PDB Short entry for 1JOL HEADER OXIDOREDUCTASE 25-FEB-96 1JOL TITLE THE CRYSTAL STRUCTURE OF THE BINARY COMPLEX BETWEEN FOLINIC TITLE 2 ACID (LEUCOVORIN) AND E. COLI DIHYDROFOLATE REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 5,6,7,8-TETRAHYDROFOLATE\: 2 NADP+ OXIDOREDUCTASE; COMPND 5 EC: 1.5.1.3; COMPND 6 OTHER_DETAILS: IN BINARY COMPLEX WITH FOLINIC ACID COMPND 7 (LEUCOVORIN) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS METHOTREXATE RESISTANCE, ONE-CARBON METABOLISM, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.LEE,V.M.REYES,J.KRAUT REVDAT 2 24-FEB-09 1JOL 1 VERSN REVDAT 1 08-NOV-96 1JOL 0 JRNL AUTH H.LEE,V.M.REYES,J.KRAUT JRNL TITL CRYSTAL STRUCTURES OF ESCHERICHIA COLI JRNL TITL 2 DIHYDROFOLATE REDUCTASE COMPLEXED WITH JRNL TITL 3 5-FORMYLTETRAHYDROFOLATE (FOLINIC ACID) IN TWO JRNL TITL 4 SPACE GROUPS: EVIDENCE FOR ENOLIZATION OF JRNL TITL 5 PTERIDINE O4. JRNL REF BIOCHEMISTRY V. 35 7012 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8679526 JRNL DOI 10.1021/BI960028G REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.M.REYES,M.R.SAWAYA,K.A.BROWN,J.KRAUT REMARK 1 TITL ISOMORPHOUS CRYSTAL STRUCTURES OF ESCHERICHIA COLI REMARK 1 TITL 2 DIHYDROFOLATE REDUCTASE COMPLEXED WITH FOLATE, REMARK 1 TITL 3 5-DEAZAFOLATE, AND 5,10-DIDEAZATETRAHYDROFOLATE: REMARK 1 TITL 4 MECHANISTIC IMPLICATIONS REMARK 1 REF BIOCHEMISTRY V. 34 2710 1995 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.BYSTROFF,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURE OF UNLIGANDED ESCHERICHIA COLI REMARK 1 TITL 2 DIHYDROFOLATE REDUCTASE. LIGAND-INDUCED REMARK 1 TITL 3 CONFORMATIONAL CHANGES AND COOPERATIVITY IN BINDING REMARK 1 REF BIOCHEMISTRY V. 30 2227 1991 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.F.DAVIES II,T.J.DELCAMP,N.J.PRENDERGAST, REMARK 1 AUTH 2 V.A.ASHFORD,J.H.FREISHEIM,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURES OF RECOMBINANT HUMAN REMARK 1 TITL 2 DIHYDROFOLATE REDUCTASE COMPLEXED WITH FOLATE AND REMARK 1 TITL 3 5-DEAZAFOLATE REMARK 1 REF BIOCHEMISTRY V. 29 9467 1990 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH C.BYSTROFF,S.J.OATLEY,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURES OF ESCHERICHIA COLI REMARK 1 TITL 2 DIHYDROFOLATE REDUCTASE: THE NADP+ HOLOENZYME AND REMARK 1 TITL 3 THE FOLATE.NADP+ TERNARY COMPLEX. SUBSTRATE REMARK 1 TITL 4 BINDING AND A MODEL FOR THE TRANSITION STATE REMARK 1 REF BIOCHEMISTRY V. 29 3263 1990 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 5 REMARK 1 AUTH D.J.FILMAN,J.T.BOLIN,D.A.MATTHEWS,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURES OF ESCHERICHIA COLI AND REMARK 1 TITL 2 LACTOBACILLUS CASEI DIHYDROFOLATE REDUCTASE REMARK 1 TITL 3 REFINED AT 1.7 A RESOLUTION. II. ENVIRONMENT OF REMARK 1 TITL 4 BOUND NADPH AND IMPLICATIONS FOR CATALYSIS REMARK 1 REF J.BIOL.CHEM. V. 257 13663 1982 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 6 REMARK 1 AUTH J.T.BOLIN,D.J.FILMAN,D.A.MATTHEWS,R.C.HAMLIN, REMARK 1 AUTH 2 J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURES OF ESCHERICHIA COLI AND REMARK 1 TITL 2 LACTOBACILLUS CASEI DIHYDROFOLATE REDUCTASE REMARK 1 TITL 3 REFINED AT 1.7 A RESOLUTION. I. GENERAL FEATURES REMARK 1 TITL 4 AND BINDING OF METHOTREXATE REMARK 1 REF J.BIOL.CHEM. V. 257 13650 1982 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1420 