PDB Short entry for 1JU2 HEADER LYASE 23-AUG-01 1JU2 TITLE CRYSTAL STRUCTURE OF THE HYDROXYNITRILE LYASE FROM ALMOND COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYNITRILE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.1.2.10 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PRUNUS DULCIS; SOURCE 3 ORGANISM_COMMON: ALMOND; SOURCE 4 ORGANISM_TAXID: 3755 KEYWDS HYDROXYNITRILE LYASE, FLAVIN, GMC OXIDOREDUCTASE, ALMOND, KEYWDS 2 CYANOGENESIS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR I.DREVENY,K.GRUBER,A.GLIEDER,A.THOMPSON,C.KRATKY REVDAT 5 29-JUL-20 1JU2 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 13-JUL-11 1JU2 1 VERSN REVDAT 3 24-FEB-09 1JU2 1 VERSN REVDAT 2 01-APR-03 1JU2 1 JRNL REVDAT 1 04-SEP-02 1JU2 0 JRNL AUTH I.DREVENY,K.GRUBER,A.GLIEDER,A.THOMPSON,C.KRATKY JRNL TITL THE HYDROXYNITRILE LYASE FROM ALMOND: A LYASE THAT LOOKS JRNL TITL 2 LIKE AN OXIDOREDUCTASE. JRNL REF STRUCTURE V. 9 803 2001 JRNL REFN ISSN 0969-2126 JRNL PMID 11566130 JRNL DOI 10.1016/S0969-2126(01)00639-6 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1146498.200 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 69.2 REMARK 3 NUMBER OF REFLECTIONS : 123812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 12379 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 23.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6299 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 708 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7986 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 427 REMARK 3 SOLVENT ATOMS : 1516 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 1.25000 REMARK 3 B13 (A**2) : 0.95000 REMARK 3 B23 (A**2) : 0.10000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.14 REMARK 3 ESD FROM SIGMAA (A) : 0.08 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.850 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.010 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.470 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.790 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.640 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 45.06 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ISO.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : FAD.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ISO.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 5 : FAD.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1JU2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1000014185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-99 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 128976 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 23.