PDB Short entry for 1KO6 HEADER TRANSFERASE 20-DEC-01 1KO6 TITLE CRYSTAL STRUCTURE OF C-TERMINAL AUTOPROTEOLYTIC DOMAIN OF NUCLEOPORIN TITLE 2 NUP98 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP98; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: C-TERMINAL AUTOPROTEOLYTIC DOMAIN (SEQUENCE DATABASE COMPND 5 RESIDUES 677-863); COMPND 6 SYNONYM: NUCLEOPORIN NUP98, 98KDA NUCLEOPORIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP98; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: C-TERMINAL AUTOPROTEOLYTIC DOMAIN (SEQUENCE DATABASE COMPND 12 RESIDUES 864-920); COMPND 13 SYNONYM: NUCLEOPORIN NUP98, 98KDA NUCLEOPORIN; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_GENE: NUP98; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_GENE: NUP98 KEYWDS NUCLEOPORIN, AUTOPROTEOLYSIS, NUCLEAR PORE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.E.HODEL,M.R.HODEL,E.R.GRIFFIS,K.A.HENNIG,G.A.RATNER,X.SONGLI, AUTHOR 2 M.A.POWERS REVDAT 4 21-DEC-22 1KO6 1 SEQADV REVDAT 3 24-FEB-09 1KO6 1 VERSN REVDAT 2 07-OCT-03 1KO6 1 JRNL CRYST1 SCALE1 REVDAT 1 04-SEP-02 1KO6 0 JRNL AUTH A.E.HODEL,M.R.HODEL,E.R.GRIFFIS,K.A.HENNIG,G.A.RATNER,S.XU, JRNL AUTH 2 M.A.POWERS JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF THE AUTOPROTEOLYTIC, JRNL TITL 2 NUCLEAR PORE-TARGETING DOMAIN OF THE HUMAN NUCLEOPORIN JRNL TITL 3 NUP98. JRNL REF MOL.CELL V. 10 347 2002 JRNL REFN ISSN 1097-2765 JRNL PMID 12191480 JRNL DOI 10.1016/S1097-2765(02)00589-0 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 30782 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3079 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2480 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KO6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE DEPOSITION ID IS D_1000015165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-00 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 8.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41000 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT+MIR REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MGCL, PEG8000, TRIS, PH 8.75, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.60000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.95000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.80000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.95000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 152.40000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.95000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.95000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.80000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.95000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.95000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 152.40000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 101.