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2508 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 427 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.018 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.967 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JOL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.37733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.75467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.56600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.94333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.18867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 66 CB CG CD REMARK 470 THR A 68 OG1 CG2 REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 LYS A 106 CE NZ REMARK 470 GLU A 129 CD OE1 OE2 REMARK 470 ASP A 131 CG OD1 OD2 REMARK 470 ARG A 159 CD NE CZ NH1 NH2 REMARK 470 GLU B 129 CD OE1 OE2 REMARK 470 ASP B 131 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N PRO A 66 O HOH A 508 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 799 OG SER A 64 2665 1.14 REMARK 500 CB PRO A 130 O HOH A 462 6655 1.23 REMARK 500 O PHE B 140 O HOH A 610 2665 1.60 REMARK 500 O HOH B 786 CB SER B 64 5564 1.92 REMARK 500 O HOH B 817 O HOH B 818 5564 1.95 REMARK 500 O HOH B 789 OD2 ASP B 70 6655 1.96 REMARK 500 NE2 GLN B 65 O HOH B 786 6655 2.01 REMARK 500 O HOH B 799 CB SER A 64 2665 2.12 REMARK 500 O HOH B 768 O HOH A 601 5565 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 90 CD GLU A 90 OE2 0.074 REMARK 500 GLU A 118 CD GLU A 118 OE2 0.069 REMARK 500 GLU A 120 CD GLU A 120 OE2 0.078 REMARK 500 GLU A 134 CD GLU A 134 OE2 0.070 REMARK 500 GLU A 157 CD GLU A 157 OE2 0.067 REMARK 500 GLU B 17 CD GLU B 17 OE2 0.082 REMARK 500 GLU B 48 CD GLU B 48 OE2 0.082 REMARK 500 GLU B 80 CD GLU B 80 OE2 0.085 REMARK 500 GLU B 120 CD GLU B 120 OE2 0.067 REMARK 500 GLU B 134 CD GLU B 134 OE2 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CA - CB - CG ANGL. DEV. = -10.4 DEGREES REMARK 500 ARG A 12 CD - NE - CZ ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 69 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 69 CB - CG - OD2 ANGL. DEV. = -10.2 DEGREES REMARK 500 ASP A 79 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 TYR A 111 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 127 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 127 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 TYR A 128 CB - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 TYR A 128 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 158 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP B 27 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 27 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B 33 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ASP B 37 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 HIS B 45 CA - CB - CG ANGL. DEV. = -10.4 DEGREES REMARK 500 ARG B 52 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP B 69 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 79 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 79 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 87 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG B 98 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP B 116 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP B 122 