PDB Short entry for 1KJK HEADER VIRAL PROTEIN 04-DEC-01 1KJK TITLE SOLUTION STRUCTURE OF THE LAMBDA INTEGRASE AMINO-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AMINO-TERMINAL DOMAIN (RESIDUES 1-64); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA; SOURCE 3 ORGANISM_TAXID: 10710; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PIMC104 KEYWDS DNA RECOMBINATION, INTEGRASE, THREE-STRANDED BETA-SHEET, DNA-BINDING KEYWDS 2 DOMAIN, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR J.M.WOJCIAK,D.SARKAR,A.LANDY,R.T.CLUBB REVDAT 3 23-FEB-22 1KJK 1 REMARK REVDAT 2 24-FEB-09 1KJK 1 VERSN REVDAT 1 27-MAR-02 1KJK 0 JRNL AUTH J.M.WOJCIAK,D.SARKAR,A.LANDY,R.T.CLUBB JRNL TITL ARM-SITE BINDING BY LAMBDA -INTEGRASE: SOLUTION STRUCTURE JRNL TITL 2 AND FUNCTIONAL CHARACTERIZATION OF ITS AMINO-TERMINAL JRNL TITL 3 DOMAIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 3434 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 11904406 JRNL DOI 10.1073/PNAS.052017999 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE SGI6X, X-PLOR 3.851 REMARK 3 AUTHORS : DELAGLIO (NMRPIPE), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KJK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-01. REMARK 100 THE DEPOSITION ID IS D_1000015017. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 290 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM INTEGRASE U-15N,13C; 20MM REMARK 210 PO4 (PH 6.0), 100MM NACL, 10MM REMARK 210 DTT, 0.01% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; QUANTITATIVE J REMARK 210 CORRELATION REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PIPP/CAPP/STAPP 4.1.2 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-25 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 ARG A 5 REMARK 465 SER A 6 REMARK 465 HIS A 7 REMARK 465 GLU A 8 REMARK 465 ARG A 9 REMARK 465 ARG A 10 REMARK 465 LYS A 60 REMARK 465 HIS A 61 REMARK 465 LYS A 62 REMARK 465 PRO A 63 REMARK 465 LEU A 64 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 15 -17.35 70.84 REMARK 500 2 PRO A 13 145.43 -35.59 REMARK 500 2 LEU A 37 -69.56 -104.79 REMARK 500 2 SER A 57 53.63 -165.28 REMARK 500 3 ASN A 15 -9.35 61.70 REMARK 500 3 LEU A 37 -61.27 -102.53 REMARK 500 3 SER A 57 80.39 -154.44 REMARK 500 4 PRO A 13 158.84 -35.41 REMARK 500 4 LYS A 33 -161.97 -75.99 REMARK 500 4 SER A 57 47.75 -95.04 REMARK 500 5 ASN A 15 4.21 57.05 REMARK 500 5 SER A 57 59.58 -99.85 REMARK 500 6 PRO A 13 157.27 -40.21 REMARK 500 6 ASN A 15 -11.27 69.00 REMARK 500 6 SER A 57 18.07 49.78 REMARK 500 7 PRO A 13 154.94 -37.87 REMARK 500 7 ASN A 15 6.50 54.71 REMARK 500 8 PRO A 13 156.89 -40.60 REMARK 500 8 LYS A 33 -164.97 -74.76 REMARK 500 9 PRO A 13 158.78 -37.59 REMARK 500 9 ASN A 15 20.94 49.48 REMARK 500 9 ASN A 20 -8.85 -54.05 REMARK 500 9 SER A 57 19.17 53.93 REMARK 500 10 PRO A 13 157.24 -40.78 REMARK 500 10 LEU A 37 -73.87 -105.09 REMARK 500 10 SER A 57 -43.29 74.12 REMARK 500 11 PRO A 13 154.85 -35.29 REMARK 500 11 ASN A 15 -4.39 62.73 REMARK 500 11 LEU A 37 -71.48 -102.77 REMARK 500 11 SER A 57 69.61 -163.68 REMARK 500 12 PRO A 13 158.62 -36.14 REMARK 500 12 ASN A 15 10.43 52.27 REMARK 500 12 SER A 57 61.61 -167.97 REMARK 500 13 ASN A 15 8.69 55.64 REMARK 500 13 TYR A 17 -166.59 -127.38 REMARK 500 13 LEU A 37 -68.87 -99.15 REMARK 500 13 SER A 57 17.31 52.15 REMARK 500 14 PRO A 13 157.50 -34.94 REMARK 500 14 SER A 57 75.01 -151.89 REMARK 500 15 PRO A 13 158.74 -35.92 REMARK 500 15 ASN A 15 1.25 59.71 REMARK 500 15 LYS A 33 -166.09 -75.25 REMARK 500 15 SER A 57 70.36 -153.61 REMARK 500 16 ASN A 15 -15.83 73.34 REMARK 500 16 PRO A 29 0.82 -58.41 REMARK 500 16 SER A 57 39.13 -164.54 REMARK 500 17 ASN A 15 19.61 59.96 REMARK 500 17 LEU A 37 -63.80 -99.08 REMARK 500 17 SER A 57 -32.45 -170.50 REMARK 500 18 ASN A 15 -10.49 74.19 REMARK 500 REMARK 500 THIS ENTRY HAS 72 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1KJK A 1 64 UNP P03700 VINT_LAMBD 1 64 SEQRES 1 A 64 MET GLY ARG ARG ARG SER HIS GLU ARG ARG ASP LEU PRO SEQRES 2 A 64 PRO ASN LEU TYR ILE ARG ASN ASN GLY TYR TYR CYS TYR SEQRES 3 A 64 ARG ASP PRO ARG THR GLY LYS GLU PHE GLY LEU GLY ARG SEQRES 4 A 64 ASP ARG ARG ILE ALA ILE THR GLU ALA ILE GLN ALA ASN SEQRES 5 A 64 ILE GLU LEU PHE SER GLY HIS LYS HIS LYS PRO LEU HELIX 1 1 ASP A 40 GLY A 58 1 19 SHEET 1 A 3 LEU A 16 ILE A 18 0 SHEET 2 A 3 TYR A 24 ARG A 27 -1 O CYS A 25 N TYR A 17 SHEET 3 A 3 GLU A 34 GLY A 38 -1 O GLY A 38 N TYR A 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000