PDB Short entry for 1JV9 HEADER BLOOD CLOTTING 28-AUG-01 1JV9 TITLE NMR STRUCTURE OF BPTI MUTANT G37A COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPSIN INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 ORGAN: PANCREAS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HB101; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTI103 KEYWDS BPTI, G37A MUTANT, CONFORMATIONAL STRAIN, MINIMIZED AVERAGE KEYWDS 2 STRUCTURE, BLOOD CLOTTING EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR J.L.BATTISTE,R.LI,C.WOODWARD REVDAT 4 27-OCT-21 1JV9 1 REMARK SEQADV REVDAT 3 24-FEB-09 1JV9 1 VERSN REVDAT 2 27-FEB-02 1JV9 1 JRNL REMARK REVDAT 1 12-SEP-01 1JV9 0 JRNL AUTH J.L.BATTISTE,R.LI,C.WOODWARD JRNL TITL A HIGHLY DESTABILIZING MUTATION, G37A, OF THE BOVINE JRNL TITL 2 PANCREATIC TRYPSIN INHIBITOR RETAINS THE AVERAGE NATIVE JRNL TITL 3 CONFORMATION BUT GREATLY INCREASES LOCAL FLEXIBILITY JRNL REF BIOCHEMISTRY V. 41 2237 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 11841215 JRNL DOI 10.1021/BI011693E REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.LI,J.L.BATTISTE,C.WOODWARD REMARK 1 TITL NATIVE-LIKE INTERACTIONS FAVORED IN THE UNFOLDED BOVINE REMARK 1 TITL 2 PANCREATIC TRYPSIN INHIBITOR HAVE DIFFERENT ROLES IN REMARK 1 TITL 3 FOLDING. REMARK 1 REF BIOCHEMISTRY V. 41 2246 2002 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI0116947 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1B, X-PLOR 3.851 REMARK 3 AUTHORS : VARIAN (VNMR), BRUNGER, A. T. (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 STANDARD STRUCTURE CALCULATION WITH DISTANCE/TORISON RESTRAINTS IN REMARK 3 XPLOR. REFINED USING CHEMICAL SHIFTS DIRECTLY IN THE TARGET REMARK 3 FUNCTION. REMARK 3 REMARK 3 926 TOTAL RESTRAINTS: REMARK 3 570 DISTANCE, REMARK 3 115 TORISON, REMARK 3 241 CHEMICAL SHIFT REMARK 4 REMARK 4 1JV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-01. REMARK 100 THE DEPOSITION ID IS D_1000014222. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 283 REMARK 210 PH : 4.6; 4.6 REMARK 210 IONIC STRENGTH : 30 MM ESTIMATED FROM PROTEIN REMARK 210 ALONE; 30 MM ESTIMATED FROM REMARK 210 PROTEIN ALONE REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 5 MM G37A BPTI, PH 4.6 WITH HCL; REMARK 210 5 MM G37A BPTI, PH 4.6 WITH DCL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.7, XEASY 1.2, X-PLOR REMARK 210 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 21 H PHE A 45 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 13 -117.32 -73.30 REMARK 500 CYS A 14 -179.93 52.34 REMARK 500 LEU A 29 -143.90 -138.30 REMARK 500 LYS A 41 -166.09 -117.01 REMARK 500 ASN A 43 54.23 -92.37 REMARK 500 ASN A 44 81.64 -159.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 1 0.27 SIDE CHAIN REMARK 500 ARG A 17 0.20 SIDE CHAIN REMARK 500 ARG A 20 0.21 SIDE CHAIN REMARK 500 ARG A 39 0.32 SIDE CHAIN REMARK 500 ARG A 42 0.28 SIDE CHAIN REMARK 500 ARG A 53 0.30 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JV8 RELATED DB: PDB REMARK 900 1JV8 IS THE ENSEMBLE OF STRUCTURES FROM WHICH MINIMIZED AVERAGE IS REMARK 900 CALCULATED DBREF 1JV9 A 1 58 UNP P00974 BPT1_BOVIN 1 58 SEQADV 1JV9 ALA A 37 UNP P00974 GLY 37 ENGINEERED MUTATION SEQRES 1 A 58 ARG PRO ASP PHE CYS LEU GLU PRO PRO TYR THR GLY PRO SEQRES 2 A 58 CYS LYS ALA ARG ILE ILE ARG TYR PHE TYR ASN ALA LYS SEQRES 3 A 58 ALA GLY LEU CYS GLN THR PHE VAL TYR GLY ALA CYS ARG SEQRES 4 A 58 ALA LYS ARG ASN ASN PHE LYS SER ALA GLU ASP CYS MET SEQRES 5 A 58 ARG THR CYS GLY GLY ALA HELIX 1 1 SER A 47 GLY A 56 1 10 SHEET 1 A 2 ILE A 18 TYR A 23 0 SHEET 2 A 2 CYS A 30 TYR A 35 -1 O GLN A 31 N PHE A 22 SSBOND 1 CYS A 5 CYS A 55 1555 1555 2.02 SSBOND 2 CYS A 14 CYS A 38 1555 1555 2.02 SSBOND 3 CYS A 30 CYS A 51 1555 1555 2.02 CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000