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 68.3 REMARK 200 DATA REDUNDANCY : 2.450 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 30.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, ISOPROPANOL, NAHEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 522 REMARK 465 LYS A 523 REMARK 465 ILE A 524 REMARK 465 LEU A 525 REMARK 465 ASP A 526 REMARK 465 SER A 527 REMARK 465 LEU A 528 REMARK 465 LYS A 529 REMARK 465 SER A 530 REMARK 465 ALA A 531 REMARK 465 ALA A 532 REMARK 465 SER A 533 REMARK 465 LEU A 534 REMARK 465 VAL A 535 REMARK 465 LEU A 536 REMARK 465 LEU B 522 REMARK 465 LYS B 523 REMARK 465 ILE B 524 REMARK 465 LEU B 525 REMARK 465 ASP B 526 REMARK 465 SER B 527 REMARK 465 LEU B 528 REMARK 465 LYS B 529 REMARK 465 SER B 530 REMARK 465 ALA B 531 REMARK 465 ALA B 532 REMARK 465 SER B 533 REMARK 465 LEU B 534 REMARK 465 VAL B 535 REMARK 465 LEU B 536 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 250 -3.11 70.70 REMARK 500 LEU A 423 140.41 -33.51 REMARK 500 CYS A 464 58.61 -153.04 REMARK 500 ASP A 486 -164.46 179.91 REMARK 500 LYS B 250 -5.84 72.39 REMARK 500 SER B 377 -23.28 -141.19 REMARK 500 CYS B 464 60.82 -153.36 REMARK 500 LYS B 468 -51.92 -120.63 REMARK 500 ASP B 486 -163.10 -178.28 REMARK 500 REMARK 500 REMARK: NULL DBREF 1JU2 A 1 536 GB 15982976 AAL11514 28 563 DBREF 1JU2 B 1 536 GB 15982976 AAL11514 28 563 SEQRES 1 A 536 LEU ALA THR THR SER ASP HIS ASP PHE SER TYR LEU SER SEQRES 2 A 536 PHE ALA TYR ASP ALA THR ASP LEU GLU LEU GLU GLY SER SEQRES 3 A 536 TYR ASP TYR VAL ILE VAL GLY GLY GLY THR SER GLY CYS SEQRES 4 A 536 PRO LEU ALA ALA THR LEU SER GLU LYS TYR LYS VAL LEU SEQRES 5 A 536 VAL LEU GLU ARG GLY SER LEU PRO THR ALA TYR PRO ASN SEQRES 6 A 536 VAL LEU THR ALA ASP GLY PHE VAL TYR ASN LEU GLN GLN SEQRES 7 A 536 GLU ASP ASP GLY LYS THR PRO VAL GLU ARG PHE VAL SER SEQRES 8 A 536 GLU ASP GLY ILE ASP ASN VAL ARG GLY ARG VAL LEU GLY SEQRES 9 A 536 GLY THR SER ILE ILE ASN ALA GLY VAL TYR ALA ARG ALA SEQRES 10 A 536 ASN THR SER ILE TYR SER ALA SER GLY VAL ASP TRP ASP SEQRES 11 A 536 MET ASP LEU VAL ASN GLN THR TYR GLU TRP VAL GLU ASP SEQRES 12 A 536 THR ILE VAL TYR LYS PRO ASN SER GLN SER TRP GLN SER SEQRES 13 A 536 VAL THR LYS THR ALA PHE LEU GLU ALA GLY VAL HIS PRO SEQRES 14 A 536 ASN HIS GLY PHE SER LEU ASP HIS GLU GLU GLY THR ARG SEQRES 15 A 536 ILE THR GLY SER THR PHE ASP ASN LYS GLY THR ARG HIS SEQRES 16 A 536 ALA ALA ASP GLU LEU LEU ASN LYS GLY ASN SER ASN ASN SEQRES 17 A 536 LEU ARG VAL GLY VAL HIS ALA SER VAL GLU LYS ILE ILE SEQRES 18 A 536 PHE SER ASN ALA PRO GLY LEU THR ALA THR GLY VAL ILE SEQRES 19 A 536 TYR ARG ASP SER ASN GLY THR PRO HIS GLN ALA PHE VAL SEQRES 20 A 536 ARG SER LYS GLY GLU VAL ILE VAL SER ALA GLY THR ILE SEQRES 21 A 536 GLY THR PRO GLN LEU LEU LEU LEU SER GLY VAL GLY PRO SEQRES 22 A 536 GLU