PDB Short entry for 1K0X HEADER HORMONE/GROWTH FACTOR 21-SEP-01 1K0X TITLE SOLUTION STRUCTURE OF MELANOMA INHIBITORY ACTIVITY PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MELANOMA DERIVED GROWTH REGULATORY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MELANOMA INHIBITORY ACTIVITY; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SH3 SUBDOMAIN, HORMONE-GROWTH FACTOR COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.C.LOUGHEED,P.J.DOMAILLE,T.M.HANDEL REVDAT 3 23-FEB-22 1K0X 1 REMARK REVDAT 2 24-FEB-09 1K0X 1 VERSN REVDAT 1 24-JUL-02 1K0X 0 JRNL AUTH J.C.LOUGHEED,P.J.DOMAILLE,T.M.HANDEL JRNL TITL SOLUTION STRUCTURE AND DYNAMICS OF MELANOMA INHIBITORY JRNL TITL 2 ACTIVITY PROTEIN. JRNL REF J.BIOMOL.NMR V. 22 211 2002 JRNL REFN ISSN 0925-2738 JRNL PMID 11991352 JRNL DOI 10.1023/A:1014961408029 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1K0X COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-01. REMARK 100 THE DEPOSITION ID IS D_1000014421. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.3 REMARK 210 IONIC STRENGTH : 20 MM SODIUM ACETATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : UNIFORM LABELING WITH 15N; REMARK 210 UNIFORM LABELING WITH 13C AND REMARK 210 15N; UNIFORM LABELING WITH 13C REMARK 210 AND 15N; UNIFORM LABELING WITH REMARK 210 13C AND 15N REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; REMARK 210 4D_13C/15N-SEPARATED_NOESY; 3D_ REMARK 210 13C-SEPARATED_NOESY; 4D_13C- REMARK 210 SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY(CENTERED ON REMARK 210 AROMATIC CARBONS); HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.851, ANSIG 3.3, AZARA REMARK 210 2.0 REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS REMARK 210 -SIMULATED ANNEALING COUPLED REMARK 210 WITH THE AMBIGUOUS RESTRAINTS REMARK 210 FOR ITERATIVE ASSIGNMENT (ARIA) REMARK 210 EXTENSION OF NILGES (M. NILGES, REMARK 210 J. MOL. BIOL. 245, 645-660, 1995) REMARK 210 . REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 69 -70.09 -121.47 REMARK 500 1 TYR A 70 44.98 35.25 REMARK 500 1 ASP A 72 -91.29 -131.70 REMARK 500 1 LEU A 73 -78.27 64.93 REMARK 500 1 ALA A 75 -17.26 -165.67 REMARK 500 1 LEU A 77 176.47 60.10 REMARK 500 1 ASP A 101 -167.77 -121.72 REMARK 500 2 PRO A 5 151.19 -49.26 REMARK 500 2 ARG A 56 -64.66 71.17 REMARK 500 2 TYR A 69 74.84 -119.54 REMARK 500 2 TYR A 70 12.72 -147.23 REMARK 500 2 LEU A 73 -86.02 62.31 REMARK 500 2 ALA A 75 -40.15 -152.89 REMARK 500 2 LEU A 77 169.33 61.73 REMARK 500 2 ASP A 88 -41.92 -147.95 REMARK 500 2 LYS A 92 130.90 -171.28 REMARK 500 2 LYS A 95 33.30 -142.97 REMARK 500 3 TYR A 70 -129.38 -82.53 REMARK 500 3 ALA A 74 -14.69 175.08 REMARK 500 3 ASP A 101 -122.03 -101.57 REMARK 500 4 LEU A 7 -37.96 73.09 REMARK 500 4 