PDB Short entry for 1J9H
HEADER    RNA                                     25-MAY-01   1J9H              
TITLE     CRYSTAL STRUCTURE OF AN RNA DUPLEX WITH URIDINE BULGES                
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: 5'-R(*GP*UP*GP*UP*CP*GP*(CBR)P*AP*C)-3';                   
COMPND   3 CHAIN: A, B, C, D;                                                   
COMPND   4 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES                                                       
KEYWDS    URIDINE BULGE, RNA DUPLEX, A-FORM, KINK, METAL BINDING, RNA           
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    Y.XIONG,J.DENG,C.SUDARSANAKUMAR,M.SUNDARALINGAM                       
REVDAT   4   07-FEB-24 1J9H    1       REMARK LINK                              
REVDAT   3   24-FEB-09 1J9H    1       VERSN                                    
REVDAT   2   01-APR-03 1J9H    1       JRNL                                     
REVDAT   1   26-OCT-01 1J9H    0                                                
JRNL        AUTH   Y.XIONG,J.DENG,C.SUDARSANAKUMAR,M.SUNDARALINGAM              
JRNL        TITL   CRYSTAL STRUCTURE OF AN RNA DUPLEX R(GUGUCGCAC)(2) WITH      
JRNL        TITL 2 URIDINE BULGES.                                              
JRNL        REF    J.MOL.BIOL.                   V. 313   573 2001              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   11676540                                                     
JRNL        DOI    10.1006/JMBI.2001.5045                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.40 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.0                                              
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : NULL                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 20.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 2.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : NULL                           
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : NULL                           
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 97.8                           
REMARK   3   NUMBER OF REFLECTIONS             : 33271                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : NULL                            
REMARK   3   FREE R VALUE TEST SET SELECTION  : NULL                            
REMARK   3   R VALUE            (WORKING SET) : 0.212                           
REMARK   3   FREE R VALUE                     : 0.234                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : NULL                            
REMARK   3   FREE R VALUE TEST SET COUNT      : 3228                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : NULL                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : NULL                         
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : NULL                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : NULL                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : NULL                         
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : NULL                         
REMARK   3   BIN R VALUE           (WORKING SET) : NULL                         
REMARK   3   BIN FREE R VALUE                    : NULL                         
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : NULL                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : NULL                         
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : NULL                         
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 0                                       
REMARK   3   NUCLEIC ACID ATOMS       : 752                                     
REMARK   3   HETEROGEN ATOMS          : 4                                       
REMARK   3   SOLVENT ATOMS            : 146                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : NULL                            
REMARK   3   ESD FROM SIGMAA              (A) : NULL                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : NULL                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : NULL                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : NULL                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : NULL                            
REMARK   3   BOND ANGLES            (DEGREES) : NULL                            
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : NULL                            
REMARK   3   IMPROPER ANGLES        (DEGREES) : NULL                            
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : NULL                                      
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : NULL  ; NULL                 
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : NULL  ; NULL                 
REMARK   3   SIDE-CHAIN BOND              (A**2) : NULL  ; NULL                 
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : NULL                                                 
REMARK   3   KSOL        : NULL                                                 
REMARK   3   BSOL        : NULL                                                 
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1J9H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAY-01.                  
REMARK 100 THE DEPOSITION ID IS D_1000013527.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : NULL                               
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 6.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 14-BM-D                            
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.92                               
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 4                     
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : NULL                               
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 33934                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.400                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 20.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.3                               
REMARK 200  DATA REDUNDANCY                : 9.000                              
REMARK 200  R MERGE                    (I) : 0.08300                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 22.0000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : NULL                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : NULL                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: MAD                                            
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD                          