SER TYR LEU SER SER LEU ASN ILE PRO VAL VAL LEU SEQRES 23 A 536 SER HIS PRO TYR VAL GLY GLN PHE LEU HIS ASP ASN PRO SEQRES 24 A 536 ARG ASN PHE ILE ASN ILE LEU PRO PRO ASN PRO ILE GLU SEQRES 25 A 536 PRO THR ILE VAL THR VAL LEU GLY ILE SER ASN ASP PHE SEQRES 26 A 536 TYR GLN CYS SER PHE SER SER LEU PRO PHE THR THR PRO SEQRES 27 A 536 PRO PHE GLY PHE PHE PRO SER SER SER TYR PRO LEU PRO SEQRES 28 A 536 ASN SER THR PHE ALA HIS PHE ALA SER LYS VAL ALA GLY SEQRES 29 A 536 PRO LEU SER TYR GLY SER LEU THR LEU LYS SER SER SER SEQRES 30 A 536 ASN VAL ARG VAL SER PRO ASN VAL LYS PHE ASN TYR TYR SEQRES 31 A 536 SER ASN LEU THR ASP LEU SER HIS CYS VAL SER GLY MET SEQRES 32 A 536 LYS LYS ILE GLY GLU LEU LEU SER THR ASP ALA LEU LYS SEQRES 33 A 536 PRO TYR LYS VAL GLU ASP LEU PRO GLY VAL GLU GLY PHE SEQRES 34 A 536 ASN ILE LEU GLY ILE PRO LEU PRO LYS ASP GLN THR ASP SEQRES 35 A 536 ASP ALA ALA PHE GLU THR PHE CYS ARG GLU SER VAL ALA SEQRES 36 A 536 SER TYR TRP HIS TYR HIS GLY GLY CYS LEU VAL GLY LYS SEQRES 37 A 536 VAL LEU ASP GLY ASP PHE ARG VAL THR GLY ILE ASN ALA SEQRES 38 A 536 LEU ARG VAL VAL ASP GLY SER THR PHE PRO TYR THR PRO SEQRES 39 A 536 ALA SER HIS PRO GLN GLY PHE TYR LEU MET LEU GLY ARG SEQRES 40 A 536 TYR VAL GLY ILE LYS ILE LEU GLN GLU ARG SER ALA SER SEQRES 41 A 536 ASP LEU LYS ILE LEU ASP SER LEU LYS SER ALA ALA SER SEQRES 42 A 536 LEU VAL LEU SEQRES 1 B 536 LEU ALA THR THR SER ASP HIS ASP PHE SER TYR LEU SER SEQRES 2 B 536 PHE ALA TYR ASP ALA THR ASP LEU GLU LEU GLU GLY SER SEQRES 3 B 536 TYR ASP TYR VAL ILE VAL GLY GLY GLY THR SER GLY CYS SEQRES 4 B 536 PRO LEU ALA ALA THR LEU SER GLU LYS TYR LYS VAL LEU SEQRES 5 B 536 VAL LEU GLU ARG GLY SER LEU PRO THR ALA TYR PRO ASN SEQRES 6 B 536 VAL LEU THR ALA ASP GLY PHE VAL TYR ASN LEU GLN GLN SEQRES 7 B 536 GLU ASP ASP GLY LYS THR PRO VAL GLU ARG PHE VAL SER SEQRES 8 B 536 GLU ASP GLY ILE ASP ASN VAL ARG GLY ARG VAL LEU GLY SEQRES 9 B 536 GLY THR SER ILE ILE ASN ALA GLY VAL TYR ALA ARG ALA SEQRES 10 B 536 ASN THR SER ILE TYR SER ALA SER GLY VAL ASP TRP ASP SEQRES 11 B 536 MET ASP LEU VAL ASN GLN THR TYR GLU TRP VAL GLU ASP SEQRES 12 B 536 THR ILE VAL TYR LYS PRO ASN SER GLN SER TRP GLN SER SEQRES 13 B 536 VAL THR LYS THR ALA PHE LEU GLU ALA GLY VAL HIS PRO SEQRES 14 B 536 ASN HIS GLY PHE SER LEU ASP HIS GLU GLU GLY THR ARG SEQRES 15 B 536 ILE THR GLY SER THR PHE ASP ASN LYS GLY THR ARG HIS SEQRES 16 B 536 ALA ALA ASP GLU LEU LEU ASN LYS GLY ASN SER ASN ASN SEQRES 17 B 536 LEU ARG VAL GLY VAL HIS ALA SER VAL GLU LYS ILE ILE SEQRES 18 B 536 PHE SER ASN ALA PRO GLY LEU THR ALA THR GLY VAL ILE SEQRES 19 B 536 TYR ARG ASP SER ASN GLY THR PRO HIS GLN ALA PHE VAL SEQRES 20 B 536 ARG SER LYS GLY GLU VAL ILE VAL SER ALA GLY THR ILE SEQRES 21 B 536 