PDB Short entry for 1KNY HEADER TRANSFERASE 07-JUL-95 1KNY TITLE KANAMYCIN NUCLEOTIDYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: KANAMYCIN NUCLEOTIDYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: KNTASE; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PX(T7)TK101 KEYWDS ANTIBIOTIC RESISTANCE, TRANSFERASE, PLASMID EXPDTA X-RAY DIFFRACTION AUTHOR L.C.PEDERSEN,M.M.BENNING,H.M.HOLDEN REVDAT 4 14-FEB-24 1KNY 1 REMARK REVDAT 3 03-NOV-21 1KNY 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1KNY 1 VERSN REVDAT 1 17-AUG-96 1KNY 0 JRNL AUTH L.C.PEDERSEN,M.M.BENNING,H.M.HOLDEN JRNL TITL STRUCTURAL INVESTIGATION OF THE ANTIBIOTIC AND ATP-BINDING JRNL TITL 2 SITES IN KANAMYCIN NUCLEOTIDYLTRANSFERASE. JRNL REF BIOCHEMISTRY V. 34 13305 1995 JRNL REFN ISSN 0006-2960 JRNL PMID 7577914 JRNL DOI 10.1021/BI00041A005 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 19405 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4058 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 130 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : NULL ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KNY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.65000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.40000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.10000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.40000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.65000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.10000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 52 O HOH B 619 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER A 112 N ASP B 111 1455 1.02 REMARK 500 N GLY A 114 O ILE B 109 1455 1.47 REMARK 500 CG GLU A 117 ND1 HIS B 17 1455 1.63 REMARK 500 OE1 GLN A 43 O GLN B 43 1455 1.65 REMARK 500 C SER A 112 N ASP B 111 1455 1.68 REMARK 500 CG GLU A 117 CG HIS B 17 1455 1.69 REMARK 500 CG GLU A 117 CE1 HIS B 17 1455 1.84 REMARK 500 CB ASP A 111 O PRO B 108 1455 1.89 REMARK 500 CB GLU A 117 CD2 HIS B 17 1455 1.92 REMARK 500 CG GLU A 117 CD2 HIS B 17 1455 1.99 REMARK 500 O SER A 112 C TYR B 110 1455 2.03 REMARK 500 CD GLN A 43 O GLN B 43 1455 2.05 REMARK 500 CA GLY A 114 O ILE B 109 1455 2.06 REMARK 500 CG GLU A 117 NE2 HIS B 17 1455 2.07 REMARK 500 CB GLU A 117 NE2 HIS B 17 1455 2.10 REMARK 500 O SER A 112 CA ASP B 111 1455 2.12 REMARK 500 NE2 GLN A 43 O GLN B 43 1455 2.12 REMARK 500 CD GLU A 117 CG HIS B 17 1455 2.12 REMARK 500 CB SER A 112 O ASP B 111 1455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 21 CD GLU A 21 OE1 0.069 REMARK 500 GLU A 52 CD GLU A 52 OE2 0.071 REMARK 500 GLU A 60 CD GLU A 60 OE2 0.079 REMARK 500 GLU A 61 CD GLU A 61 OE2 0.066 REMARK 500 GLU A 63 CD GLU A 63 OE1 0.068 REMARK 500 GLU A 83 CD GLU A 83 OE1 0.077 REMARK 500 GLU A 93 CD GLU A 93 OE2 0.070 REMARK 500 GLU A 127 CD GLU A 127 OE2 0.072 REMARK 500 GLU A 141 CD GLU A 141 OE1 0.067 REMARK 500 GLU A 142 CD GLU A 142 OE1 0.094 REMARK 500 GLU A 145 CD GLU A 145 OE2 0.098 REMARK 500 GLU A 221 CD GLU A 221 OE1 0.075 REMARK 500 GLU A 225 CD GLU A 225 OE1 0.069 REMARK 