PDB Short entry for 1KQP HEADER LIGASE 07-JAN-02 1KQP TITLE NH3-DEPENDENT NAD+ SYNTHETASE FROM BACILLUS SUBTILIS AT 1 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NH(3)-DEPENDENT NAD(+) SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NH3-DEPENDENT NAD+ SYNTHETASE; NAD+ SYNTHASE; SPORULATION COMPND 5 PROTEIN OUTB; SPORE OUTGROWTH FACTOR B; GENERAL STRESS PROTEIN 38; COMPND 6 GSP38; COMPND 7 EC: 6.3.5.1; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: COMPLEXED WITH A REACTION INTERMEDIATE NAD-A, RESIDUE COMPND 10 ADJ SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: OUTB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DH3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21 KEYWDS LIGASE, AMIDOTRANSFERASE, ATP PYROPHOSPHATASE, NAD-ADENYLATE EXPDTA X-RAY DIFFRACTION AUTHOR J.SYMERSKY,Y.DEVEDJIEV,K.MOORE,C.BROUILLETTE,L.DELUCAS REVDAT 5 16-AUG-23 1KQP 1 REMARK LINK REVDAT 4 03-AUG-11 1KQP 1 ATOM REVDAT 3 13-JUL-11 1KQP 1 VERSN REVDAT 2 24-FEB-09 1KQP 1 VERSN REVDAT 1 28-JUN-02 1KQP 0 JRNL AUTH J.SYMERSKY,Y.DEVEDJIEV,K.MOORE,C.BROUILLETTE,L.DELUCAS JRNL TITL NH3-DEPENDENT NAD+ SYNTHETASE FROM BACILLUS SUBTILIS AT 1 A JRNL TITL 2 RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 58 1138 2002 JRNL REFN ISSN 0907-4449 JRNL PMID 12077433 JRNL DOI 10.1107/S0907444902006698 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.DEVEDJIEV,J.SYMERSKY,R.SINGH,M.JEDRZEJAS,C.BROUILLETTE, REMARK 1 AUTH 2 W.BROUILLETTE,D.MUCCIO,D.CHATTOPADHYAY,L.DELUCAS REMARK 1 TITL STABILIZATION OF ACTIVE-SITE LOOPS IN NH3-DEPENDENT NAD+ REMARK 1 TITL 2 SYNTHETASE FROM BACILLUS SUBTILIS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 57 806 2001 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444901003523 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.RIZZI,M.BOLOGNESI,A.CODA REMARK 1 TITL A NOVEL DEAMIDO-NAD+ BINDING SITE REVEALED BY THE TRAPPED REMARK 1 TITL 2 NAD-ADENYLATE INTERMEDIATE IN THE NAD+ SYNTHETASE STRUCTURE REMARK 1 REF STRUCTURE V. 6 1129 1998 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(98)00114-2 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.RIZZI,C.NESSI,A.MATTEVI,A.CODA,M.BOLOGNESI,A.GALIZZI REMARK 1 TITL CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM REMARK 1 TITL 2 BACILLUS SUBTILIS REMARK 1 REF EMBO J. V. 15 5125 1996 REMARK 1 REFN ISSN 0261-4189 REMARK 2 REMARK 2 RESOLUTION. 1.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.118 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.116 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.147 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 10811 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 216026 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.108 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.106 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.135 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 9017 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 179414 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4264 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 195 REMARK 3 SOLVENT ATOMS : 714 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 5072.1 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 4272.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 18 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 47101 REMARK 3 NUMBER OF RESTRAINTS : 52229 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 ANGLE DISTANCES (A) : 0.031 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.028 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.083 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.089 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.149 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.007 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.039 