GLY THR PRO GLN LEU LEU LEU LEU SER GLY VAL GLY PRO SEQRES 22 B 536 GLU SER TYR LEU SER SER LEU ASN ILE PRO VAL VAL LEU SEQRES 23 B 536 SER HIS PRO TYR VAL GLY GLN PHE LEU HIS ASP ASN PRO SEQRES 24 B 536 ARG ASN PHE ILE ASN ILE LEU PRO PRO ASN PRO ILE GLU SEQRES 25 B 536 PRO THR ILE VAL THR VAL LEU GLY ILE SER ASN ASP PHE SEQRES 26 B 536 TYR GLN CYS SER PHE SER SER LEU PRO PHE THR THR PRO SEQRES 27 B 536 PRO PHE GLY PHE PHE PRO SER SER SER TYR PRO LEU PRO SEQRES 28 B 536 ASN SER THR PHE ALA HIS PHE ALA SER LYS VAL ALA GLY SEQRES 29 B 536 PRO LEU SER TYR GLY SER LEU THR LEU LYS SER SER SER SEQRES 30 B 536 ASN VAL ARG VAL SER PRO ASN VAL LYS PHE ASN TYR TYR SEQRES 31 B 536 SER ASN LEU THR ASP LEU SER HIS CYS VAL SER GLY MET SEQRES 32 B 536 LYS LYS ILE GLY GLU LEU LEU SER THR ASP ALA LEU LYS SEQRES 33 B 536 PRO TYR LYS VAL GLU ASP LEU PRO GLY VAL GLU GLY PHE SEQRES 34 B 536 ASN ILE LEU GLY ILE PRO LEU PRO LYS ASP GLN THR ASP SEQRES 35 B 536 ASP ALA ALA PHE GLU THR PHE CYS ARG GLU SER VAL ALA SEQRES 36 B 536 SER TYR TRP HIS TYR HIS GLY GLY CYS LEU VAL GLY LYS SEQRES 37 B 536 VAL LEU ASP GLY ASP PHE ARG VAL THR GLY ILE ASN ALA SEQRES 38 B 536 LEU ARG VAL VAL ASP GLY SER THR PHE PRO TYR THR PRO SEQRES 39 B 536 ALA SER HIS PRO GLN GLY PHE TYR LEU MET LEU GLY ARG SEQRES 40 B 536 TYR VAL GLY ILE LYS ILE LEU GLN GLU ARG SER ALA SER SEQRES 41 B 536 ASP LEU LYS ILE LEU ASP SER LEU LYS SER ALA ALA SER SEQRES 42 B 536 LEU VAL LEU MODRES 1JU2 ASN A 118 ASN GLYCOSYLATION SITE MODRES 1JU2 ASN A 135 ASN GLYCOSYLATION SITE MODRES 1JU2 ASN A 352 ASN GLYCOSYLATION SITE MODRES 1JU2 ASN A 392 ASN GLYCOSYLATION SITE MODRES 1JU2 ASN B 135 ASN GLYCOSYLATION SITE MODRES 1JU2 ASN B 352 ASN GLYCOSYLATION SITE MODRES 1JU2 ASN B 392 ASN GLYCOSYLATION SITE MODRES 1JU2 ASN B 118 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NDG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET FUC D 5 10 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET BMA E 4 11 HET FUC E 5 10 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET BMA G 3 11 HET MAN G 4 11 HET FUC G 5 10 HET NAG H 1 14 HET NAG H 2 14 HET BMA H 3 11 HET FUC H 4 10 HET NAG A 607 14 HET FAD A2001 53 HET IPA A4001 4 HET NAG B 607 14 HET FAD B2002 53 HET IPA B4002 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 3 NAG 13(C8 H15 N O6) FORMUL 3 NDG C8 H15 N O6 FORMUL 4 BMA 5(C6 H12 O6) FORMUL 4 MAN 2(C6 H12 O6) FORMUL 4 FUC 4(C6 H12 O5) FORMUL 10 FAD 2(C27 H33 N9 O15 P2) FORMUL 11 IPA 2(C3 H8 O) FORMUL 15 HOH *1516(H2 O) HELIX 1 1 PHE A 9 SER A 13 5 5 HELIX 2 2 THR A 19 LEU A 21 5 3 HELIX 3 3 SER A 37 SER A 46 1 10 HELIX 4 4 LEU A 59 ASP A 70 5 12 HELIX 5 5 GLY A 71 GLN A 78 1 8 HELIX 6 6 GLY A 104 ILE A 109 5 6 HELIX 7 7 ASP A 130 VAL A 146 1 17 HELIX 8 