PDB Short entry for 1KFT HEADER DNA BINDING PROTEIN 23-NOV-01 1KFT TITLE SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF UVRC FROM E-COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXCINUCLEASE ABC SUBUNIT C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HHH DOMAIN(C-TERMINAL DOMAIN); COMPND 5 SYNONYM: UVRC; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: DE3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3)-P-LYS-S; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET13B KEYWDS HELIX-HAIRPIN-HELIX, HHH DOMAIN, DNA-BINDING DOMAIN, DNA BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 22 AUTHOR S.SINGH,G.E.FOLKERS,A.M.J.J.BONVIN,R.BOELENS,R.WECHSELBERGER, AUTHOR 2 A.NIZTAYEV,R.KAPTEIN REVDAT 3 23-FEB-22 1KFT 1 REMARK SEQADV REVDAT 2 24-FEB-09 1KFT 1 VERSN REVDAT 1 20-NOV-02 1KFT 0 JRNL AUTH S.SINGH,G.E.FOLKERS,A.M.J.J.BONVIN,R.BOELENS, JRNL AUTH 2 R.WECHSELBERGER,A.NIZTAYEV,R.KAPTEIN JRNL TITL SOLUTION STRUCTURE AND DNA-BINDING PROPERTIES OF THE JRNL TITL 2 C-TERMINAL DOMAIN OF UVRC FROM E.COLI JRNL REF EMBO J. V. 21 6257 2002 JRNL REFN ISSN 0261-4189 JRNL PMID 12426397 JRNL DOI 10.1093/EMBOJ/CDF627 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE VERSION 1.8, CNS 1.0 REMARK 3 AUTHORS : DELAGLIO, F., GRZESIEK, S., VUISTER, G., ZHU, G., REMARK 3 PFEIFER, J., AND BAX, A. (NMRPIPE), A.T.BRUNGER, REMARK 3 P.D.ADAMS, G.M.CLORE, W.L.DELANO,P.GROS, REMARK 3 R.W.GROSSE-KUNSTLEVE, J.-S.JIANG,J.KUSZEWSKI, REMARK 3 M.NILGES, N.S.PANNU, R.J.READ, L.M.RICE, REMARK 3 T.SIMONSON, G.L.WARREN. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CALCULATION WAS DONE ON THE BASIS OF REMARK 3 1326 UNAMBIGUOUS AND 60 AMBIGUOUS DISTANCE RESTRAINTS WITH THE REMARK 3 INCLUSION OF 68 DIHEDRAL ANGLE CONSTRAINTS. REMARK 4 REMARK 4 1KFT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-01. REMARK 100 THE DEPOSITION ID IS D_1000014910. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 300 REMARK 210 PH : 6.8; 6.8 REMARK 210 IONIC STRENGTH : 300MM NACL, 50MM PHOSPHATE REMARK 210 BUFFER; 300MM NACL, 50MM REMARK 210 PHOSPHATE BUFFER REMARK 210 PRESSURE : ATMOSPHERIC ATM; ATMOSPHERIC ATM REMARK 210 SAMPLE CONTENTS : 1MM UVRC-CTD 15N LABELLED 300MM REMARK 210 NACL, 50MM PHOSPHATE BUFFER REMARK 210 0.2MM COMPLETE PROTEASE REMARK 210 INHIBITOR 95% H2O, 5% D2O, PH REMARK 210 6.8; 1MM UVRC-CTD 15N 13C REMARK 210 DOUBLLY LABELLED 300MM NACL, REMARK 210 50MM PHOSPHATE BUFFER 0.2MM REMARK 210 COMPLETE PROTEASE INHIBITOR 95% REMARK 210 H2O, 5% D2O, PH 6.8 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AMX; DRX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 4.1.3, ARIA 1.0, CNS 1.0 REMARK 210 METHOD USED : A SIMULATED ANNEALING PROTOCOL REMARK 210 IN CARTESIAN SPACE WAS USED. REMARK 210 FINAL REFINEMENT WAS DONE WITH REMARK 210 EXPLICIT WATER. REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 22 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO NOE DISTANCE VIOLATIONS > REMARK 210 0.5A AND LOWEST ENERGIES AFTER REMARK 210 REFINING THE BEST 50 OF THE REMARK 210 INITIAL 200 IN EXPLICIT WATER REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 5 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-22 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 ASN A 22 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 25 39.05 -72.98 REMARK 500 1 ILE A 29 166.15 -49.20 REMARK 500 1 GLU A 30 9.51 -58.09 REMARK 