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.068 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KQP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-02. REMARK 100 THE DEPOSITION ID IS D_1000015240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-98 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9050 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 231200 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.028 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.38100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1EE1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 400, 0.05M TRIS, 0.05M MGCL2, REMARK 280 0.005M NAAD, 0.0025M ATP, PH 8.5, MICROGRAVITY/VAPOR DIFFUSION REMARK 280 AT 298K, MICROGRAVITY/VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.39500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER FROM THE ASYMMETRIC UNIT REMARK 300 (CHAINS A,B). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 157 HOS3 ADJ A 3001 1.30 REMARK 500 OE2 GLU B 223 HOR3 ADJ B 3002 1.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 17 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 88 CB - CG - OD2 ANGL. DEV. = 7.9 DEGREES REMARK 500 ASP A 106 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 GLY A 123 O - C - N ANGL. DEV. = -12.1 DEGREES REMARK 500 ASP A 124 C - N - CA ANGL. DEV. = 18.8 DEGREES REMARK 500 ARG A 137 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 187 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG A 187 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 190 NH1 - CZ - NH2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 190 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 201 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 251 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 HIS A 257 CG - ND1 - CE1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ARG A 259 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 268 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 GLU B 23 OE1 - CD - OE2 ANGL. DEV. = -9.8 DEGREES REMARK 500 GLU B 23 CG - CD - OE2 ANGL. DEV. = 17.5 DEGREES REMARK 500 GLY B 37 O - C - N ANGL. DEV. = -10.8 DEGREES REMARK 500 ARG B 78 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 78 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP B 88 CB - CG - OD1 ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG B 190 NH1 - CZ - NH2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG B 190 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 190 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 201 NH1 - CZ - NH2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG B 201 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 201 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 251 NE - CZ - NH1 ANGL. DEV. = -5.0 DEGREES REMARK 500 MET B 254 CA - CB - CG ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG B 259 NE - CZ - NH1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG B 259 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A5001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 50 OD2 REMARK 620 2 GLU A 162 OE1 82.9 REMARK 620 3 ADJ A3001 O1P 169.2 86.7 REMARK 620 4 POP A4001 O2 101.0 175.2 89.5 REMARK 620 5 POP A4001 O4 84.8 91.8 92.7 91.4 REMARK 620 6 HOH A6037 O 91.6 86.6 90.6 90.5 176.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A5002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 208 O REMARK 620 2 ADJ A3001 O3P 85.0 REMARK 620 3 POP A4001 O3 174.4 90.0 REMARK 620 4 POP A4001 O6 86.1 97.1 92.2 REMARK 620 5 HOH A6075 O 89.9 172.8 95.3 87.6 REMARK 620 6 HOH A6234 O 90.0 85.9 92.0 174.9 89.