REMARK 200 SOFTWARE USED: MLPHARE                                               
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 37.09                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM SODIUM CACODYLATE (PH 6.0), 10MM    
REMARK 280  CALCIUM CHLORIDE, 100MM SODIUM CHLORIDE, AND 10%(V/V) MPD           
REMARK 280  AGAINST 50% MPD IN THE RESERVOIR, VAPOR DIFFUSION, HANGING DROP     
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -Y,X,Z+1/4                                              
REMARK 290       4555   Y,-X,Z+3/4                                              
REMARK 290       5555   -X,Y,-Z                                                 
REMARK 290       6555   X,-Y,-Z+1/2                                             
REMARK 290       7555   Y,X,-Z+3/4                                              
REMARK 290       8555   -Y,-X,-Z+1/4                                            
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       40.02000            
REMARK 290   SMTRY1   3  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       20.01000            
REMARK 290   SMTRY1   4  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       60.03000            
REMARK 290   SMTRY1   5 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   6  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000 -1.000000       40.02000            
REMARK 290   SMTRY1   7  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   7  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000       60.03000            
REMARK 290   SMTRY1   8  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   8 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000       20.01000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1, 2                                                    
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 2                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    HOH B   158     O    HOH B   220              2.19            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500      G A   1         0.06    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA A 103  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1   U A   4   OP2                                                    
REMARK 620 2   C A   5   OP1  93.3                                              
REMARK 620 3 HOH A 179   O    73.0  81.1                                        
REMARK 620 4 HOH A 234   O    77.5 168.6  89.8                                  
REMARK 620 5   C B  18   O2'  76.0 102.5 149.0  82.0                            
REMARK 620 6   C B  18   O3' 131.1  75.6 146.7 115.5  61.0                      
REMARK 620 7 HOH D 238   O   168.9  79.3  97.5 108.8 113.5  55.2                
REMARK 620 N                    1     2     3     4     5     6                 
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA A 103  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1   C A   5   OP1                                                    
REMARK 620 2 HOH A 179   O    58.3                                              
REMARK 620 3 HOH A 234   O   107.0  65.2                                        
REMARK 620 4   C B  18   O2'  81.4 101.4  68.3                                  
REMARK 620 5   C B  18   O3'  81.5 139.6 131.6  66.1                            
REMARK 620 6 HOH D 182   O   159.2 141.1  91.8  97.8  79.2                      
REMARK 620 7 HOH D 238   O    94.1 101.6 140.5 149.6  83.5  76.0                
REMARK 620 N                    1     2     3     4     5     6                 
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA B 104  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1   C A   9   O2'                                                    
REMARK 620 2   C A   9   O3'  61.3                                              
REMARK 620 3   U B  13   OP2  86.4 140.9                                        
REMARK 620 4   C B  14   OP1 106.1  73.7  97.2                                  
REMARK 620 5 HOH B 163   O    94.2 123.0  77.7 158.8                            
REMARK 620 6 HOH B 237   O   141.6 155.5  56.0  87.9  72.0                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA B 104  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1   C A   9   O3'                                                    
REMARK 620 2   C A   9   O2'  62.8                                              
REMARK 620 3 HOH A 196   O    85.9  93.4                                        
REMARK 620 4   C B  14   OP1  81.9  77.0 167.0                                  
REMARK 620 5 HOH B 163   O   129.2  67.8  86.2  98.1                            
REMARK 620 6 HOH B 252   O    78.5 139.5  95.2  86.7 152.3                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA C 101  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HOH B 118   O                                                      
REMARK 620 2   U C  22   OP2 154.1                                              
REMARK 620 3   C C  23   OP1  97.2  86.4                                        
REMARK 620 4 HOH C 110   O    84.0  85.5 163.6                                  
REMARK 620 5 HOH C 141   O    78.6  77.2  77.8  86.5                            
REMARK 620 6   C D  36   O3'  77.4 128.1  77.5 118.5 142.8                      
REMARK 620 7   C D  36   O2' 128.7  74.2 103.9  87.6 151.2  62.9                
REMARK 620 N                    1     2     3     4     5     6                 
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA D 102  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1   C C  27   O3'                                                    
REMARK 620 2   C C  27   O2'  63.2                                              
REMARK 620 3 HOH C 119   O   118.3  85.2                                        
REMARK 620 4   U D  31   OP2 124.0  71.8  87.8                                  
REMARK 620 5   C D  32   OP1  77.2 106.5 164.1  85.8                            
REMARK 620 6 HOH D 132   O    77.0 127.9  85.6 158.4  95.1                      
REMARK 620 7 HOH D 139   O   143.3 151.1  86.6  80.2  77.9  78.9                
REMARK 620 N                    1     2     3     4     5     6                 
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 101                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 102                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 103                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 104                  
DBREF  1J9H A    1     9  PDB    1J9H     1J9H             1      9             
DBREF  1J9H B   10    18  PDB    1J9H     1J9H            10     18             