500 GLU A 236 CD GLU A 236 OE1 0.070 REMARK 500 GLU B 11 CD GLU B 11 OE1 0.068 REMARK 500 GLU B 60 CD GLU B 60 OE1 0.074 REMARK 500 GLU B 61 CD GLU B 61 OE1 0.069 REMARK 500 GLU B 63 CD GLU B 63 OE1 0.071 REMARK 500 GLU B 72 CD GLU B 72 OE2 0.068 REMARK 500 GLU B 76 CD GLU B 76 OE1 0.071 REMARK 500 GLU B 82 CD GLU B 82 OE1 0.071 REMARK 500 GLU B 117 CD GLU B 117 OE1 0.074 REMARK 500 GLU B 127 CD GLU B 127 OE1 0.071 REMARK 500 GLU B 225 CD GLU B 225 OE2 0.072 REMARK 500 GLU B 228 CD GLU B 228 OE1 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 12 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A 45 CB - CG - OD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 87 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP A 219 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 PRO A 252 C - N - CD ANGL. DEV. = -18.5 DEGREES REMARK 500 ASP B 25 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP B 29 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 29 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP B 45 CB - CG - OD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP B 50 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 50 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP B 87 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP B 95 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 PRO B 108 C - N - CD ANGL. DEV. = -14.5 DEGREES REMARK 500 ASP B 111 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG B 151 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 151 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 200 CB - CG - OD1 ANGL. DEV. = -7.5 DEGREES REMARK 500 PRO B 252 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 43 33.63 72.67 REMARK 500 GLU A 83 -70.88 -68.11 REMARK 500 ILE A 84 -38.32 -36.61 REMARK 500 TYR A 110 122.93 -171.86 REMARK 500 SER A 125 61.46 -101.73 REMARK 500 GLU A 142 -81.79 -119.85 REMARK 500 ARG A 154 -70.05 -50.13 REMARK 500 VAL A 155 -73.90 -39.38 REMARK 500 THR A 186 -79.11 -54.73 REMARK 500 VAL A 196 4.36 -63.93 REMARK 500 GLN A 198 170.38 -46.64 REMARK 500 SER A 199 -75.83 -80.82 REMARK 500 SER A 248 -68.90 -17.35 REMARK 500 PRO A 252 -15.58 -44.59 REMARK 500 GLU B 61 39.85 -72.85 REMARK 500 GLU B 63 71.12 -175.06 REMARK 500 SER B 105 28.75 -65.31 REMARK 500 ASP B 111 112.20 -166.00 REMARK 500 LEU B 116 0.56 -65.59 REMARK 500 SER B 125 57.38 -106.28 REMARK 500 VAL B 140 -71.86 -67.11 REMARK 500 GLU B 142 -69.50 -123.50 REMARK 500 ARG B 182 35.99 30.12 REMARK 500 VAL B 196 1.83 -68.81 REMARK 500 SER B 199 -78.07 -83.84 REMARK 500 ASP B 200 29.93 -58.05 REMARK 500 PRO B 252 35.80 -67.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 52 OE2 REMARK 620 2 GLU A 52 OE1 56.3 REMARK 620 3 APC A 556 O1G 139.5 164.1 REMARK 620 4 APC A 556 O2B 87.8 95.8 86.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 52 OE1 REMARK 620 2 GLU B 52 OE2 45.2 REMARK 620 3 APC B 557 O1G 176.1 131.0 REMARK 620 4 APC B 557 O2B 80.6 98.7 101.