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B5004 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 50 OD2 REMARK 620 2 GLU B 162 OE2 83.2 REMARK 620 3 ADJ B3002 O1P 169.8 86.8 REMARK 620 4 POP B4002 O4 86.4 92.6 92.0 REMARK 620 5 POP B4002 O2 99.6 174.4 90.5 92.4 REMARK 620 6 HOH B6019 O 91.6 85.8 89.7 177.6 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B5005 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD1 REMARK 620 2 HOH B6061 O 96.2 REMARK 620 3 HOH B6073 O 90.5 88.8 REMARK 620 4 HOH B6122 O 87.1 174.3 86.5 REMARK 620 5 HOH B6149 O 88.9 93.4 177.7 91.3 REMARK 620 6 HOH B6156 O 173.5 89.0 93.6 88.0 86.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B5003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 208 O REMARK 620 2 ADJ B3002 O3P 83.8 REMARK 620 3 POP B4002 O6 86.5 97.2 REMARK 620 4 POP B4002 O3 175.8 92.2 92.8 REMARK 620 5 HOH B6039 O 88.8 85.0 174.5 92.1 REMARK 620 6 HOH B6043 O 89.7 171.3 88.2 94.4 89.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 5001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 5002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 5003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 5004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 5005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2008 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADJ A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADJ B 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP A 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP B 4002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NSY RELATED DB: PDB REMARK 900 RELATED ID: 2NSY RELATED DB: PDB REMARK 900 RELATED ID: 1EE1 RELATED DB: PDB REMARK 900 RELATED ID: 1IFX RELATED DB: PDB REMARK 900 RELATED ID: 1FYD RELATED DB: PDB REMARK 900 RELATED ID: 1IH8 RELATED DB: PDB DBREF 1KQP A 1 271 UNP P08164 NADE_BACSU 1 271 DBREF 1KQP B 1 271 UNP P08164 NADE_BACSU 1 271 SEQRES 1 A 271 SER MET GLN GLU LYS ILE MET ARG GLU LEU HIS VAL LYS SEQRES 2 A 271 PRO SER ILE ASP PRO LYS GLN GLU ILE GLU ASP ARG VAL SEQRES 3 A 271 ASN PHE LEU LYS GLN TYR VAL LYS LYS THR GLY ALA LYS SEQRES 4 A 271 GLY PHE VAL LEU GLY ILE SER GLY GLY GLN ASP SER THR SEQRES 5 A 271 LEU ALA GLY ARG LEU ALA GLN LEU ALA VAL GLU SER ILE SEQRES 6 A 271 ARG GLU GLU GLY GLY ASP ALA GLN PHE ILE ALA VAL ARG SEQRES 7 A 271 LEU PRO HIS GLY THR GLN GLN ASP GLU ASP ASP ALA GLN SEQRES 8 A 271 LEU ALA LEU LYS PHE ILE LYS PRO ASP LYS SER TRP LYS SEQRES 9 A 271 PHE ASP ILE LYS SER THR VAL SER ALA PHE SER ASP GLN SEQRES 10 A 271 TYR GLN GLN GLU THR GLY ASP GLN LEU THR ASP PHE ASN SEQRES 11 A 271 LYS GLY ASN VAL LYS ALA ARG THR ARG MET ILE ALA GLN SEQRES 12 A 271 TYR ALA ILE GLY GLY GLN GLU GLY LEU LEU VAL LEU GLY SEQRES 13 A 271 THR ASP HIS ALA ALA GLU ALA VAL THR GLY PHE PHE THR SEQRES 14 A 271 LYS TYR GLY ASP GLY GLY ALA ASP LEU LEU PRO LEU THR SEQRES 15 A 271 GLY LEU THR LYS ARG GLN GLY ARG THR LEU LEU LYS GLU SEQRES 16 A 271 LEU GLY ALA PRO GLU ARG LEU TYR LEU LYS GLU PRO THR SEQRES 17 A 271 ALA ASP LEU LEU ASP GLU LYS PRO GLN GLN SER ASP GLU SEQRES 18 A 271 THR GLU LEU GLY ILE SER TYR ASP GLU ILE ASP ASP TYR SEQRES 19 A 271 LEU GLU GLY LYS GLU VAL SER ALA LYS VAL SER GLU ALA SEQRES 20 A 271 LEU GLU LYS ARG TYR SER MET THR GLU HIS LYS ARG GLN SEQRES 21 A 271 VAL PRO ALA SER MET PHE ASP ASP TRP TRP LYS SEQRES 1 B 271 SER MET GLN GLU LYS ILE MET ARG GLU LEU HIS VAL LYS SEQRES 2 B 271 PRO SER ILE ASP PRO LYS GLN GLU ILE GLU ASP ARG VAL SEQRES 3 B 271 ASN PHE LEU LYS GLN TYR VAL LYS LYS THR GLY ALA LYS SEQRES 4 B 271 GLY PHE VAL LEU GLY ILE SER GLY GLY GLN ASP SER THR SEQRES 5 B 271 LEU ALA GLY ARG LEU ALA GLN LEU ALA VAL GLU SER ILE SEQRES 6 B 271 ARG GLU GLU GLY GLY ASP ALA GLN PHE ILE ALA VAL ARG SEQRES 7 B 271 LEU PRO HIS GLY THR GLN GLN ASP GLU ASP ASP ALA GLN SEQRES 8 B 271 LEU ALA LEU LYS PHE ILE LYS PRO ASP LYS SER TRP LYS SEQRES 9 B 271 PHE ASP ILE LYS SER THR VAL SER ALA PHE SER ASP GLN SEQRES 10 B 271 TYR GLN GLN GLU THR GLY ASP GLN LEU THR ASP PHE ASN SEQRES 11 B 271 LYS GLY ASN VAL LYS ALA ARG THR ARG MET ILE ALA GLN SEQRES 