDAT 2 01-APR-03 1J7L 1 JRNL REVDAT 1 08-AUG-01 1J7L 0 JRNL AUTH D.L.BURK,W.C.HON,A.K.LEUNG,A.M.BERGHUIS JRNL TITL STRUCTURAL ANALYSES OF NUCLEOTIDE BINDING TO AN JRNL TITL 2 AMINOGLYCOSIDE PHOSPHOTRANSFERASE. JRNL REF BIOCHEMISTRY V. 40 8756 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11467935 JRNL DOI 10.1021/BI010504P REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.C.HON,G.A.MCKAY,P.R.THOMPSON,R.M.SWEET, REMARK 1 AUTH 2 D.S.C.YANG,G.D.WRIGHT,A.M.BERGHUIS REMARK 1 TITL STRUCTURE OF AN ENZYME REQUIRED FOR ANTIBIOTIC REMARK 1 TITL 2 RESISTANCE REVEALS HOMOLOGY TO EUKARYOTIC PROTEIN REMARK 1 TITL 3 KINASES REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 89 887 1997 REMARK 1 REFN ISSN 0092-8674 REMARK 1 DOI 10.1016/S0092-8674(00)80274-3 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 44702935.640 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 30039 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3003 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4389 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 502 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4340 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 297 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.29 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.07 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.390 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.240 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.100 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.030 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 24.45 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1J7L COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-01. REMARK 100 THE RCSB ID CODE IS RCSB013459. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.050 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95428 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 37.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.21300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, MAGNESIUM ACETATE, SODIUM REMARK 280 CACODYLATE, ADENOSINE-5'-TRIPHOSPHATE , PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.85500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.65050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.62250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.65050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.85500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.62250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 3 CG CD CE NZ REMARK 480 LYS A 12 C CD CE NZ REMARK 480 LYS A 16 CG CD CE NZ REMARK 480 LYS A 51 CD