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APC A 556 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APC B 557 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KAN A 558 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KAN B 559 DBREF 1KNY A 1 253 UNP P05057 KANU_STAAU 1 253 DBREF 1KNY B 1 253 UNP P05057 KANU_STAAU 1 253 SEQADV 1KNY TYR A 80 UNP P05057 ASP 80 ENGINEERED MUTATION SEQADV 1KNY TYR B 80 UNP P05057 ASP 80 ENGINEERED MUTATION SEQRES 1 A 253 MET ASN GLY PRO ILE ILE MET THR ARG GLU GLU ARG MET SEQRES 2 A 253 LYS ILE VAL HIS GLU ILE LYS GLU ARG ILE LEU ASP LYS SEQRES 3 A 253 TYR GLY ASP ASP VAL LYS ALA ILE GLY VAL TYR GLY SER SEQRES 4 A 253 LEU GLY ARG GLN THR ASP GLY PRO TYR SER ASP ILE GLU SEQRES 5 A 253 MET MET CYS VAL MET SER THR GLU GLU ALA GLU PHE SER SEQRES 6 A 253 HIS GLU TRP THR THR GLY GLU TRP LYS VAL GLU VAL ASN SEQRES 7 A 253 PHE TYR SER GLU GLU ILE LEU LEU ASP TYR ALA SER GLN SEQRES 8 A 253 VAL GLU SER ASP TRP PRO LEU THR HIS GLY GLN PHE PHE SEQRES 9 A 253 SER ILE LEU PRO ILE TYR ASP SER GLY GLY TYR LEU GLU SEQRES 10 A 253 LYS VAL TYR GLN THR ALA LYS SER VAL GLU ALA GLN THR SEQRES 11 A 253 PHE HIS ASP ALA ILE CYS ALA LEU ILE VAL GLU GLU LEU SEQRES 12 A 253 PHE GLU TYR ALA GLY LYS TRP ARG ASN ILE ARG VAL GLN SEQRES 13 A 253 GLY PRO THR THR PHE LEU PRO SER LEU THR VAL GLN VAL SEQRES 14 A 253 ALA MET ALA GLY ALA MET LEU ILE GLY LEU HIS HIS ARG SEQRES 15 A 253 ILE CYS TYR THR THR SER ALA SER VAL LEU THR GLU ALA SEQRES 16 A 253 VAL LYS GLN SER ASP LEU PRO SER GLY TYR ASP HIS LEU SEQRES 17 A 253 CYS GLN PHE VAL MET SER GLY GLN LEU SER ASP SER GLU SEQRES 18 A 253 LYS LEU LEU GLU SER LEU GLU ASN PHE TRP ASN GLY ILE SEQRES 19 A 253 GLN GLU TRP THR GLU ARG HIS GLY TYR ILE VAL ASP VAL SEQRES 20 A 253 SER LYS ARG ILE PRO PHE SEQRES 1 B 253 MET ASN GLY PRO ILE ILE MET THR ARG GLU GLU ARG MET SEQRES 2 B 253 LYS ILE VAL HIS GLU ILE LYS GLU ARG ILE LEU ASP LYS SEQRES 3 B 253 TYR GLY ASP ASP VAL LYS ALA ILE GLY VAL TYR GLY SER SEQRES 4 B 253 LEU GLY ARG GLN THR ASP GLY PRO TYR SER ASP ILE GLU SEQRES 5 B 253 MET MET CYS VAL MET SER THR GLU GLU ALA GLU PHE SER SEQRES 6 B 253 HIS GLU TRP THR THR GLY GLU TRP LYS VAL GLU VAL ASN SEQRES 7 B 253 PHE TYR SER GLU GLU ILE LEU LEU ASP TYR ALA SER GLN SEQRES 8 B 253 VAL GLU SER ASP TRP PRO LEU THR HIS GLY GLN PHE PHE SEQRES 9 B 253 SER ILE LEU PRO ILE TYR ASP SER GLY GLY TYR LEU GLU SEQRES 10 B 253 LYS VAL TYR GLN THR ALA LYS SER VAL GLU ALA GLN THR SEQRES 11 B 253 PHE HIS ASP ALA ILE CYS ALA LEU ILE VAL GLU GLU LEU SEQRES 12 B 253 PHE GLU TYR ALA GLY LYS TRP ARG ASN ILE ARG VAL GLN SEQRES 13 B 253 GLY PRO THR THR PHE LEU PRO SER LEU THR VAL GLN VAL SEQRES 14 B 253 ALA MET ALA GLY ALA MET LEU ILE GLY LEU HIS HIS ARG SEQRES 15 B 253 ILE CYS TYR THR THR SER ALA SER VAL LEU THR GLU ALA SEQRES 16 B 253 VAL LYS GLN SER ASP LEU PRO SER GLY TYR ASP HIS LEU SEQRES 17 B 253 CYS GLN PHE VAL MET SER GLY GLN LEU SER ASP SER GLU SEQRES 18 B 253 LYS LEU LEU GLU SER LEU GLU ASN PHE TRP ASN GLY ILE SEQRES 19 B 253 GLN GLU TRP THR GLU ARG HIS GLY TYR ILE VAL ASP VAL SEQRES 20 B 253 SER LYS ARG ILE PRO PHE HET MG A 603 1 HET APC A 556 31 HET KAN