DBREF  1J9H C   19    27  PDB    1J9H     1J9H            19     27             
DBREF  1J9H D   28    36  PDB    1J9H     1J9H            28     36             
SEQRES   1 A    9    G   U   G   U   C   G CBR   A   C                          
SEQRES   1 B    9    G   U   G   U   C   G CBR   A   C                          
SEQRES   1 C    9    G   U   G   U   C   G CBR   A   C                          
SEQRES   1 D    9    G   U   G   U   C   G CBR   A   C                          
MODRES 1J9H CBR A    7   DC                                                     
MODRES 1J9H CBR B   16   DC                                                     
MODRES 1J9H CBR C   25   DC                                                     
MODRES 1J9H CBR D   34   DC                                                     
HET    CBR  A   7      20                                                       
HET    CBR  B  16      20                                                       
HET    CBR  C  25      20                                                       
HET    CBR  D  34      20                                                       
HET     CA  A 103       2                                                       
HET     CA  B 104       2                                                       
HET     CA  C 101       1                                                       
HET     CA  D 102       1                                                       
HETNAM     CBR 5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE                       
HETNAM      CA CALCIUM ION                                                      
FORMUL   1  CBR    4(C9 H13 BR N3 O7 P)                                         
FORMUL   5   CA    4(CA 2+)                                                     
FORMUL   9  HOH   *146(H2 O)                                                    
LINK         O3'   G A   6                 P   CBR A   7     1555   1555  1.60  
LINK         O3' CBR A   7                 P     A A   8     1555   1555  1.63  
LINK         O3'   G B  15                 P   CBR B  16     1555   1555  1.62  
LINK         O3' CBR B  16                 P     A B  17     1555   1555  1.60  
LINK         O3'   G C  24                 P   CBR C  25     1555   1555  1.61  
LINK         O3' CBR C  25                 P     A C  26     1555   1555  1.61  
LINK         O3'   G D  33                 P   CBR D  34     1555   1555  1.60  
LINK         O3' CBR D  34                 P     A D  35     1555   1555  1.62  
LINK         OP2   U A   4                CA  A CA A 103     1555   1555  2.52  
LINK         OP1   C A   5                CA  A CA A 103     1555   1555  2.01  
LINK         OP1   C A   5                CA  B CA A 103     1555   1555  2.55  
LINK         O2'   C A   9                CA  B CA B 104     6575   1555  2.27  
LINK         O3'   C A   9                CA  B CA B 104     6575   1555  3.00  
LINK         O3'   C A   9                CA  A CA B 104     6575   1555  2.25  
LINK         O2'   C A   9                CA  A CA B 104     6575   1555  2.93  
LINK        CA  A CA A 103                 O   HOH A 179     1555   1555  2.45  
LINK        CA  B CA A 103                 O   HOH A 179     1555   1555  3.30  
LINK        CA  A CA A 103                 O   HOH A 234     1555   1555  2.02  
LINK        CA  B CA A 103                 O   HOH A 234     1555   1555  2.44  
LINK        CA  A CA A 103                 O2'   C B  18     1555   6565  2.42  
LINK        CA  A CA A 103                 O3'   C B  18     1555   6565  2.87  
LINK        CA  B CA A 103                 O2'   C B  18     1555   6565  2.76  
LINK        CA  B CA A 103                 O3'   C B  18     1555   6565  2.12  
LINK        CA  B CA A 103                 O   HOH D 182     1555   1555  2.64  
LINK        CA  B CA A 103                 O   HOH D 238     1555   1555  2.09  
LINK        CA  A CA A 103                 O   HOH D 238     1555   1555  3.15  
LINK         O   HOH A 196                CA  A CA B 104     6575   1555  2.32  
LINK         OP2   U B  13                CA  B CA B 104     1555   1555  2.50  
LINK         OP1   C B  14                CA  A CA B 104     1555   1555  2.44  
LINK         OP1   C B  14                CA  B CA B 104     1555   1555  1.93  
LINK        CA  A CA B 104                 O   HOH B 163     1555   1555  2.56  
LINK        CA  B CA B 104                 O   HOH B 163     1555   1555  1.92  
LINK        CA  B CA B 104                 O   HOH B 237     1555   1555  3.36  
LINK        CA  A CA B 104                 O   HOH B 252     1555   1555  2.26  
LINK         O   HOH B 118                CA    CA C 101     2765   1555  2.48  
LINK         OP2   U C  22                CA    CA C 101     1555   1555  2.30  
LINK         OP1   C C  23                CA    CA C 101     1555   1555  2.33  
LINK         O3'   C C  27                CA    CA D 102     5656   1555  2.52  
LINK         O2'   C C  27                CA    CA D 102     5656   1555  2.42  
LINK        CA    CA C 101                 O   HOH C 110     1555   1555  2.29  
LINK        CA    CA C 101                 O   HOH C 141     1555   1555  2.43  
LINK        CA    CA C 101                 O3'   C D  36     1555   5756  2.53  
LINK        CA    CA C 101                 O2'   C D  36     1555   5756  2.39  
LINK         O   HOH C 119                CA    CA D 102     5656   1555  2.27  
LINK         OP2   U D  31                CA    CA D 102     1555   1555  2.33  
LINK         OP1   C D  32                CA    CA D 102     1555   1555  2.34  
LINK        CA    CA D 102                 O   HOH D 132     1555   1555  2.47  
LINK        CA    CA D 102                 O   HOH D 139     1555   1555  2.47  
SITE     1 AC1  6 HOH B 118    U C  22    C C  23  HOH C 110                    
SITE     2 AC1  6 HOH C 141    C D  36                                          
SITE     1 AC2  6   C C  27  HOH C 119    U D  31    C D  32                    
SITE     2 AC2  6 HOH D 132  HOH D 139                                          
SITE     1 AC3  7   U A   4    C A   5  HOH A 179  HOH A 234                    
SITE     2 AC3  7   C B  18  HOH D 182  HOH D 238                               
SITE     1 AC4  6   C A   9  HOH A 196    U B  13    C B  14                    
SITE     2 AC4  6 HOH B 163  HOH B 252                                          
CRYST1   47.180   47.180   80.040  90.00  90.00  90.00 P 41 2 2     32          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.021195  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.021195  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.012494        0.00000