8 GLN A 152 ALA A 165 1 14 HELIX 9 9 ALA A 196 GLY A 204 5 9 HELIX 10 10 ALA A 257 SER A 269 1 13 HELIX 11 11 PRO A 273 LEU A 280 1 8 HELIX 12 12 ASN A 392 SER A 411 1 20 HELIX 13 13 THR A 412 LYS A 419 5 8 HELIX 14 14 ASP A 442 VAL A 454 1 13 HELIX 15 15 ASP A 486 PHE A 490 5 5 HELIX 16 16 PRO A 498 ASP A 521 1 24 HELIX 17 17 PHE B 9 SER B 13 5 5 HELIX 18 18 THR B 19 LEU B 21 5 3 HELIX 19 19 SER B 37 SER B 46 1 10 HELIX 20 20 LEU B 59 ASP B 70 5 12 HELIX 21 21 GLY B 71 GLN B 78 1 8 HELIX 22 22 GLY B 104 ILE B 109 5 6 HELIX 23 23 ASP B 130 VAL B 146 1 17 HELIX 24 24 GLN B 152 ALA B 165 1 14 HELIX 25 25 ALA B 196 GLY B 204 5 9 HELIX 26 26 ALA B 257 SER B 269 1 13 HELIX 27 27 PRO B 273 LEU B 280 1 8 HELIX 28 28 ASN B 392 SER B 411 1 20 HELIX 29 29 LEU B 415 LYS B 419 5 5 HELIX 30 30 ASP B 442 VAL B 454 1 13 HELIX 31 31 PRO B 498 SER B 520 1 23 SHEET 1 A 9 ALA A 15 ASP A 17 0 SHEET 2 A 9 LEU A 209 VAL A 213 1 O VAL A 211 N TYR A 16 SHEET 3 A 9 VAL A 51 LEU A 54 1 O VAL A 51 N ARG A 210 SHEET 4 A 9 GLU A 24 VAL A 32 1 O TYR A 29 N LEU A 52 SHEET 5 A 9 PRO A 242 VAL A 255 1 O GLN A 244 N GLY A 25 SHEET 6 A 9 LEU A 482 VAL A 484 1 O ARG A 483 N VAL A 255 SHEET 7 A 9 PRO A 242 VAL A 255 1 O VAL A 253 N ARG A 483 SHEET 8 A 9 ALA A 230 ARG A 236 -1 O THR A 231 N VAL A 247 SHEET 9 A 9 SER A 216 PHE A 222 -1 N SER A 216 O ARG A 236 SHEET 1 B 2 VAL A 86 VAL A 90 0 SHEET 2 B 2 ASP A 96 GLY A 100 -1 N ASN A 97 O PHE A 89 SHEET 1 C 2 VAL A 113 TYR A 114 0 SHEET 2 C 2 GLY A 185 SER A 186 -1 O GLY A 185 N TYR A 114 SHEET 1 D 7 ASN A 170 PHE A 173 0 SHEET 2 D 7 GLY A 180 ILE A 183 1 O THR A 181 N HIS A 171 SHEET 3 D 7 VAL A 318 ILE A 321 -1 N LEU A 319 O ARG A 182 SHEET 4 D 7 PHE A 325 SER A 332 -1 O GLN A 327 N GLY A 320 SHEET 5 D 7 PHE A 355 VAL A 362 -1 O PHE A 355 N SER A 332 SHEET 6 D 7 PRO A 299 ILE A 305 -1 O PRO A 299 N VAL A 362 SHEET 7 D 7 ALA A 455 SER A 456 -1 O ALA A 455 N ARG A 300 SHEET 1 E 2 VAL A 271 GLY A 272 0 SHEET 2 E 2 LEU A 286 SER A 287 1 O LEU A 286 N GLY A 272 SHEET 1 F 4 HIS A 461 GLY A 462 0 SHEET 2 F 4 GLN A 293 HIS A 296 -1 N HIS A 296 O HIS A 461 SHEET 3 F 4 GLY A 369 THR A 372 -1 N GLY A 369 O LEU A 295 SHEET 4 F 4 ASN A 384 VAL A 385 -1 N ASN A 384 O THR A 372 SHEET 1 G 9 ALA B 15 ASP B 17 0 SHEET 2 G 9 LEU B 209 VAL B 213 1 O VAL B 211 N TYR B 16 SHEET 3 G 9 VAL B 51 LEU B 54 1 O VAL B 51 N ARG B 210 SHEET 4 G 9 GLU B 24 VAL B 32 1 O TYR B 29 N LEU B 52 SHEET 5 G 9 PRO B 242 VAL B 255 1 O GLN B 244 N GLY B 25 SHEET 6 G 9 LEU B 482 VAL B 484 1 O ARG B 483 N VAL B 255 SHEET 7 G 9 PRO B 242 VAL B 255 1 O VAL B 253 N ARG B 483 SHEET 8 G 9 LEU B 228 ARG B 236 -1 O THR B 231 N VAL B 247 SHEET 9 G 9 SER B 216 ASN B 224 -1 N SER B 216 O ARG B 236 SHEET 1 H 2 VAL B 86 VAL B 90 0 