500 1 LYS A 35 -18.27 -175.17 REMARK 500 1 ALA A 59 31.48 -74.84 REMARK 500 1 ILE A 64 83.92 -59.02 REMARK 500 1 GLN A 66 -52.16 -136.17 REMARK 500 2 SER A 24 161.12 -41.25 REMARK 500 2 GLU A 30 36.73 22.05 REMARK 500 2 PRO A 34 -71.58 -53.86 REMARK 500 2 LYS A 35 -11.36 -150.59 REMARK 500 2 ALA A 59 33.47 -75.63 REMARK 500 2 PRO A 62 107.41 -50.01 REMARK 500 2 ILE A 64 84.10 -67.89 REMARK 500 2 SER A 65 -60.54 -109.24 REMARK 500 2 GLN A 66 -55.11 -134.31 REMARK 500 2 LEU A 76 -63.93 -144.69 REMARK 500 3 GLU A 30 75.42 -53.09 REMARK 500 3 PRO A 34 -76.07 -56.47 REMARK 500 3 LYS A 35 -24.87 -140.85 REMARK 500 3 PRO A 62 106.54 -41.40 REMARK 500 3 ILE A 64 82.78 -64.41 REMARK 500 3 GLN A 66 -56.07 175.86 REMARK 500 3 LEU A 76 -35.65 -135.02 REMARK 500 3 LYS A 77 -98.43 -66.14 REMARK 500 4 SER A 25 9.19 -152.64 REMARK 500 4 ILE A 29 81.81 -59.85 REMARK 500 4 PRO A 34 -78.70 -69.08 REMARK 500 4 LYS A 35 -6.28 -148.03 REMARK 500 4 ALA A 59 34.41 -79.62 REMARK 500 4 ILE A 64 82.67 -59.66 REMARK 500 4 GLN A 66 -56.31 -166.25 REMARK 500 4 LEU A 76 -84.93 -125.90 REMARK 500 4 LYS A 77 -77.98 -122.02 REMARK 500 5 SER A 25 22.52 -154.12 REMARK 500 5 ILE A 29 156.65 -49.41 REMARK 500 5 GLU A 30 83.22 -49.74 REMARK 500 5 LYS A 35 -19.72 -170.87 REMARK 500 5 ALA A 59 32.31 -75.60 REMARK 500 5 PRO A 62 -146.15 -46.13 REMARK 500 5 ILE A 64 83.94 -57.99 REMARK 500 5 SER A 65 -62.92 -120.35 REMARK 500 5 GLN A 66 -55.35 -127.55 REMARK 500 5 SER A 75 -74.77 -71.53 REMARK 500 5 LEU A 76 -70.46 -62.66 REMARK 500 5 LYS A 77 -87.18 -141.68 REMARK 500 6 SER A 24 147.86 -37.41 REMARK 500 6 SER A 25 -2.31 -59.15 REMARK 500 6 LEU A 26 -16.65 -45.86 REMARK 500 6 THR A 28 -28.93 -165.45 REMARK 500 REMARK 500 THIS ENTRY HAS 215 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1KFT A 22 78 UNP P07028 UVRC_ECOLI 554 610 SEQADV 1KFT MET A 1 UNP P07028 EXPRESSION TAG SEQADV 1KFT GLY A 2 UNP P07028 EXPRESSION TAG SEQADV 1KFT SER A 3 UNP P07028 EXPRESSION TAG SEQADV 1KFT SER A 4 UNP P07028 EXPRESSION TAG SEQADV 1KFT HIS A 5 UNP P07028 EXPRESSION TAG SEQADV 1KFT HIS A 6 UNP P07028 EXPRESSION TAG SEQADV 1KFT HIS A 7 UNP P07028 EXPRESSION TAG SEQADV 1KFT HIS A 8 UNP P07028 EXPRESSION TAG SEQADV 1KFT HIS A 9 UNP P07028 EXPRESSION TAG SEQADV 1KFT HIS A 10 UNP P07028 EXPRESSION TAG SEQADV 1KFT SER A 11 UNP P07028 EXPRESSION TAG SEQADV 1KFT SER A 12 UNP P07028 EXPRESSION TAG SEQADV 1KFT GLY A 13 UNP P07028 EXPRESSION TAG SEQADV 1KFT LEU A 14 UNP P07028 EXPRESSION TAG SEQADV 1KFT VAL A 15 UNP P07028 EXPRESSION TAG SEQADV 1KFT PRO A 16 UNP P07028 EXPRESSION TAG SEQADV 1KFT ARG A 17 UNP P07028 EXPRESSION TAG SEQADV 1KFT GLY A 18 UNP P07028 EXPRESSION TAG SEQADV 1KFT SER A 19 UNP P07028 EXPRESSION TAG SEQADV 1KFT HIS A 20 UNP P07028 EXPRESSION TAG SEQADV 1KFT MET A 21 UNP P07028 EXPRESSION TAG SEQRES 1 A 78 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 78 LEU VAL PRO ARG GLY SER HIS MET ASN THR SER SER LEU SEQRES 3 A 78 GLU THR ILE GLU GLY VAL GLY PRO LYS ARG ARG GLN MET SEQRES 4 A 78 LEU LEU LYS TYR MET GLY GLY LEU GLN GLY LEU ARG ASN SEQRES 5 A 78 ALA SER VAL GLU GLU ILE ALA LYS VAL PRO GLY ILE SER SEQRES 6 A 78 GLN GLY LEU ALA GLU LYS ILE PHE TRP SER LEU LYS HIS HELIX 1 1 SER A 24 ILE A 29 5 6 HELIX 2 2 LYS A 35 GLY A 45 1 11 HELIX 3 3 GLY A 46 ALA A 53 1 8 HELIX 4 4 SER A 54 ALA A 59 1 6 HELIX 5 5 GLN A 66 LYS A 77 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000