CE NZ REMARK 480 LYS A 75 CD CE NZ REMARK 480 GLU A 103 CG CD OE1 OE2 REMARK 480 ASP A 104 CG OD1 OD2 REMARK 480 GLU A 105 CG CD OE1 OE2 REMARK 480 GLN A 106 CG CD OE1 NE2 REMARK 480 SER A 107 OG REMARK 480 LYS A 110 CD CE NZ REMARK 480 ASP A 153 CB CG OD1 OD2 REMARK 480 VAL A 154 CB CG1 CG2 REMARK 480 ASP A 155 CB CG OD1 OD2 REMARK 480 GLU A 157 CD OE1 OE2 REMARK 480 ASN A 158 CG OD1 ND2 REMARK 480 THR A 163 OG1 CG2 REMARK 480 LYS A 166 CD CE NZ REMARK 480 LYS A 199 CE NZ REMARK 480 ILE A 232 CG1 CG2 CD1 REMARK 480 GLU A 239 CG CD OE1 OE2 REMARK 480 LYS B 16 CG CD CE NZ REMARK 480 GLU B 103 CG CD OE1 OE2 REMARK 480 ASP B 104 CG OD1 OD2 REMARK 480 GLU B 105 CB CG CD OE1 OE2 REMARK 480 GLN B 106 CA CB CG CD OE1 NE2 REMARK 480 VAL B 154 CB CG1 CG2 REMARK 480 ASP B 155 CG OD1 OD2 REMARK 480 GLU B 157 CD OE1 OE2 REMARK 480 GLU B 161 CG CD OE1 OE2 REMARK 480 LYS B 166 CG CD CE NZ REMARK 480 LYS B 179 CE NZ REMARK 480 GLN B 236 CG CD OE1 NE2 REMARK 480 GLU B 239 CD OE1 OE2 REMARK 480 LEU B 240 CG CD1 CD2 REMARK 480 LYS B 248 CG CD CE NZ REMARK 480 GLU B 252 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 60 N GLU A 60 CA -0.224 REMARK 500 GLU A 60 CB GLU A 60 CG -0.193 REMARK 500 GLU A 60 CG GLU A 60 CD 0.153 REMARK 500 GLU A 60 CD GLU A 60 OE1 -0.084 REMARK 500 GLU A 60 CD GLU A 60 OE2 -0.175 REMARK 500 GLU A 60 CA GLU A 60 C 0.375 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 60 OE1 - CD - OE2 ANGL. DEV. = -13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 103 -87.96 -55.47 REMARK 500 GLU A 105 113.73 -160.13 REMARK 500 SER A 107 60.60 -162.04 REMARK 500 ASN A 134 50.58 -100.59 REMARK 500 ASP A 190 67.22 -155.24 REMARK 500 GLU B 103 -67.83 -1.54 REMARK 500 GLN B 106 98.86 -69.73 REMARK 500 ASN B 134 58.55 -100.89 REMARK 500 ASP B 153 130.71 -34.20 REMARK 500 VAL B 154 108.81 -54.60 REMARK 500 CYS B 156 -61.40 -134.99 REMARK 500 ASP B 190 58.65 -157.83 REMARK 500 ASP B 208 68.24 62.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 303 O3B REMARK 620 2 ASP A 208 OD2 86.5 REMARK 620 3 ADP A 303 O2A 75.7 93.4 REMARK 620 4 HOH A 482 O 102.5 96.6 169.7 REMARK 620 5 HOH A 438 O 92.5 174.9 81.5 88.5 REMARK 620 6 ASN A 195 OD1 166.8 97.9 91.6 89.4 82.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 208 OD1 REMARK 620 2 ASP A 208 OD2 61.7 REMARK 620 3 ADP A 303 O1B 86.3 86.9 REMARK 620 4 HOH A 479 O 86.3 94.6 170.6 REMARK 620 5 HOH A 483 O 85.9 147.6 90.3 83.4 REMARK 620 6 HOH A 423 O 163.9 102.3 95.0 93.7 110.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 195 OD1 REMARK 620 2 HOH B 402 O 93.4 REMARK 620 3 ADP B 304 O2A 92.5 173.8 REMARK 620 4 HOH B 467 O 86.6 91.6 86.9 REMARK 620 5 ADP B 304 O3B 171.9 94.6 79.5 94.1 REMARK 620 6 ASP B 208 OD2 91.1 86.5 95.2 176.9 88.