A 558 33 HET MG B 604 1 HET APC B 557 31 HET KAN B 559 33 HETNAM MG MAGNESIUM ION HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETNAM KAN KANAMYCIN A HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 APC 2(C11 H18 N5 O12 P3) FORMUL 5 KAN 2(C18 H36 N4 O11) FORMUL 9 HOH *43(H2 O) HELIX 1 1 ARG A 9 ASP A 30 1 22 HELIX 2 2 GLY A 38 ARG A 42 1 5 HELIX 3 3 GLU A 82 SER A 90 1 9 HELIX 4 4 TRP A 96 PHE A 103 1 8 HELIX 5 5 TYR A 115 LYS A 124 1 10 HELIX 6 6 ALA A 128 GLU A 141 1 14 HELIX 7 7 LEU A 143 GLN A 156 1 14 HELIX 8 8 LEU A 162 HIS A 181 1 20 HELIX 9 9 VAL A 191 LYS A 197 1 7 HELIX 10 10 TYR A 205 SER A 214 1 10 HELIX 11 11 SER A 220 HIS A 241 1 22 HELIX 12 12 ARG B 9 ASP B 30 1 22 HELIX 13 13 GLY B 38 ARG B 42 1 5 HELIX 14 14 GLU B 82 ALA B 89 1 8 HELIX 15 15 TRP B 96 PHE B 103 1 8 HELIX 16 16 TYR B 115 LYS B 124 1 10 HELIX 17 17 ALA B 128 GLU B 141 1 14 HELIX 18 18 LEU B 143 GLN B 156 1 14 HELIX 19 19 THR B 159 HIS B 180 5 22 HELIX 20 20 SER B 188 LYS B 197 5 10 HELIX 21 21 TYR B 205 SER B 214 1 10 HELIX 22 22 SER B 220 HIS B 241 1 22 SHEET 1 A 5 GLU A 63 THR A 69 0 SHEET 2 A 5 LYS A 74 SER A 81 -1 N PHE A 79 O PHE A 64 SHEET 3 A 5 ILE A 51 MET A 57 1 N ILE A 51 O GLU A 76 SHEET 4 A 5 VAL A 31 TYR A 37 -1 N TYR A 37 O GLU A 52 SHEET 5 A 5 LEU A 107 ASP A 111 -1 N TYR A 110 O ILE A 34 SHEET 1 B 5 GLU B 63 THR B 69 0 SHEET 2 B 5 LYS B 74 SER B 81 -1 N PHE B 79 O PHE B 64 SHEET 3 B 5 ILE B 51 MET B 57 1 N ILE B 51 O GLU B 76 SHEET 4 B 5 VAL B 31 TYR B 37 -1 N TYR B 37 O GLU B 52 SHEET 5 B 5 LEU B 107 ASP B 111 -1 N TYR B 110 O ILE B 34 LINK OE2 GLU A 52 MG MG A 603 1555 1555 2.00 LINK OE1 GLU A 52 MG MG A 603 1555 1555 2.61 LINK O1G APC A 556 MG MG A 603 1555 1555 2.24 LINK O2B APC A 556 MG MG A 603 1555 1555 2.65 LINK OE1 GLU B 52 MG MG B 604 1555 1555 3.02 LINK OE2 GLU B 52 MG MG B 604 1555 1555 2.58 LINK O1G APC B 557 MG MG B 604 1555 1555 2.32 LINK O2B APC B 557 MG MG B 604 1555 1555 2.00 CISPEP 1 GLY A 157 PRO A 158 0 2.15 CISPEP 2 GLY B 157 PRO B 158 0 5.32 SITE 1 AC1 4 SER A 39 ASP A 50 GLU A 52 APC A 556 SITE 1 AC2 4 SER B 39 ASP B 50 GLU B 52 APC B 557 SITE 1 AC3 19 GLY A 38 SER A 39 ARG A 42 SER A 49 SITE 2 AC3 19 ASP A 50 GLU A 52 LEU A 98 THR A 99 SITE 3 AC3 19 GLN A 102 THR A 186 THR A 187 SER A 188 SITE 4 AC3 19 MG A 603 HOH A 608 HOH A 611 HOH A 631 SITE 5 AC3 19 GLU B 145 LYS B 149 KAN B 559 SITE 1 AC4 17 GLU A 145 LYS A 149 KAN A 558 TYR B 37 SITE 2 AC4 17 GLY B 38 SER B 39 ARG B 42 SER B 49 SITE 3 AC4 17 ASP B 50 GLU B 52 LEU B 98 THR B 99 SITE 4 AC4 17 THR B 186 THR B 187 SER B 188 MG B 604 SITE 5 AC4 17 HOH B 619 SITE 1 AC5 9 SER A 94 ASP A 95 GLU A 141 GLU A 142 SITE 2 AC5 9 GLU A 145 GLU B 67 GLU B 76 APC B 557 SITE 3 AC5 9 KAN B 559 SITE 1 AC6 9 GLU A 67 LYS A 74 GLU A 76 APC A 556 SITE 2 AC6 9 KAN A 558 SER B 94 ASP B 95 GLU B 141 SITE 3 AC6 9 GLU B 145 CRYST1 57.300 102.200 108.800 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017452 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009785 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009191 0.00000