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 677 REMARK 465 ALA A 678 REMARK 465 ALA A 679 REMARK 465 LEU A 680 REMARK 465 ARG A 681 REMARK 465 ASN A 682 REMARK 465 GLY A 683 REMARK 465 LEU A 684 REMARK 465 GLU A 685 REMARK 465 GLY A 686 REMARK 465 SER A 687 REMARK 465 SER A 688 REMARK 465 GLU A 689 REMARK 465 GLU A 690 REMARK 465 THR A 691 REMARK 465 SER A 692 REMARK 465 PHE A 693 REMARK 465 HIS A 694 REMARK 465 ASP A 695 REMARK 465 GLU A 696 REMARK 465 SER A 697 REMARK 465 LEU A 698 REMARK 465 GLN A 699 REMARK 465 ASP A 700 REMARK 465 ASP A 701 REMARK 465 ARG A 702 REMARK 465 GLU A 703 REMARK 465 GLU A 704 REMARK 465 ILE A 705 REMARK 465 GLU A 706 REMARK 465 ASN A 707 REMARK 465 ASN A 708 REMARK 465 SER A 709 REMARK 465 TYR A 710 REMARK 465 HIS A 711 REMARK 465 SER B 864 REMARK 465 SER B 871 REMARK 465 ASP B 872 REMARK 465 GLU B 873 REMARK 465 GLU B 874 REMARK 465 GLU B 875 REMARK 465 GLU B 876 REMARK 465 GLU B 877 REMARK 465 HIS B 878 REMARK 465 PRO B 879 REMARK 465 SER B 880 REMARK 465 LYS B 881 REMARK 465 THR B 882 REMARK 465 SER B 883 REMARK 465 THR B 884 REMARK 465 LYS B 885 REMARK 465 LYS B 886 REMARK 465 LEU B 887 REMARK 465 LYS B 888 REMARK 465 THR B 889 REMARK 465 ALA B 890 REMARK 465 PRO B 891 REMARK 465 LEU B 892 REMARK 465 PRO B 893 REMARK 465 PRO B 894 REMARK 465 ALA B 895 REMARK 465 SER B 896 REMARK 465 GLN B 897 REMARK 465 THR B 898 REMARK 465 THR B 899 REMARK 465 PRO B 900 REMARK 465 LEU B 901 REMARK 465 GLN B 902 REMARK 465 MET B 903 REMARK 465 ALA B 904 REMARK 465 LEU B 905 REMARK 465 ASN B 906 REMARK 465 GLY B 907 REMARK 465 LYS B 908 REMARK 465 PRO B 909 REMARK 465 ALA B 910 REMARK 465 PRO B 911 REMARK 465 PRO B 912 REMARK 465 PRO B 913 REMARK 465 GLN B 914 REMARK 465 VAL B 915 REMARK 465 GLU B 916 REMARK 465 LYS B 917 REMARK 465 LYS B 918 REMARK 465 GLY B 919 REMARK 465 GLN B 920 REMARK 465 LEU B 921 REMARK 465 GLU B 922 REMARK 465 HIS B 923 REMARK 465 HIS B 924 REMARK 465 HIS B 925 REMARK 465 HIS B 926 REMARK 465 HIS B 927 REMARK 465 MET C 677 REMARK 465 ALA C 678 REMARK 465 ALA C 679 REMARK 465 LEU C 680 REMARK 465 ARG C 681 REMARK 465 ASN C 682 REMARK 465 GLY C 683 REMARK 465 LEU C 684 REMARK 465 GLU C 685 REMARK 465 GLY C 686 REMARK 465 SER C 687 REMARK 465 SER C 688 REMARK 465 GLU C 689 REMARK 465 GLU C 690 REMARK 465 THR C 691 REMARK 465 SER C 692 REMARK 465 PHE C 693 REMARK 465 HIS C 694 REMARK 465 ASP C 695 REMARK 465 GLU C 696 REMARK 465 SER C 697 REMARK 465 LEU C 698 REMARK 465 GLN C 699 REMARK 465 ASP C 700 REMARK 465 ASP C 701 REMARK 465 ARG C 702 REMARK 465 GLU C 703 REMARK 465 GLU C 704 REMARK 465 ILE C 705 REMARK 465 GLU C 706 REMARK 465 ASN C 707 REMARK 465 ASN C 708 REMARK 465 SER C 709 REMARK 465 TYR C 710 REMARK 465 HIS C 711 REMARK 465 MET C 712 REMARK 465 GLU C 739 REMARK 465 LYS C 740 REMARK 465 GLY C 741 REMARK 465 SER D 864 REMARK 465 SER D 871 REMARK 465 ASP D 872 REMARK 465 GLU D 873 REMARK 465 GLU D 874 REMARK 465 GLU D 875 