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 122 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ASP B 127 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 127 CB - CG - OD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ASP B 132 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 132 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP B 144 CB - CG - OD1 ANGL. DEV. = 10.0 DEGREES REMARK 500 ASP B 144 CB - CG - OD2 ANGL. DEV. = -9.0 DEGREES REMARK 500 SER B 150 CB - CA - C ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG B 158 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 16 -53.12 -121.13 REMARK 500 GLU A 17 -55.65 -142.28 REMARK 500 THR A 68 -96.92 -58.35 REMARK 500 PRO A 130 -26.36 -13.30 REMARK 500 PHE A 137 131.61 -173.59 REMARK 500 ASN B 18 -168.29 -119.38 REMARK 500 ARG B 52 163.66 175.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 680 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH A 462 DISTANCE = 7.66 ANGSTROMS REMARK 525 HOH B 698 DISTANCE = 5.58 ANGSTROMS REMARK 525 HOH B 705 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH B 706 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 544 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH A 545 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A 550 DISTANCE = 7.78 ANGSTROMS REMARK 525 HOH A 565 DISTANCE = 8.45 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 FFO B 361 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 620 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 662 O REMARK 620 2 HOH B 661 O 143.0 REMARK 620 3 HOH B 677 O 167.1 46.0 REMARK 620 4 SER B 135 O 89.1 68.8 103.7 REMARK 620 5 HOH B 663 O 81.0 124.4 86.3 166.4 REMARK 620 6 HOH A 484 O 81.0 73.8 96.9 98.6 89.1 REMARK 620 7 HOH B 665 O 91.2 115.2 89.7 85.7 85.3 171.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 605 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 620 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FFO A 161 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FFO B 361 DBREF 1JOL A 1 159 UNP P0ABQ4 DYR_ECOLI 1 159 DBREF 1JOL B 1 159 UNP P0ABQ4 DYR_ECOLI 1 159 SEQADV 1JOL ASP A 37 UNP P0ABQ4 ASN 37 CONFLICT SEQADV 1JOL ASP B 37 UNP P0ABQ4 ASN 37 CONFLICT SEQRES 1 A 159 MET ILE SER LEU ILE ALA ALA LEU ALA VAL ASP ARG VAL SEQRES 2 A 159 ILE GLY MET GLU ASN ALA MET PRO TRP ASN LEU PRO ALA SEQRES 3 A 159 ASP LEU ALA TRP PHE LYS ARG ASN THR LEU ASP LYS PRO SEQRES 4 A 159 VAL ILE MET GLY ARG HIS THR TRP GLU SER ILE GLY ARG SEQRES 5 A 159 PRO LEU PRO GLY ARG LYS ASN ILE ILE LEU SER SER GLN SEQRES 6 A 159 PRO GLY THR ASP ASP ARG VAL THR TRP VAL LYS SER VAL SEQRES 7 A 159 ASP GLU ALA ILE ALA ALA CYS GLY ASP VAL PRO GLU ILE SEQRES 8 A 159 MET VAL ILE GLY GLY GLY ARG VAL TYR GLU GLN PHE LEU SEQRES 9 A 159 PRO LYS ALA GLN LYS LEU TYR LEU THR HIS ILE ASP ALA SEQRES 10 A 159 GLU VAL GLU GLY ASP THR HIS PHE PRO ASP TYR GLU PRO SEQRES 11 A 159 ASP ASP TRP GLU SER VAL PHE SER GLU PHE HIS ASP ALA SEQRES 12 A 159 ASP ALA GLN ASN SER HIS SER TYR CYS PHE GLU ILE LEU SEQRES 13 A 159 GLU ARG ARG SEQRES 1 B 159 MET ILE SER LEU ILE ALA ALA LEU ALA VAL ASP ARG VAL SEQRES 2 B 159 ILE GLY MET GLU ASN ALA MET PRO TRP ASN LEU PRO ALA SEQRES 3 B 159 ASP LEU ALA TRP PHE LYS ARG ASN THR LEU ASP LYS PRO SEQRES 4 B 159 VAL ILE MET GLY ARG HIS THR TRP GLU SER ILE GLY ARG SEQRES 5 B 