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 452 O REMARK 620 2 HOH B 465 O 90.9 REMARK 620 3 HOH B 451 O 90.7 104.5 REMARK 620 4 ADP B 304 O1B 171.8 94.6 93.8 REMARK 620 5 ASP B 208 OD2 87.5 154.5 100.9 84.9 REMARK 620 6 ASP B 208 OD1 91.3 96.0 159.4 82.2 58.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 302 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 303 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J7I RELATED DB: PDB REMARK 900 1J7I CONTAINS THE APOENZYME FORM OF THIS PROTEIN REMARK 900 RELATED ID: 1J7U RELATED DB: PDB REMARK 900 1J7U CONTAINS THE THE SAME ENZYME COMPLEXED WITH AMPPNP DBREF 1J7L A 1 264 UNP P0A3Y5 KKA3_ENTFA 1 264 DBREF 1J7L B 1 264 UNP P0A3Y5 KKA3_ENTFA 1 264 SEQRES 1 A 264 MET ALA LYS MET ARG ILE SER PRO GLU LEU LYS LYS LEU SEQRES 2 A 264 ILE GLU LYS TYR ARG CYS VAL LYS ASP THR GLU GLY MET SEQRES 3 A 264 SER PRO ALA LYS VAL TYR LYS LEU VAL GLY GLU ASN GLU SEQRES 4 A 264 ASN LEU TYR LEU LYS MET THR ASP SER ARG TYR LYS GLY SEQRES 5 A 264 THR THR TYR ASP VAL GLU ARG GLU LYS ASP MET MET LEU SEQRES 6 A 264 TRP LEU GLU GLY LYS LEU PRO VAL PRO LYS VAL LEU HIS SEQRES 7 A 264 PHE GLU ARG HIS ASP GLY TRP SER ASN LEU LEU MET SER SEQRES 8 A 264 GLU ALA ASP GLY VAL LEU CYS SER GLU GLU TYR GLU ASP SEQRES 9 A 264 GLU GLN SER PRO GLU LYS ILE ILE GLU LEU TYR ALA GLU SEQRES 10 A 264 CYS ILE ARG LEU PHE HIS SER ILE ASP ILE SER ASP CYS SEQRES 11 A 264 PRO TYR THR ASN SER LEU ASP SER ARG LEU ALA GLU LEU SEQRES 12 A 264 ASP TYR LEU LEU ASN ASN ASP LEU ALA ASP VAL ASP CYS SEQRES 13 A 264 GLU ASN TRP GLU GLU ASP THR PRO PHE LYS ASP PRO ARG SEQRES 14 A 264 GLU LEU TYR ASP PHE LEU LYS THR GLU LYS PRO GLU GLU SEQRES 15 A 264 GLU LEU VAL PHE SER HIS GLY ASP LEU GLY ASP SER ASN SEQRES 16 A 264 ILE PHE VAL LYS ASP GLY LYS VAL SER GLY PHE ILE ASP SEQRES 17 A 264 LEU GLY ARG SER GLY ARG ALA ASP LYS TRP TYR ASP ILE SEQRES 18 A 264 ALA PHE CYS VAL ARG SER ILE ARG GLU ASP ILE GLY GLU SEQRES 19 A 264 GLU GLN TYR VAL GLU LEU PHE PHE ASP LEU LEU GLY ILE SEQRES 20 A 264 LYS PRO ASP TRP GLU LYS ILE LYS TYR TYR ILE LEU LEU SEQRES 21 A 264 ASP GLU LEU PHE SEQRES 1 B 264 MET ALA LYS MET ARG ILE SER PRO GLU LEU LYS LYS LEU SEQRES 2 B 264 ILE GLU LYS TYR ARG CYS VAL LYS ASP THR GLU GLY MET SEQRES 3 B 264 SER PRO ALA LYS VAL TYR LYS LEU VAL GLY GLU ASN GLU SEQRES 4 B 264 ASN LEU TYR LEU LYS MET THR ASP SER ARG TYR LYS GLY SEQRES 5 B 264 THR THR TYR ASP VAL GLU ARG GLU LYS ASP MET MET LEU SEQRES 6 B 264 TRP LEU GLU GLY LYS LEU PRO VAL PRO LYS VAL LEU HIS SEQRES 