REMARK 465 GLU D 876 REMARK 465 GLU D 877 REMARK 465 HIS D 878 REMARK 465 PRO D 879 REMARK 465 SER D 880 REMARK 465 LYS D 881 REMARK 465 THR D 882 REMARK 465 SER D 883 REMARK 465 THR D 884 REMARK 465 LYS D 885 REMARK 465 LYS D 886 REMARK 465 LEU D 887 REMARK 465 LYS D 888 REMARK 465 THR D 889 REMARK 465 ALA D 890 REMARK 465 PRO D 891 REMARK 465 LEU D 892 REMARK 465 PRO D 893 REMARK 465 PRO D 894 REMARK 465 ALA D 895 REMARK 465 SER D 896 REMARK 465 GLN D 897 REMARK 465 THR D 898 REMARK 465 THR D 899 REMARK 465 PRO D 900 REMARK 465 LEU D 901 REMARK 465 GLN D 902 REMARK 465 MET D 903 REMARK 465 ALA D 904 REMARK 465 LEU D 905 REMARK 465 ASN D 906 REMARK 465 GLY D 907 REMARK 465 LYS D 908 REMARK 465 PRO D 909 REMARK 465 ALA D 910 REMARK 465 PRO D 911 REMARK 465 PRO D 912 REMARK 465 PRO D 913 REMARK 465 GLN D 914 REMARK 465 VAL D 915 REMARK 465 GLU D 916 REMARK 465 LYS D 917 REMARK 465 LYS D 918 REMARK 465 GLY D 919 REMARK 465 GLN D 920 REMARK 465 LEU D 921 REMARK 465 GLU D 922 REMARK 465 HIS D 923 REMARK 465 HIS D 924 REMARK 465 HIS D 925 REMARK 465 HIS D 926 REMARK 465 HIS D 927 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 712 CG SD CE REMARK 470 LYS A 814 CG CD CE NZ REMARK 470 THR C 737 OG1 CG2 REMARK 470 ASP D 870 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 870 NE2 GLN C 845 1.61 REMARK 500 NZ LYS A 780 OD1 ASP B 870 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 840 CG LEU C 819 5655 0.98 REMARK 500 NH2 ARG A 840 CA LEU C 819 5655 1.50 REMARK 500 NH1 ARG A 840 CD2 LEU C 819 5655 1.72 REMARK 500 NH1 ARG A 840 CB LEU C 819 5655 1.76 REMARK 500 NH2 ARG A 840 N LEU C 819 5655 1.78 REMARK 500 CZ ARG A 840 CA LEU C 819 5655 2.13 REMARK 500 CZ ARG A 840 N LEU C 819 5655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 761 C GLY C 762 N -0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU C 761 O - C - N ANGL. DEV. = -11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 713 129.65 -11.11 REMARK 500 GLU A 739 0.80 -69.83 REMARK 500 ASP A 747 86.62 37.61 REMARK 500 LYS A 753 120.44 -37.56 REMARK 500 THR A 767 121.75 -39.05 REMARK 500 GLU A 781 119.98 174.55 REMARK 500 TYR A 785 95.28 61.73 REMARK 500 LEU A 786 -90.87 -47.38 REMARK 500 ASP A 788 56.75 -61.75 REMARK 500 ARG A 800 -159.29 -80.38 REMARK 500 THR A 815 -85.08 -60.69 REMARK 500 LEU A 819 179.54 63.72 REMARK 500 GLU A 848 -168.03 -165.75 REMARK 500 GLN B 869 33.48 -89.27 REMARK 500 PRO C 714 -73.96 -4.62 REMARK 500 ALA C 715 66.19 -107.23 REMARK 500 LEU C 719 104.07 -160.42 REMARK 500 SER C 729 157.39 -49.01 REMARK 500 ASP C 731 -82.84 -51.10 REMARK 500 LEU C 733 11.12 -58.71 REMARK 500 ALA C 734 -65.88 -103.52 REMARK 500 LYS C 735 5.77 -60.50 REMARK 500 CYS C 743 59.50 -176.73 REMARK 500 TYR C 755 -65.56 -102.48 REMARK 500 ASP C 763 124.59 -37.49 REMARK 500 THR C 767 -78.91 1.88 REMARK 500 ASN C 770 69.42 -107.32 REMARK 500 ARG C 779 123.83 -36.38 REMARK 500 GLU C 781 111.10 -173.92 REMARK 500 TYR C 785 100.75 71.22 REMARK 500 LEU C 786 -72.01 -53.03 REMARK 500 ASP C 788 -4.44 -40.90 REMARK 500 LYS C 791 90.78 -32.74 REMARK 500 PRO C 792 175.36 -50.94 REMARK 500 ARG C 800 -164.62 -71.15 REMARK 500 LEU C 819 138.71 72.96 REMARK 500 ASN C 830 56.72 39.