PDB Short entry for 1KGS HEADER DNA BINDING PROTEIN 28-NOV-01 1KGS TITLE CRYSTAL STRUCTURE AT 1.50 A OF AN OMPR/PHOB HOMOLOG FROM THERMOTOGA TITLE 2 MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA BINDING RESPONSE REGULATOR D; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DRRD; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: DRRD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDRRD KEYWDS DNA-BINDING PROTEIN, ALPH-BETA SANDWICH, WINGED-HELIX, HELIX-TURN- KEYWDS 2 HELIX, RESPONSE REGULATOR, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.R.BUCKLER,Y.ZHOU,A.M.STOCK REVDAT 4 13-JUL-11 1KGS 1 VERSN REVDAT 3 24-FEB-09 1KGS 1 VERSN REVDAT 2 27-FEB-02 1KGS 1 JRNL REMARK REVDAT 1 05-DEC-01 1KGS 0 JRNL AUTH D.R.BUCKLER,Y.ZHOU,A.M.STOCK JRNL TITL EVIDENCE OF INTRADOMAIN AND INTERDOMAIN FLEXIBILITY IN AN JRNL TITL 2 OMPR/PHOB HOMOLOG FROM THERMOTOGA MARITIMA. JRNL REF STRUCTURE V. 10 153 2002 JRNL REFN ISSN 0969-2126 JRNL PMID 11839301 JRNL DOI 10.1016/S0969-2126(01)00706-7 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 40466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2026 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2816 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1774 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 14.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : 0.33000 REMARK 3 B33 (A**2) : -0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.612 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1758 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1674 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2360 ; 1.650 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3866 ; 1.834 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 213 ; 4.546 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 339 ;12.756 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 278 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1889 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 339 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 355 ; 0.232 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1553 ; 0.194 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1 ; 0.197 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 164 ; 0.145 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 4 ; 0.037 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.300 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 57 ; 0.265 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.142 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1084 ; 1.030 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1739 ; 1.771 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 674 ; 2.945 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 621 ; 4.526 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2920 28.9020 44.6080 REMARK 3 T TENSOR REMARK 3 T11: 0.0014 T22: 0.0088 REMARK 3 T33: 0.0181 T12: 0.0034 REMARK 3 T13: -0.0021 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.4011 L22: 0.4675 REMARK 3 L33: 0.6133 L12: -0.0044 REMARK 3 L13: 0.0056 L23: -0.1871 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: 0.0105 S13: -0.0190 REMARK 3 S21: -0.0250 S22: 0.0140 S23: 0.0123 REMARK 3 S31: 0.0133 S32: -0.0094 S33: -0.0050 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2670 40.3510 76.1670 REMARK 3 T TENSOR REMARK 3 T11: 0.0277 T22: 0.0283 REMARK 3 T33: 0.0285 T12: 0.0000 REMARK 3 T13: 0.0010 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.2711 L22: 0.1670 REMARK 3 L33: 0.8994 L12: -0.0423 REMARK 3 L13: 0.1121 L23: -0.0784 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: -0.0078 S13: 0.0143 REMARK 3 S21: 0.0071 S22: -0.0112 S23: 0.0062 REMARK 3 S31: -0.0220 S32: -0.0005 S33: 0.0016 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 MAXIMUM LIKELIHOOD TARGET AND EXPERIMENTAL REMARK 3 PHASES AS HENDRICKSON-LATTMAN COEFFICIENTS REMARK 3 USED THROUGHOUT REFINEMENT. TLS REFINEMENT REMARK 3 PERFORMED FOR LAST STAGES WHERE REMARK 3 EACH SUBDOMAIN DEFINED AS SEPARATE GROUP. REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 1KGS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-01. REMARK 100 THE RCSB ID CODE IS RCSB014941. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9640, 0.9796, 0.9797 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL REMARK 200 OPTICS : PARABOLIC COLLIMATING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40466 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : 0.05200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.13900 REMARK 200 R SYM FOR SHELL (I) : 0.13900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 12-25 MG/ML IN 0.0125 M REMARK 280 TRIS(HYDROXYMETHYL)AMINO METHANE (TRIS) PH 8.0, 0.50 M NACL; REMARK 280 PRECIPITATING SOLUTION: 20% (W/V) PEG 3350, 0.10 M 2-(N- REMARK 280 MORPHOLINO)ETHANESULFONIC ACID (MES) PH 6.5, 0.20 M POTASSIUM REMARK 280 THIOCYANATE (KSCN), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.63350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 182 REMARK 465 PHE A 183 REMARK 465 ASP A 184 REMARK 465 ASP A 185 REMARK 465 GLU A 186 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER A 124 REMARK 475 LYS A 125 REMARK 475 VAL A 187 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 2 CG OD1 ND2 REMARK 480 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 121 CG CD CE NZ REMARK 480 GLU A 123 CB CG CD OE1 OE2 REMARK 480 SER A 126 CB OG REMARK 480 LYS A 148 CD CE NZ REMARK 480 LYS A 173 CG CD CE NZ REMARK 480 GLU A 178 CG CD OE1 OE2 REMARK 480 SER A 189 CB OG REMARK 480 LYS A 201 CD CE NZ REMARK 480 LYS A 205 CD CE NZ REMARK 480 LYS A 208 CG CD CE NZ REMARK 480 LYS A 209 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 189 O HOH A 463 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 26 SE MSE A 26 CE -0.363 REMARK 500 SER A 124 CA SER A 124 CB 1.315 REMARK 500 LYS A 125 CA LYS A 125 CB 0.490 REMARK 500 SER A 126 CA SER A 126 CB -0.093 REMARK 500 GLU A 178 CB GLU A 178 CG -0.248 REMARK 500 LYS A 205 CG LYS A 205 CD -0.508 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 48 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 89 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 SER A 124 CB - CA - C ANGL. DEV. = -34.3 DEGREES REMARK 500 SER A 124 N - CA - CB ANGL. DEV. = -24.3 DEGREES REMARK 500 SER A 124 CA - CB - OG ANGL. DEV. = 17.6 DEGREES REMARK 500 LYS A 125 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 LYS A 125 CA - CB - CG ANGL. DEV. = 23.8 DEGREES REMARK 500 SER A 126 CB - CA - C ANGL. DEV. = 14.9 DEGREES REMARK 500 GLU A 178 CA - CB - CG ANGL. DEV. = 21.2 DEGREES REMARK 500 LYS A 205 CB - CG - CD ANGL. DEV. = 24.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 58 -62.09 75.38 REMARK 500 SER A 124 111.88 -23.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LYS A 125 17.6 L L OUTSIDE RANGE REMARK 500 SER A 126 15.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 306 DBREF 1KGS A 1 225 UNP Q9WYN0 Q9WYN0_THEMA 1 225 SEQADV 1KGS MSE A 1 UNP Q9WYN0 MET 1 MODIFIED RESIDUE SEQADV 1KGS MSE A 26 UNP Q9WYN0 MET 26 MODIFIED RESIDUE SEQADV 1KGS MSE A 39 UNP Q9WYN0 MET 39 MODIFIED RESIDUE SEQADV 1KGS MSE A 41 UNP Q9WYN0 MET 41 MODIFIED RESIDUE SEQADV 1KGS MSE A 55 UNP Q9WYN0 MET 55 MODIFIED RESIDUE SEQADV 1KGS MSE A 68 UNP Q9WYN0 MET 68 MODIFIED RESIDUE SEQADV 1KGS MSE A 79 UNP Q9WYN0 MET 79 MODIFIED RESIDUE SEQADV 1KGS MSE A 95 UNP Q9WYN0 MET 95 MODIFIED RESIDUE SEQADV 1KGS MSE A 165 UNP Q9WYN0 MET 165 MODIFIED RESIDUE SEQRES 1 A 225 MSE ASN VAL ARG VAL LEU VAL VAL GLU ASP GLU ARG ASP SEQRES 2 A 225 LEU ALA ASP LEU ILE THR GLU ALA LEU LYS LYS GLU MSE SEQRES 3 A 225 PHE THR VAL ASP VAL CYS TYR ASP GLY GLU GLU GLY MSE SEQRES 4 A 225 TYR MSE