PDB Short entry for 1JDM HEADER MEMBRANE PROTEIN 14-JUN-01 1JDM TITLE NMR STRUCTURE OF SARCOLIPIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARCOLIPIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HOMO SAPIENS SOURCE 4 (HUMANS). KEYWDS HELIX, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 16 AUTHOR G.VEGLIA,A.MASCIONI REVDAT 3 23-FEB-22 1JDM 1 REMARK REVDAT 2 24-FEB-09 1JDM 1 VERSN REVDAT 1 13-FEB-02 1JDM 0 JRNL AUTH A.MASCIONI,C.KARIM,G.BARANY,D.D.THOMAS,G.VEGLIA JRNL TITL STRUCTURE AND ORIENTATION OF SARCOLIPIN IN LIPID JRNL TITL 2 ENVIRONMENTS. JRNL REF BIOCHEMISTRY V. 41 475 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 11781085 JRNL DOI 10.1021/BI011243M REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CNS 1.0 REMARK 3 AUTHORS : VARIAN (VNMR), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JDM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1000013656. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 323 REMARK 210 PH : 4 REMARK 210 IONIC STRENGTH : 20 MM SODIUM PHOSPHATE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.7 MM SARCOLIPIN; 20MM REMARK 210 PHOSPHATE BUFFER; 600 MM SDS; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.8, SPARKY 3.98 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 7 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 3 62.65 60.78 REMARK 500 1 ASN A 4 68.28 -174.54 REMARK 500 1 THR A 5 174.02 -52.71 REMARK 500 1 LEU A 24 -31.61 -135.01 REMARK 500 1 ARG A 27 -72.60 -44.36 REMARK 500 1 SER A 28 33.14 -166.73 REMARK 500 1 TYR A 29 81.39 -154.38 REMARK 500 2 ARG A 6 -9.99 156.06 REMARK 500 2 LEU A 10 -70.25 -55.08 REMARK 500 2 ILE A 20 -74.58 -64.76 REMARK 500 2 LEU A 24 -32.60 -135.02 REMARK 500 2 ARG A 27 -70.61 -75.13 REMARK 500 2 SER A 28 44.12 -172.66 REMARK 500 2 TYR A 29 27.47 43.91 REMARK 500 2 GLN A 30 -157.10 34.94 REMARK 500 3 ASN A 4 -127.33 -61.33 REMARK 500 3 THR A 5 -171.48 46.44 REMARK 500 3 GLU A 7 106.35 11.91 REMARK 500 3 LEU A 8 -37.85 85.97 REMARK 500 3 ILE A 14 -73.30 -85.58 REMARK 500 3 ILE A 20 -76.47 -62.80 REMARK 500 3 LEU A 24 -47.41 -133.52 REMARK 500 3 ARG A 27 -34.99 -39.66 REMARK 500 4 ARG A 6 -101.19 -98.82 REMARK 500 4 GLU A 7 -86.43 47.66 REMARK 500 4 LEU A 10 -84.68 -47.05 REMARK 500 4 LEU A 24 -66.83 -127.57 REMARK 500 4 ARG A 27 47.57 -107.89 REMARK 500 4 SER A 28 31.42 -165.48 REMARK 500 4 TYR A 29 -102.31 -152.13 REMARK 500 5 ASN A 4 -142.30 45.37 REMARK 500 5 THR A 5 -112.62 48.41 REMARK 500 5 ARG A 6 -31.61 167.83 REMARK 500 5 MET A 22 -70.37 -71.11 REMARK 500 5 LEU A 24 -61.86 -134.21 REMARK 500 5 ARG A 27 -82.97 -61.42 REMARK 500 5 SER A 28 65.19 66.91 REMARK 500 5 TYR A 29 62.53 -118.55 REMARK 500 5 GLN A 30 42.49 179.88 REMARK 500 6 ILE A 3 -105.19 -88.01 REMARK 500 6 THR A 5 -167.33 -75.53 REMARK 500 6 ARG A 6 74.64 -175.73 REMARK 500 6 GLU A 7 67.56 68.72 REMARK 500 6 ILE A 20 -74.12 -58.77 REMARK 500 6 LEU A 24 -71.34 -94.70 REMARK 500 7 ASN A 4 -72.84 66.28 REMARK 500 7 ARG A 6 -49.38 179.37 REMARK 500 7 GLU A 7 -150.25 40.26 REMARK 500 7 LEU A 8 49.62 -89.01 REMARK 500 7 ILE A 14 -71.65 -88.50 REMARK 500 REMARK 500 THIS ENTRY HAS 118 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1JDM A 1 31 UNP O00631 SARCO_HUMAN 1 31 SEQRES 1 A 31 MET GLY ILE ASN THR ARG GLU LEU PHE LEU ASN PHE THR SEQRES 2 A 31 ILE VAL LEU ILE THR VAL ILE LEU MET TRP LEU LEU VAL SEQRES 3 A 31 ARG SER TYR GLN TYR HELIX 1 1 LEU A 8 VAL A 26 1 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000