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU C 761 -10.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE CHAINS A(C) AND B(D) ARE AUTOCATALYTICALLY CLEAVED REMARK 999 BETWEEN RESIDUES 863 AND 864. DBREF 1KO6 A 678 863 UNP P52948 NUP98_HUMAN 678 863 DBREF 1KO6 C 678 863 UNP P52948 NUP98_HUMAN 678 863 DBREF 1KO6 B 864 920 UNP P52948 NU98_HUMAN 864 920 DBREF 1KO6 D 864 920 UNP P52948 NU98_HUMAN 864 920 SEQADV 1KO6 MET A 677 UNP P52948 INITIATING METHIONINE SEQADV 1KO6 MET C 677 UNP P52948 INITIATING METHIONINE SEQADV 1KO6 LEU B 921 UNP P52948 EXPRESSION TAG SEQADV 1KO6 GLU B 922 UNP P52948 EXPRESSION TAG SEQADV 1KO6 HIS B 923 UNP P52948 EXPRESSION TAG SEQADV 1KO6 HIS B 924 UNP P52948 EXPRESSION TAG SEQADV 1KO6 HIS B 925 UNP P52948 EXPRESSION TAG SEQADV 1KO6 HIS B 926 UNP P52948 EXPRESSION TAG SEQADV 1KO6 HIS B 927 UNP P52948 EXPRESSION TAG SEQADV 1KO6 LEU D 921 UNP P52948 EXPRESSION TAG SEQADV 1KO6 GLU D 922 UNP P52948 EXPRESSION TAG SEQADV 1KO6 HIS D 923 UNP P52948 EXPRESSION TAG SEQADV 1KO6 HIS D 924 UNP P52948 EXPRESSION TAG SEQADV 1KO6 HIS D 925 UNP P52948 EXPRESSION TAG SEQADV 1KO6 HIS D 926 UNP P52948 EXPRESSION TAG SEQADV 1KO6 HIS D 927 UNP P52948 EXPRESSION TAG SEQRES 1 A 187 MET ALA ALA LEU ARG ASN GLY LEU GLU GLY SER SER GLU SEQRES 2 A 187 GLU THR SER PHE HIS ASP GLU SER LEU GLN ASP ASP ARG SEQRES 3 A 187 GLU GLU ILE GLU ASN ASN SER TYR HIS MET HIS PRO ALA SEQRES 4 A 187 GLY ILE ILE LEU THR LYS VAL GLY TYR TYR THR ILE PRO SEQRES 5 A 187 SER MET ASP ASP LEU ALA LYS ILE THR ASN GLU LYS GLY SEQRES 6 A 187 GLU CYS ILE VAL SER ASP PHE THR ILE GLY ARG LYS GLY SEQRES 7 A 187 TYR GLY SER ILE TYR PHE GLU GLY ASP VAL ASN LEU THR SEQRES 8 A 187 ASN LEU ASN LEU ASP ASP ILE VAL HIS ILE ARG ARG LYS SEQRES 9 A 187 GLU VAL VAL VAL TYR LEU ASP ASP ASN GLN LYS PRO PRO SEQRES 10 A 187 VAL GLY GLU GLY LEU ASN ARG LYS ALA GLU VAL THR LEU SEQRES 11 A 187 ASP GLY VAL TRP PRO THR ASP LYS THR SER ARG CYS LEU SEQRES 12 A 187 ILE LYS SER PRO ASP ARG LEU ALA ASP ILE ASN TYR GLU SEQRES 13 A 187 GLY ARG LEU GLU ALA VAL SER ARG LYS GLN GLY ALA GLN SEQRES 14 A 187 PHE LYS GLU TYR ARG PRO GLU THR GLY SER TRP VAL PHE SEQRES 15 A 187 LYS VAL SER HIS PHE SEQRES 1 B 64 SER LYS TYR GLY LEU GLN ASP SER ASP GLU GLU GLU GLU SEQRES 2 B 64 GLU HIS PRO SER LYS THR SER THR LYS LYS LEU LYS THR SEQRES 3 B 64 ALA PRO LEU PRO PRO ALA SER GLN THR THR PRO LEU GLN SEQRES 4 B 64 MET ALA LEU ASN GLY LYS PRO ALA PRO PRO PRO GLN VAL SEQRES 5 B 64 GLU LYS LYS GLY GLN LEU GLU HIS HIS HIS HIS HIS SEQRES 1 C 187 MET ALA ALA LEU ARG ASN GLY LEU GLU GLY