TYR A 69 -97.78 -136.64 REMARK 500 4 ASP A 72 113.97 -39.16 REMARK 500 4 LEU A 73 -39.32 -146.96 REMARK 500 4 LEU A 77 -179.90 57.79 REMARK 500 4 ASP A 88 -30.69 -153.64 REMARK 500 5 ARG A 56 25.02 43.88 REMARK 500 5 ARG A 58 -74.89 52.05 REMARK 500 5 GLN A 66 -93.94 -79.07 REMARK 500 5 TYR A 69 93.09 58.44 REMARK 500 5 ASP A 72 -40.53 -165.33 REMARK 500 5 ARG A 76 82.58 37.34 REMARK 500 6 ALA A 8 -162.92 -115.32 REMARK 500 6 LEU A 73 -34.61 -153.62 REMARK 500 6 ASP A 101 -112.41 -102.29 REMARK 500 6 CYS A 107 52.89 -105.13 REMARK 500 7 LEU A 7 5.31 56.39 REMARK 500 7 ASP A 9 -53.04 -139.44 REMARK 500 7 GLN A 66 76.73 -106.16 REMARK 500 7 ASP A 68 74.76 62.95 REMARK 500 7 LEU A 73 -50.17 -150.73 REMARK 500 7 ALA A 75 -30.94 -154.68 REMARK 500 7 LEU A 77 139.91 63.90 REMARK 500 7 PHE A 105 58.92 -148.61 REMARK 500 8 ASP A 9 -52.17 -121.40 REMARK 500 8 GLN A 66 135.30 -31.09 REMARK 500 8 TYR A 69 75.91 55.62 REMARK 500 8 ASP A 72 35.29 -148.29 REMARK 500 8 LEU A 73 -73.09 -79.51 REMARK 500 8 ALA A 75 -43.24 -146.46 REMARK 500 REMARK 500 THIS ENTRY HAS 115 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1I1J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MELANOMA INHIBITORY ACTIVITY PROTEIN REMARK 900 RELATED ID: 1HJD RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF MELANOMA INHIBITORY ACTIVITY PROTEIN REMARK 999 REMARK 999 THE AUTHOR STATES THAT AN EXTRA MET IS AT THE REMARK 999 N-TERMINUS OF THE SEQUENCE THAT IS NOT PRESENT REMARK 999 IN THE NATIVE PROTEIN DUE TO E. COLI EXPRESSION. REMARK 999 THE RESIDUE NUMBERING IN THIS STRUCTURE IS +1 REMARK 999 RELATIVE TO 1I1J. DBREF 1K0X A 2 108 UNP Q16674 MIA_HUMAN 25 131 SEQADV 1K0X MET A 1 UNP Q16674 SEE REMARK 999 SEQRES 1 A 108 MET GLY PRO MET PRO LYS LEU ALA ASP ARG LYS LEU CYS SEQRES 2 A 108 ALA ASP GLN GLU CYS SER HIS PRO ILE SER MET ALA VAL SEQRES 3 A 108 ALA LEU GLN ASP TYR MET ALA PRO ASP CYS ARG PHE LEU SEQRES 4 A 108 THR ILE HIS ARG GLY GLN VAL VAL TYR VAL PHE SER LYS SEQRES 5 A 108 LEU LYS GLY ARG GLY ARG LEU PHE TRP GLY GLY SER VAL SEQRES 6 A 108 GLN GLY ASP TYR TYR GLY ASP LEU ALA ALA ARG LEU GLY SEQRES 7 A 108 TYR PHE PRO SER SER ILE VAL ARG GLU ASP GLN THR LEU SEQRES 8 A 108 LYS PRO GLY LYS VAL ASP VAL LYS THR ASP LYS TRP ASP SEQRES 9 A 108 PHE TYR CYS GLN SHEET 1 A 2 ARG A 10 CYS A 13 0 SHEET 2 A 2 VAL A 96 LYS A 99 -1 O VAL A 98 N LYS A 11 SHEET 1 B 5 GLY A 78 PRO A 81 0 SHEET 2 B 5 PHE A 60 GLN A 66 -1 N TRP A 61 O PHE A 80 SHEET 3 B 5 VAL A 46 LYS A 52 -1 N TYR A 48 O SER A 64 SHEET 4 B 5 SER A 23 ALA A 27 -1 N SER A 23 O VAL A 49 SHEET 5 B 5 VAL A 85 THR A 90 -1 O GLN A 89 N MET A 24 SSBOND 1 CYS A 13 CYS A 18 1555 1555 2.03 SSBOND 2 CYS A 36 CYS A 107 1555 1555 2.03 CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000