159 PRO LEU PRO GLY ARG LYS ASN ILE ILE LEU SER SER GLN SEQRES 6 B 159 PRO GLY THR ASP ASP ARG VAL THR TRP VAL LYS SER VAL SEQRES 7 B 159 ASP GLU ALA ILE ALA ALA CYS GLY ASP VAL PRO GLU ILE SEQRES 8 B 159 MET VAL ILE GLY GLY GLY ARG VAL TYR GLU GLN PHE LEU SEQRES 9 B 159 PRO LYS ALA GLN LYS LEU TYR LEU THR HIS ILE ASP ALA SEQRES 10 B 159 GLU VAL GLU GLY ASP THR HIS PHE PRO ASP TYR GLU PRO SEQRES 11 B 159 ASP ASP TRP GLU SER VAL PHE SER GLU PHE HIS ASP ALA SEQRES 12 B 159 ASP ALA GLN ASN SER HIS SER TYR CYS PHE GLU ILE LEU SEQRES 13 B 159 GLU ARG ARG HET CL A 401 1 HET CL B 605 1 HET CA B 620 1 HET FFO A 161 34 HET FFO B 361 32 HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETNAM FFO 5-FORMYL-6-HYDROFOLIC ACID FORMUL 3 CL 2(CL 1-) FORMUL 5 CA CA 2+ FORMUL 6 FFO 2(C20 H21 N7 O7) FORMUL 8 HOH *427(H2 O) HELIX 1 1 VAL A 10 ARG A 12 5 3 HELIX 2 2 PRO A 25 THR A 35 1 11 HELIX 3 3 ARG A 44 ILE A 50 1 7 HELIX 4 4 VAL A 78 CYS A 85 1 8 HELIX 5 5 GLY A 97 LYS A 106 1 10 HELIX 6 6 PRO A 130 ASP A 132 5 3 HELIX 7 7 VAL B 10 ARG B 12 5 3 HELIX 8 8 PRO B 25 THR B 35 1 11 HELIX 9 9 ARG B 44 ILE B 50 1 7 HELIX 10 10 VAL B 78 CYS B 85 1 8 HELIX 11 11 GLY B 97 LYS B 106 1 10 SHEET 1 A 8 TRP A 133 HIS A 141 0 SHEET 2 A 8 TYR A 151 ARG A 158 -1 N GLU A 157 O GLU A 134 SHEET 3 A 8 LYS A 109 ILE A 115 -1 N HIS A 114 O CYS A 152 SHEET 4 A 8 ILE A 2 LEU A 8 1 N LEU A 4 O LYS A 109 SHEET 5 A 8 ILE A 91 GLY A 95 1 N ILE A 91 O SER A 3 SHEET 6 A 8 PRO A 39 GLY A 43 1 N ILE A 41 O MET A 92 SHEET 7 A 8 LYS A 58 LEU A 62 1 N LYS A 58 O VAL A 40 SHEET 8 A 8 THR A 73 VAL A 75 1 N THR A 73 O ILE A 61 SHEET 1 B 5 ILE B 91 VAL B 93 0 SHEET 2 B 5 ILE B 2 LEU B 8 1 N SER B 3 O ILE B 91 SHEET 3 B 5 LYS B 109 ILE B 115 1 N LYS B 109 O LEU B 4 SHEET 4 B 5 TYR B 151 ARG B 158 -1 N LEU B 156 O LEU B 110 SHEET 5 B 5 TRP B 133 HIS B 141 -1 N HIS B 141 O TYR B 151 SHEET 1 C 3 PRO B 39 GLY B 43 0 SHEET 2 C 3 LYS B 58 LEU B 62 1 N LYS B 58 O VAL B 40 SHEET 3 C 3 THR B 73 VAL B 75 1 N THR B 73 O ILE B 61 LINK CA CA B 620 O HOH B 662 1555 1555 2.43 LINK CA CA B 620 O HOH B 661 1555 1555 3.26 LINK CA CA B 620 O HOH B 677 1555 1555 2.38 LINK CA CA B 620 O SER B 135 1555 1555 2.24 LINK CA CA B 620 O HOH B 663 1555 2665 2.42 LINK CA CA B 620 O HOH A 484 1555 2665 2.42 LINK CA CA B 620 O HOH B 665 1555 2665 2.51 CISPEP 1 GLY A 95 GLY A 96 0 3.03 CISPEP 2 GLY B 95 GLY B 96 0 2.39 SITE 1 AC1 5 GLY A 43 HIS A 45 THR A 46 GLY A 96 SITE 2 AC1 5 HOH A 464 SITE 1 AC2 5 GLY B 43 HIS B 45 THR B 46 GLY B 96 SITE 2 AC2 5 HOH B 742 SITE 1 AC3 6 HOH A 484 SER B 135 HOH B 662 HOH B 663 SITE 2 AC3 6 HOH B 665 HOH B 677 SITE 1 AC4 19 ILE A 5 ALA A 6 ALA A 7 ASP A 27 SITE 2 AC4 19 LEU A 28 PHE A 31 LYS A 32 ARG A 52 SITE 3 AC4 19 ARG A 57 ILE A 94 TYR A 100 HOH A 403 SITE 4 AC4 19 HOH A 405 HOH A 468 HOH A 496 HOH A 524 SITE 5 AC4 19 HOH A 525 HOH A 551 HOH A 556 SITE 1 AC5 21 ILE B 5 ALA B 6 ALA B 7 ASP B 27 SITE 2 AC5 21 PHE B 31 LYS B 32 ILE B 50 ARG B 52 SITE 3 AC5 21 ARG B 57 ILE B 94 TYR B 100 THR B 113 SITE 4 AC5 21 HOH B 629 HOH B 648 HOH B 660 HOH B 692 SITE 5 AC5 21 HOH B 699 HOH B 717 HOH B 778 HOH B 795 SITE 6 AC5 21 HOH B 813 CRYST1 92.577 92.577 73.132 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010802 0.006236 0.000000 0.00000 SCALE2 0.000000 0.012473 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013674 0.00000