PDB Short entry for 1JEI HEADER MEMBRANE PROTEIN 18-JUN-01 1JEI TITLE LEM DOMAIN OF HUMAN INNER NUCLEAR MEMBRANE PROTEIN EMERIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: EMERIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LEM DOMAIN (RESIDUES 2-54); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICAL SYNTHESIS KEYWDS EMERIN NUCLEUS MEMBRANE DOMAIN DYSTROPHY, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR N.WOLFF,B.GILQUIN,K.COURCHAY,I.CALLEBAUT,S.ZINN-JUSTIN REVDAT 4 23-FEB-22 1JEI 1 REMARK REVDAT 3 24-FEB-09 1JEI 1 VERSN REVDAT 2 17-JUN-03 1JEI 1 JRNL REVDAT 1 04-JUL-01 1JEI 0 JRNL AUTH N.WOLFF,B.GILQUIN,K.COURCHAY,I.CALLEBAUT,H.J.WORMAN, JRNL AUTH 2 S.ZINN-JUSTIN JRNL TITL STRUCTURAL ANALYSIS OF EMERIN, AN INNER NUCLEAR MEMBRANE JRNL TITL 2 PROTEIN MUTATED IN X-LINKED EMERY-DREIFUSS MUSCULAR JRNL TITL 3 DYSTROPHY JRNL REF FEBS LETT. V. 501 171 2001 JRNL REFN ISSN 0014-5793 JRNL PMID 11470279 JRNL DOI 10.1016/S0014-5793(01)02649-7 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.LAGURI,B.GILQUIN,N.WOLFF,R.ROMI-LEBRUN,K.COURCHAY, REMARK 1 AUTH 2 I.CALLEBAUT,H.J.WORMAN,S.ZINN-JUSTIN REMARK 1 TITL STRUCTURAL CHARACTERIZATION OF THE LEM MOTIF COMMON TO THREE REMARK 1 TITL 2 HUMAN INNER NUCLAR MEMBRANE PROTEINS. REMARK 1 REF STRUCTURE V. 9 503 2001 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(01)00611-6 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 2.0, X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JEI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-01. REMARK 100 THE DEPOSITION ID IS D_1000013682. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 20MM REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : LEM DOMAIN OF EMERIN 1MM REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1 REMARK 210 METHOD USED : SEMI-AUTOMATED ITERATIVE REMARK 210 PROCEDURE USING X-PLOR AND HOME- REMARK 210 WRITTEN C-SHELL PROGRAMS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 2 50.54 -179.09 REMARK 500 1 ASP A 5 -50.92 -134.42 REMARK 500 1 LEU A 6 166.28 -48.75 REMARK 500 1 SER A 7 -165.04 -121.32 REMARK 500 1 ASN A 19 43.04 83.60 REMARK 500 1 PRO A 21 89.78 -63.11 REMARK 500 1 THR A 29 40.65 -82.20 REMARK 500 1 ILE A 37 4.52 -57.17 REMARK 500 1 PHE A 38 -63.77 -92.19 REMARK 500 1 GLN A 43 -36.27 177.99 REMARK 500 1 ARG A 45 -49.85 -169.41 REMARK 500 1 ARG A 46 -69.18 -137.73 REMARK 500 1 SER A 48 166.34 -43.64 REMARK 500 1 SER A 51 -71.79 -114.47 REMARK 500 1 SER A 52 -79.46 -136.88 REMARK 500 2 ASN A 2 42.81 -166.98 REMARK 500 2 LEU A 6 52.67 -175.19 REMARK 500 2 SER A 7 167.97 -38.42 REMARK 500 2 ASP A 8 -48.89 -29.04 REMARK 500 2 ASN A 19 35.31 95.34 REMARK 500 2 PRO A 21 88.05 -62.66 REMARK 500 2 SER A 28 -60.35 -141.06 REMARK 500 2 LYS A 36 37.14 -86.95 REMARK 500 2 TYR A 40 -19.72 -47.98 REMARK 500 2 GLU A 41 -54.01 -122.34 REMARK 500 2 ARG A 44 -120.33 96.86 REMARK 500 2 ARG A 45 -80.68 -166.08 REMARK 500 2 ARG A 46 -50.09 -125.16 REMARK 500 3 ASN A 2 44.61 -142.11 REMARK 500 3 ASP A 5 -58.49 -134.72 REMARK 500 3 LEU A 6 167.88 -43.81 REMARK 500 3 SER A 7 -164.57 -124.00 REMARK 500 3 ASN A 19 38.11 83.62 REMARK 500 3 PRO A 21 94.95 -61.78 REMARK 500 3 THR A 29 35.79 -141.26 REMARK 500 3 LYS A 36 30.98 -87.03 REMARK 500 3 ARG A 44 -139.48 79.67 REMARK 500 3 