SER SER GLU SEQRES 2 C 187 GLU THR SER PHE HIS ASP GLU SER LEU GLN ASP ASP ARG SEQRES 3 C 187 GLU GLU ILE GLU ASN ASN SER TYR HIS MET HIS PRO ALA SEQRES 4 C 187 GLY ILE ILE LEU THR LYS VAL GLY TYR TYR THR ILE PRO SEQRES 5 C 187 SER MET ASP ASP LEU ALA LYS ILE THR ASN GLU LYS GLY SEQRES 6 C 187 GLU CYS ILE VAL SER ASP PHE THR ILE GLY ARG LYS GLY SEQRES 7 C 187 TYR GLY SER ILE TYR PHE GLU GLY ASP VAL ASN LEU THR SEQRES 8 C 187 ASN LEU ASN LEU ASP ASP ILE VAL HIS ILE ARG ARG LYS SEQRES 9 C 187 GLU VAL VAL VAL TYR LEU ASP ASP ASN GLN LYS PRO PRO SEQRES 10 C 187 VAL GLY GLU GLY LEU ASN ARG LYS ALA GLU VAL THR LEU SEQRES 11 C 187 ASP GLY VAL TRP PRO THR ASP LYS THR SER ARG CYS LEU SEQRES 12 C 187 ILE LYS SER PRO ASP ARG LEU ALA ASP ILE ASN TYR GLU SEQRES 13 C 187 GLY ARG LEU GLU ALA VAL SER ARG LYS GLN GLY ALA GLN SEQRES 14 C 187 PHE LYS GLU TYR ARG PRO GLU THR GLY SER TRP VAL PHE SEQRES 15 C 187 LYS VAL SER HIS PHE SEQRES 1 D 64 SER LYS TYR GLY LEU GLN ASP SER ASP GLU GLU GLU GLU SEQRES 2 D 64 GLU HIS PRO SER LYS THR SER THR LYS LYS LEU LYS THR SEQRES 3 D 64 ALA PRO LEU PRO PRO ALA SER GLN THR THR PRO LEU GLN SEQRES 4 D 64 MET ALA LEU ASN GLY LYS PRO ALA PRO PRO PRO GLN VAL SEQRES 5 D 64 GLU LYS LYS GLY GLN LEU GLU HIS HIS HIS HIS HIS HELIX 1 1 SER A 729 THR A 737 1 9 HELIX 2 2 ASN A 770 ILE A 774 1 5 HELIX 3 3 SER A 822 ASN A 830 1 9 HELIX 4 4 ASN A 830 GLN A 842 1 13 HELIX 5 5 PRO A 851 GLY A 854 5 4 HELIX 6 6 ASP C 731 ILE C 736 1 6 HELIX 7 7 ASN C 770 ILE C 774 1 5 HELIX 8 8 GLU C 796 ARG C 800 5 5 HELIX 9 9 SER C 822 ILE C 829 1 8 HELIX 10 10 ASN C 830 GLN C 842 1 13 SHEET 1 A 6 TYR A 724 ILE A 727 0 SHEET 2 A 6 PHE A 748 ARG A 752 -1 O GLY A 751 N TYR A 725 SHEET 3 A 6 GLY A 756 PHE A 760 -1 O PHE A 760 N PHE A 748 SHEET 4 A 6 ALA A 802 LEU A 806 -1 O GLU A 803 N TYR A 759 SHEET 5 A 6 SER A 855 VAL A 860 -1 O PHE A 858 N VAL A 804 SHEET 6 A 6 GLN A 845 ARG A 850 -1 N GLN A 845 O LYS A 859 SHEET 1 B 2 ILE A 744 VAL A 745 0 SHEET 2 B 2 VAL A 764 ASN A 765 -1 O VAL A 764 N VAL A 745 SHEET 1 C 3 VAL A 775 ARG A 778 0 SHEET 2 C 3 GLU A 781 VAL A 784 -1 O VAL A 783 N HIS A 776 SHEET 3 C 3 TYR B 866 GLY B 867 -1 O TYR B 866 N VAL A 782 SHEET 1 D 6 TYR C 724 ILE C 727 0 SHEET 2 D 6 PHE C 748 ARG C 752 -1 O GLY C 751 N TYR C 725 SHEET 3 D 6 GLY C 756 PHE C 760 -1 O PHE C 760 N PHE C 748 SHEET 4 D 6 ALA C 802 LEU C 806 -1 O GLU C 803 N TYR C 759 SHEET 5 D 6 SER C 855 VAL C 860 -1 O PHE C 858 N VAL C 804 SHEET 6 D 6 GLN C 845 ARG C 850 -1 N GLN C 845 O LYS C 859 SHEET 1 E 3 VAL C 775 ARG C 778 0 SHEET 2 E 3 GLU C 781 VAL C 784 -1 O VAL C 783 N HIS C 776 SHEET 3 E 3 TYR D 866 GLY D 867 -1 O TYR D 866 N VAL C 782 CISPEP 1 ILE A 727 PRO A 728 0 0.18 CISPEP 2 ILE C 727 PRO C 728 0 0.11 CRYST1 89.900 89.900 203.200 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011123 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004921 0.00000