ALA LEU ASN GLU PRO PHE ASP VAL VAL ILE LEU SEQRES 5 A 225 ASP ILE MSE LEU PRO VAL HIS ASP GLY TRP GLU ILE LEU SEQRES 6 A 225 LYS SER MSE ARG GLU SER GLY VAL ASN THR PRO VAL LEU SEQRES 7 A 225 MSE LEU THR ALA LEU SER ASP VAL GLU TYR ARG VAL LYS SEQRES 8 A 225 GLY LEU ASN MSE GLY ALA ASP ASP TYR LEU PRO LYS PRO SEQRES 9 A 225 PHE ASP LEU ARG GLU LEU ILE ALA ARG VAL ARG ALA LEU SEQRES 10 A 225 ILE ARG ARG LYS SER GLU SER LYS SER THR LYS LEU VAL SEQRES 11 A 225 CYS GLY ASP LEU ILE LEU ASP THR ALA THR LYS LYS ALA SEQRES 12 A 225 TYR ARG GLY SER LYS GLU ILE ASP LEU THR LYS LYS GLU SEQRES 13 A 225 TYR GLN ILE LEU GLU TYR LEU VAL MSE ASN LYS ASN ARG SEQRES 14 A 225 VAL VAL THR LYS GLU GLU LEU GLN GLU HIS LEU TRP SER SEQRES 15 A 225 PHE ASP ASP GLU VAL PHE SER ASP VAL LEU ARG SER HIS SEQRES 16 A 225 ILE LYS ASN LEU ARG LYS LYS VAL ASP LYS GLY PHE LYS SEQRES 17 A 225 LYS LYS ILE ILE HIS THR VAL ARG GLY ILE GLY TYR VAL SEQRES 18 A 225 ALA ARG ASP GLU MODRES 1KGS MSE A 26 MET SELENOMETHIONINE MODRES 1KGS MSE A 39 MET SELENOMETHIONINE MODRES 1KGS MSE A 41 MET SELENOMETHIONINE MODRES 1KGS MSE A 55 MET SELENOMETHIONINE MODRES 1KGS MSE A 68 MET SELENOMETHIONINE MODRES 1KGS MSE A 79 MET SELENOMETHIONINE MODRES 1KGS MSE A 95 MET SELENOMETHIONINE MODRES 1KGS MSE A 165 MET SELENOMETHIONINE HET MSE A 26 8 HET MSE A 39 10 HET MSE A 41 8 HET MSE A 55 8 HET MSE A 68 8 HET MSE A 79 10 HET MSE A 95 8 HET MSE A 165 12 HET SCN A 301 3 HET SCN A 302 3 HET SCN A 303 3 HET SCN A 304 3 HET SCN A 305 3 HET SCN A 306 3 HETNAM MSE SELENOMETHIONINE HETNAM SCN THIOCYANATE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 SCN 6(C N S 1-) FORMUL 8 HOH *206(H2 O) HELIX 1 1 GLU A 11 GLU A 25 1 15 HELIX 2 2 ASP A 34 GLU A 45 1 12 HELIX 3 3 ASP A 60 SER A 71 1 12 HELIX 4 4 SER A 84 GLY A 92 1 9 HELIX 5 5 ASP A 106 SER A 122 1 17 HELIX 6 6 THR A 153 ASN A 166 1 14 HELIX 7 7 LYS A 173 LEU A 180 1 8 HELIX 8 8 VAL A 187 LYS A 205 1 19 SHEET 1 A 5 THR A 28 CYS A 32 0 SHEET 2 A 5 ARG A 4 VAL A 8 1 N VAL A 5 O THR A 28 SHEET 3 A 5 VAL A 49 ASP A 53 1 O ILE A 51 N LEU A 6 SHEET 4 A 5 VAL A 77 THR A 81 1 O LEU A 80 N LEU A 52 SHEET 5 A 5 ASP A 99 PRO A 102 1 O LEU A 101 N MSE A 79 SHEET 1 B 4 LYS A 128 CYS A 131 0 SHEET 2 B 4 LEU A 134 ASP A 137 -1 O LEU A 136 N LEU A 129 SHEET 3 B 4 LYS A 142 ARG A 145 -1 O TYR A 144 N ILE A 135 SHEET 4 B 4 LYS A 148 ILE A 150 -1 O ILE A 150 N ALA A 143 SHEET 1 C 3 VAL A 171 THR A 172 0 SHEET 2 C 3 GLY A 219 ALA A 222 -1 O TYR A 220 N VAL A 171 SHEET 3 C 3 ILE A 212 VAL A 215 -1 N VAL A 215 O GLY A 219 LINK C GLU A 25 N MSE A 26 1555 1555 1.34 LINK C MSE A 26 N PHE A 27 1555 1555 1.34 LINK C GLY A 38 N MSE A 39 1555 1555 1.32 LINK C MSE A 39 N TYR A 40 1555 1555 1.33 LINK C TYR A 40 N MSE A 41 1555 1555 1.33 LINK C MSE A 41 N ALA A 42 1555 1555 1.32 LINK C ILE A 54 N MSE A 55 1555 1555 1.33 LINK C MSE A 55 N LEU A 56 1555 1555 1.33 LINK C SER A 67 N MSE A 68 1555 1555 1.33 LINK C MSE A 68 N ARG A 69 1555 1555 1.32 LINK C LEU A 78 N MSE A 79 1555 1555 1.34 LINK C MSE A 79 N LEU A 80 1555 1555 1.33 LINK C ASN A 94 N MSE A 95 1555 1555 1.32 LINK C MSE A 95 N GLY A 96 1555 1555 1.31 LINK C VAL A 164 N MSE A 165 1555 1555 1.32 LINK C MSE A 165 N ASN A 166 1555 1555 1.33 CISPEP 1 LYS A 103 PRO A 104 0 2.06 SITE 1 AC1 6 ALA A 116 ARG A 119 ARG A 120 TYR A 144 SITE 2 AC1 6 GLY A 146 SER A 147 SITE 1 AC2 4 VAL A 90 HOH A 316 HOH A 333 HOH A 338 SITE 1 AC3 6 ARG A 12 ASP A 16 TYR A 33 ASN A 168 SITE 2 AC3 6 ARG A 223 HOH A 311 SITE 1 AC4 4 MSE A 39 TYR A 40 ASN A 44 HOH A 406 SITE 1 AC5 5 ARG A 12 HIS A 213 ARG A 223 GLU A 225 SITE 2 AC5 5 HOH A 426 SITE 1 AC6 3 ALA A 21 LYS A 24 HOH A 502 CRYST1 34.570 71.267 54.605 90.00 106.56 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028927 0.000000 0.008602 0.00000 SCALE2 0.000000 0.014032 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019106 0.00000