SHEET 2 H 2 ASP B 96 GLY B 100 -1 N ASN B 97 O PHE B 89 SHEET 1 I 2 VAL B 113 TYR B 114 0 SHEET 2 I 2 GLY B 185 SER B 186 -1 O GLY B 185 N TYR B 114 SHEET 1 J 9 ASN B 170 PHE B 173 0 SHEET 2 J 9 GLY B 180 ILE B 183 1 O THR B 181 N HIS B 171 SHEET 3 J 9 VAL B 318 ILE B 321 -1 N LEU B 319 O ARG B 182 SHEET 4 J 9 PHE B 325 SER B 332 -1 O GLN B 327 N GLY B 320 SHEET 5 J 9 PHE B 355 VAL B 362 -1 O PHE B 355 N SER B 332 SHEET 6 J 9 PRO B 299 ILE B 305 -1 O PRO B 299 N VAL B 362 SHEET 7 J 9 ILE B 431 LEU B 432 -1 N LEU B 432 O ASN B 304 SHEET 8 J 9 PRO B 299 ILE B 305 -1 O ASN B 304 N LEU B 432 SHEET 9 J 9 ALA B 455 SER B 456 -1 O ALA B 455 N ARG B 300 SHEET 1 K 2 VAL B 271 GLY B 272 0 SHEET 2 K 2 LEU B 286 SER B 287 1 O LEU B 286 N GLY B 272 SHEET 1 L 4 HIS B 461 GLY B 463 0 SHEET 2 L 4 GLN B 293 HIS B 296 -1 O GLN B 293 N GLY B 463 SHEET 3 L 4 GLY B 369 THR B 372 -1 N GLY B 369 O LEU B 295 SHEET 4 L 4 ASN B 384 LYS B 386 -1 N ASN B 384 O THR B 372 SSBOND 1 CYS A 399 CYS A 450 1555 1555 2.04 SSBOND 2 CYS B 399 CYS B 450 1555 1555 2.04 LINK ND2 ASN A 118 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 135 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 352 C1 NAG A 607 1555 1555 1.45 LINK ND2 ASN A 392 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN B 118 C1 NAG F 1 1555 1555 1.45 LINK ND2 ASN B 135 C1 NAG G 1 1555 1555 1.45 LINK ND2 ASN B 352 C1 NAG B 607 1555 1555 1.45 LINK ND2 ASN B 392 C1 NAG H 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NDG C 2 1555 1555 1.40 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.39 LINK O3 NAG D 1 C1 FUC D 5 1555 1555 1.40 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.39 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.40 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.38 LINK O3 NAG E 1 C1 FUC E 5 1555 1555 1.40 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.38 LINK O3 BMA E 3 C1 BMA E 4 1555 1555 1.40 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.39 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.39 LINK O3 NAG G 1 C1 FUC G 5 1555 1555 1.40 LINK O4 NAG G 2 C1 BMA G 3 1555 1555 1.39 LINK O6 BMA G 3 C1 MAN G 4 1555 1555 1.40 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.39 LINK O3 NAG H 1 C1 FUC H 4 1555 1555 1.40 LINK O4 NAG H 2 C1 BMA H 3 1555 1555 1.39 CISPEP 1 HIS A 168 PRO A 169 0 -0.16 CISPEP 2 ALA A 225 PRO A 226 0 -0.08 CISPEP 3 GLY A 364 PRO A 365 0 -0.21 CISPEP 4 HIS B 168 PRO B 169 0 0.27 CISPEP 5 ALA B 225 PRO B 226 0 -0.32 CISPEP 6 GLY B 364 PRO B 365 0 -0.16 CRYST1 56.176 67.494 79.796 79.57 77.78 67.19 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017801 -0.007485 -0.003051 0.00000 SCALE2 0.000000 0.016073 -0.001776 0.00000 SCALE3 0.000000 0.000000 0.012900 0.00000