7 B 264 PHE GLU ARG HIS ASP GLY TRP SER ASN LEU LEU MET SER SEQRES 8 B 264 GLU ALA ASP GLY VAL LEU CYS SER GLU GLU TYR GLU ASP SEQRES 9 B 264 GLU GLN SER PRO GLU LYS ILE ILE GLU LEU TYR ALA GLU SEQRES 10 B 264 CYS ILE ARG LEU PHE HIS SER ILE ASP ILE SER ASP CYS SEQRES 11 B 264 PRO TYR THR ASN SER LEU ASP SER ARG LEU ALA GLU LEU SEQRES 12 B 264 ASP TYR LEU LEU ASN ASN ASP LEU ALA ASP VAL ASP CYS SEQRES 13 B 264 GLU ASN TRP GLU GLU ASP THR PRO PHE LYS ASP PRO ARG SEQRES 14 B 264 GLU LEU TYR ASP PHE LEU LYS THR GLU LYS PRO GLU GLU SEQRES 15 B 264 GLU LEU VAL PHE SER HIS GLY ASP LEU GLY ASP SER ASN SEQRES 16 B 264 ILE PHE VAL LYS ASP GLY LYS VAL SER GLY PHE ILE ASP SEQRES 17 B 264 LEU GLY ARG SER GLY ARG ALA ASP LYS TRP TYR ASP ILE SEQRES 18 B 264 ALA PHE CYS VAL ARG SER ILE ARG GLU ASP ILE GLY GLU SEQRES 19 B 264 GLU GLN TYR VAL GLU LEU PHE PHE ASP LEU LEU GLY ILE SEQRES 20 B 264 LYS PRO ASP TRP GLU LYS ILE LYS TYR TYR ILE LEU LEU SEQRES 21 B 264 ASP GLU LEU PHE HET MG A 301 1 HET MG A 302 1 HET MG B 301 1 HET MG B 302 1 HET ADP A 303 27 HET ADP B 304 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 MG 4(MG 2+) FORMUL 7 ADP 2(C10 H15 N5 O10 P2) FORMUL 9 HOH *297(H2 O) HELIX 1 1 SER A 7 GLU A 15 1 9 HELIX 2 2 ASP A 47 LYS A 51 5 5 HELIX 3 3 ASP A 56 GLU A 68 1 13 HELIX 4 4 CYS A 98 TYR A 102 1 5 HELIX 5 5 SER A 107 SER A 124 1 18 HELIX 6 6 SER A 135 ASN A 149 1 15 HELIX 7 7 ASP A 155 GLU A 160 5 6 HELIX 8 8 ASP A 167 GLU A 178 1 12 HELIX 9 9 LYS A 217 ILE A 232 1 16 HELIX 10 10 GLU A 235 GLY A 246 1 12 HELIX 11 11 ASP A 250 GLU A 262 1 13 HELIX 12 12 SER B 7 GLU B 15 1 9 HELIX 13 13 ASP B 47 LYS B 51 5 5 HELIX 14 14 ASP B 56 LEU B 67 1 12 HELIX 15 15 CYS B 98 TYR B 102 1 5 HELIX 16 16 SER B 107 ILE B 125 1 19 HELIX 17 17 SER B 135 ASN B 149 1 15 HELIX 18 18 CYS B 156 GLU B 160 5 5 HELIX 19 19 ASP B 167 GLU B 178 1 12 HELIX 20 20 LYS B 217 ILE B 232 1 16 HELIX 21 21 GLU B 235 GLY B 246 1 12 HELIX 22 22 ASP B 250 GLU B 262 1 13 SHEET 1 A 5 ARG A 18 LYS A 21 0 SHEET 2 A 5 LYS A 30 VAL A 35 -1 O LYS A 33 N VAL A 20 SHEET 3 A 5 ASN A 40 THR A 46 -1 O LEU A 41 N LEU A 34 SHEET 4 A 5 TRP A 85 SER A 91 -1 N SER A 86 O THR A 46 SHEET 5 A 5 VAL A 76 HIS A 82 -1 N LEU A 77 O LEU A 89 SHEET 1 B 3 VAL A 96 LEU A 97 0 SHEET 2 B 3 ILE A 196 LYS A 199 -1 N VAL A 198 O VAL A 96 SHEET 3 B 3 LYS A 202 PHE A 206 -1 O LYS A 202 N LYS A 199 SHEET 1 C 2 LEU A 184 SER A 187 0 SHEET 2 C 2 GLY A 213 ASP A 216 -1 O GLY A 213 N SER A 187 SHEET 1 D 5 ARG B 18 LYS B 21 0 SHEET 2 D 5 LYS B 30 VAL B 35 -1 N LYS B 33 O VAL B 20 SHEET 3 D 5 ASN B 40 THR B 46 -1 O LEU B 41 N LEU B 34 SHEET 4 D 5 TRP B 85 SER B 91 -1 N SER B 86 O THR B 46 SHEET 5 D 5 VAL B 76 HIS B 82 -1 N LEU B 77 O LEU B 89 SHEET 1 E 3 VAL B 96 LEU B 97 0 SHEET 2 E 3 ILE B 196 LYS B 199 -1 N VAL B 198 O VAL B 96 SHEET 3 E 3 LYS B 202 PHE B 206 -1 O LYS B 202 N LYS B 199 SHEET 1 F 2 LEU B 184 SER B 187 0 SHEET 2 F 2 GLY B 213 ASP B 216 -1 O GLY B 213 N SER B 187 SSBOND 1 CYS A 19 CYS B 156 1555 1555 2.03 SSBOND 2 CYS A 156 CYS B 19 1555 1555 2.03 LINK MG MG A 301 O3B ADP A 303 1555 1555 2.05 LINK MG MG A 301 OD2 ASP A 208 1555 1555 2.05 LINK MG MG A 301 O2A ADP A 303 1555 1555 2.06 LINK MG MG A 301 O HOH A 482 1555 1555 2.19 LINK MG MG A 301 O HOH A 438 1555 1555 2.10 LINK MG MG A 301 OD1 ASN A 195 1555 1555 2.12 LINK MG MG A 302 OD1 ASP A 208 1555 1555 2.21 LINK MG MG A 302 OD2 ASP A 208 1555 1555 2.04 LINK MG MG A 302 O1B ADP A 303 1555 1555 2.07 LINK MG MG A 302 O HOH A 479 1555 1555 2.13 LINK MG MG A 302 O HOH A 483 1555 1555 2.04 LINK MG MG A 302 O HOH A 423 1555 1555 1.93 LINK MG MG B 301 OD1 ASN B 195 1555 1555 2.21 LINK MG MG B 301 O HOH B 402 1555 1555 2.12 LINK MG MG B 301 O2A ADP B 304 1555 1555 2.03 LINK MG MG B 301 O HOH B 467 1555 1555 1.97 LINK MG MG B 301 O3B ADP B 304 1555 1555 2.00 LINK MG MG B 301 OD2 ASP B 208 1555 1555 2.11 LINK MG MG B 302 O HOH B 452 1555 1555 2.01 LINK MG MG B 302 O HOH B 465 1555 1555 1.90 LINK MG MG B 302 O HOH B 451 1555 1555 2.03 LINK MG MG B 302 O1B ADP B 304 1555 1555 1.98 LINK MG MG B 302 OD2 ASP B 208 1555 1555 2.20 LINK MG MG B 302 OD1 ASP B 208 1555 1555 2.26 SITE 1 AC1 6 ASN A 195 ASP A 208 MG A 302 ADP A 303 SITE 2 AC1 6 HOH A 438 HOH A 482 SITE 1 AC2 6 ASP A 208 MG A 301 ADP A 303 HOH A 423 SITE 2 AC2 6 HOH A 479 HOH A 483 SITE 1 AC3 5 ASN B 195 ASP B 208 ADP B 304 HOH B 402 SITE 2 AC3 5 HOH B 467 SITE 1 AC4 5 ASP B 208 ADP B 304 HOH B 451 HOH B 452 SITE 2 AC4 5 HOH B 465 SITE 1 AC5 24 ASP A 22 GLU A 24 SER A 27 VAL A 31 SITE 2 AC5 24 TYR A 42 LYS A 44 MET A 90 SER A 91 SITE 3 AC5 24 GLU A 92 ALA A 93 LEU A 97 SER A 194 SITE 4 AC5 24 ASN A 195 PHE A 197 ILE A 207 ASP A 208 SITE 5 AC5 24 MG A 301 MG A 302 HOH A 413 HOH A 423 SITE 6 AC5 24 HOH A 438 HOH A 483 HOH A 491 HOH A 542 SITE 1 AC6 26 ASP B 22 GLU B 24 SER B 27 VAL B 31 SITE 2 AC6 26 TYR B 42 LYS B 44 MET B 90 SER B 91 SITE 3 AC6 26 GLU B 92 ALA B 93 LEU B 97 SER B 194 SITE 4 AC6 26 ASN B 195 PHE B 197 ILE B 207 ASP B 208 SITE 5 AC6 26 MG B 301 MG B 302 HOH B 402 HOH B 439 SITE 6 AC6 26 HOH B 451 HOH B 459 HOH B 465 HOH B 467 SITE 7 AC6 26 HOH B 492 HOH B 520 CRYST1 49.710 91.245 131.301 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020117 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007616 0.00000