ARG A 45 -84.53 -178.64 REMARK 500 3 ARG A 46 -76.58 -115.24 REMARK 500 3 LEU A 47 -7.71 80.32 REMARK 500 3 SER A 48 177.12 178.36 REMARK 500 3 SER A 51 -135.58 -147.39 REMARK 500 3 SER A 52 -69.61 -98.44 REMARK 500 4 ASN A 2 55.00 -177.29 REMARK 500 4 TYR A 3 42.49 -85.06 REMARK 500 4 ALA A 4 26.26 -159.54 REMARK 500 4 ASP A 5 42.60 -170.30 REMARK 500 4 LEU A 6 32.38 -140.11 REMARK 500 4 SER A 7 -154.04 18.23 REMARK 500 4 ASN A 19 33.93 91.93 REMARK 500 REMARK 500 THIS ENTRY HAS 139 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 16 0.28 SIDE CHAIN REMARK 500 1 ARG A 17 0.27 SIDE CHAIN REMARK 500 1 ARG A 30 0.16 SIDE CHAIN REMARK 500 1 ARG A 31 0.10 SIDE CHAIN REMARK 500 1 ARG A 44 0.30 SIDE CHAIN REMARK 500 1 ARG A 45 0.28 SIDE CHAIN REMARK 500 1 ARG A 46 0.31 SIDE CHAIN REMARK 500 2 ARG A 16 0.10 SIDE CHAIN REMARK 500 2 ARG A 17 0.27 SIDE CHAIN REMARK 500 2 ARG A 30 0.10 SIDE CHAIN REMARK 500 2 ARG A 31 0.27 SIDE CHAIN REMARK 500 2 ARG A 44 0.18 SIDE CHAIN REMARK 500 2 ARG A 45 0.31 SIDE CHAIN REMARK 500 2 ARG A 46 0.24 SIDE CHAIN REMARK 500 3 ARG A 16 0.25 SIDE CHAIN REMARK 500 3 ARG A 17 0.20 SIDE CHAIN REMARK 500 3 ARG A 30 0.25 SIDE CHAIN REMARK 500 3 ARG A 31 0.32 SIDE CHAIN REMARK 500 3 ARG A 44 0.31 SIDE CHAIN REMARK 500 3 ARG A 45 0.26 SIDE CHAIN REMARK 500 3 ARG A 46 0.23 SIDE CHAIN REMARK 500 4 ARG A 16 0.14 SIDE CHAIN REMARK 500 4 ARG A 17 0.31 SIDE CHAIN REMARK 500 4 ARG A 30 0.31 SIDE CHAIN REMARK 500 4 ARG A 31 0.21 SIDE CHAIN REMARK 500 4 ARG A 44 0.15 SIDE CHAIN REMARK 500 4 ARG A 45 0.26 SIDE CHAIN REMARK 500 4 ARG A 46 0.22 SIDE CHAIN REMARK 500 5 ARG A 16 0.31 SIDE CHAIN REMARK 500 5 ARG A 17 0.16 SIDE CHAIN REMARK 500 5 ARG A 30 0.20 SIDE CHAIN REMARK 500 5 ARG A 31 0.28 SIDE CHAIN REMARK 500 5 ARG A 44 0.11 SIDE CHAIN REMARK 500 5 ARG A 45 0.20 SIDE CHAIN REMARK 500 5 ARG A 46 0.24 SIDE CHAIN REMARK 500 6 ARG A 16 0.28 SIDE CHAIN REMARK 500 6 ARG A 17 0.31 SIDE CHAIN REMARK 500 6 ARG A 30 0.32 SIDE CHAIN REMARK 500 6 ARG A 31 0.28 SIDE CHAIN REMARK 500 6 ARG A 44 0.29 SIDE CHAIN REMARK 500 6 ARG A 45 0.31 SIDE CHAIN REMARK 500 6 ARG A 46 0.30 SIDE CHAIN REMARK 500 7 ARG A 16 0.31 SIDE CHAIN REMARK 500 7 ARG A 17 0.21 SIDE CHAIN REMARK 500 7 ARG A 30 0.26 SIDE CHAIN REMARK 500 7 ARG A 31 0.29 SIDE CHAIN REMARK 500 7 ARG A 44 0.22 SIDE CHAIN REMARK 500 7 ARG A 46 0.32 SIDE CHAIN REMARK 500 8 ARG A 16 0.32 SIDE CHAIN REMARK 500 8 ARG A 17 0.15 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 67 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H9E RELATED DB: PDB REMARK 900 1H9E CONTAINS LEM-LIKE DOMAIN OF HUMAN INNER NUCLEAR MEMBRANE REMARK 900 PROTEIN LAP2 REMARK 900 RELATED ID: 1H9F RELATED DB: PDB REMARK 900 1H9F CONTAINS LEM DOMAIN OF HUMAN INNER NUCLEAR MEMBRANE PROTEIN REMARK 900 LAP2 DBREF 1JEI A 1 53 UNP P50402 EMD_HUMAN 2 54 SEQRES 1 A 53 ASP ASN TYR ALA ASP LEU SER ASP THR GLU LEU THR THR SEQRES 2 A 53 LEU LEU ARG ARG TYR ASN ILE PRO HIS GLY PRO VAL VAL SEQRES 3 A 53 GLY SER THR ARG ARG LEU TYR GLU LYS LYS ILE PHE GLU SEQRES 4 A 53 TYR GLU THR GLN ARG ARG ARG LEU SER PRO PRO SER SER SEQRES 5 A 53 SER HELIX 1 1 SER A 7 ARG A 16 1 10 HELIX 2 2 GLY A 27 THR A 29 5 3 HELIX 3 3 ARG A 30 ILE A 37 1 8 HELIX 4 4 PHE A 38 THR A 42 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000