12 B 271 TYR ALA ILE GLY GLY GLN GLU GLY LEU LEU VAL LEU GLY SEQRES 13 B 271 THR ASP HIS ALA ALA GLU ALA VAL THR GLY PHE PHE THR SEQRES 14 B 271 LYS TYR GLY ASP GLY GLY ALA ASP LEU LEU PRO LEU THR SEQRES 15 B 271 GLY LEU THR LYS ARG GLN GLY ARG THR LEU LEU LYS GLU SEQRES 16 B 271 LEU GLY ALA PRO GLU ARG LEU TYR LEU LYS GLU PRO THR SEQRES 17 B 271 ALA ASP LEU LEU ASP GLU LYS PRO GLN GLN SER ASP GLU SEQRES 18 B 271 THR GLU LEU GLY ILE SER TYR ASP GLU ILE ASP ASP TYR SEQRES 19 B 271 LEU GLU GLY LYS GLU VAL SER ALA LYS VAL SER GLU ALA SEQRES 20 B 271 LEU GLU LYS ARG TYR SER MET THR GLU HIS LYS ARG GLN SEQRES 21 B 271 VAL PRO ALA SER MET PHE ASP ASP TRP TRP LYS HET MG A5001 1 HET MG A5002 1 HET EDO A2001 4 HET EDO A2002 4 HET EDO A2008 4 HET ADJ A3001 99 HET POP A4001 9 HET MG B5003 1 HET MG B5004 1 HET MG B5005 1 HET EDO B2003 4 HET EDO B2004 4 HET EDO B2005 4 HET EDO B2006 4 HET EDO B2007 4 HET EDO B2009 4 HET EDO B2010 4 HET ADJ B3002 99 HET POP B4002 9 HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ADJ NICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE HETNAM 2 ADJ INTERMEDIATE HETNAM POP PYROPHOSPHATE 2- HETSYN EDO ETHYLENE GLYCOL HETSYN ADJ NADP-A FORMUL 3 MG 5(MG 2+) FORMUL 5 EDO 10(C2 H6 O2) FORMUL 8 ADJ 2(C31 H44 N11 O21 P3) FORMUL 9 POP 2(H2 O7 P2 2-) FORMUL 22 HOH *714(H2 O) HELIX 1 1 SER A 1 HIS A 11 1 11 HELIX 2 2 ASP A 17 GLY A 37 1 21 HELIX 3 3 GLY A 48 GLU A 68 1 21 HELIX 4 4 ASP A 86 LYS A 98 1 13 HELIX 5 5 ILE A 107 GLY A 123 1 17 HELIX 6 6 THR A 127 GLY A 151 1 25 HELIX 7 7 HIS A 159 VAL A 164 1 6 HELIX 8 8 THR A 185 LEU A 196 1 12 HELIX 9 9 GLU A 200 LYS A 205 1 6 HELIX 10 10 SER A 219 GLY A 225 1 7 HELIX 11 11 SER A 227 GLU A 236 1 10 HELIX 12 12 SER A 241 THR A 255 1 15 HELIX 13 13 GLU A 256 GLN A 260 5 5 HELIX 14 14 SER B 1 LEU B 10 1 10 HELIX 15 15 ASP B 17 GLY B 37 1 21 HELIX 16 16 GLY B 48 GLU B 68 1 21 HELIX 17 17 ASP B 86 LYS B 98 1 13 HELIX 18 18 ILE B 107 GLY B 123 1 17 HELIX 19 19 THR B 127 GLY B 151 1 25 HELIX 20 20 HIS B 159 VAL B 164 1 6 HELIX 21 21 THR B 185 LEU B 196 1 12 HELIX 22 22 PRO B 199 LEU B 204 1 6 HELIX 23 23 SER B 219 GLY B 225 1 7 HELIX 24 24 SER B 227 GLU B 236 1 10 HELIX 25 25 SER B 241 THR B 255 1 15 HELIX 26 26 GLU B 256 GLN B 260 5 5 SHEET 1 A 4 LYS A 101 LYS A 104 0 SHEET 2 A 4 GLN A 73 ARG A 78 1 N ALA A 76 O TRP A 103 SHEET 3 A 4 GLY A 40 GLY A 44 1 N PHE A 41 O ILE A 75 SHEET 4 A 4 LEU A 153 VAL A 154 1 O LEU A 153 N VAL A 42 SHEET 1 B 4 LYS B 101 LYS B 104 0 SHEET 2 B 4 GLN B 73 ARG B 78 1 N ALA B 76 O TRP B 103 SHEET 3 B 4 GLY B 40 GLY B 44 1 N PHE B 41 O ILE B 75 SHEET 4 B 4 LEU B 153 VAL B 154 1 O LEU B 153 N VAL B 42 LINK OD2 ASP A 50 MG MG A5001 1555 1555 2.07 LINK OE1 GLU A 162 MG MG A5001 1555 1555 2.15 LINK O THR A 208 MG MG A5002 1555 1555 2.16 LINK O1P ADJ A3001 MG MG A5001 1555 1555 2.11 LINK O3P ADJ A3001 MG MG A5002 1555 1555 2.03 LINK O2 POP A4001 MG MG A5001 1555 1555 2.09 LINK O4 POP A4001 MG MG A5001 1555 1555 2.03 LINK O3 POP A4001 MG MG A5002 1555 1555 2.05 LINK O6 POP A4001 MG MG A5002 1555 1555 2.05 LINK MG MG A5001 O HOH A6037 1555 1555 2.04 LINK MG MG A5002 O HOH A6075 1555 1555 2.06 LINK MG MG A5002 O HOH A6234 1555 1555 2.10 LINK OD2 ASP B 50 MG MG B5004 1555 1555 2.10 LINK OD1 ASP B 124 MG MG B5005 1555 1555 2.03 LINK OE2 GLU B 162 MG MG B5004 1555 1555 2.17 LINK O THR B 208 MG MG B5003 1555 1555 2.13 LINK O3P ADJ B3002 MG MG B5003 1555 1555 2.04 LINK O1P ADJ B3002 MG MG B5004 1555 1555 2.12 LINK O6 POP B4002 MG MG B5003 1555 1555 2.05 LINK O3 POP B4002 MG MG B5003 1555 1555 2.01 LINK O4 POP B4002 MG MG B5004 1555 1555 2.04 LINK O2 POP B4002 MG MG B5004 1555 1555 2.09 LINK MG MG B5003 O HOH B6039 1555 1555 2.10 LINK MG MG B5003 O HOH B6043 1555 1555 2.06 LINK MG MG B5004 O HOH B6019 1555 1555 2.07 LINK MG MG B5005 O HOH B6061 1555 1555 2.03 LINK MG MG B5005 O HOH B6073 1555 1555 2.07 LINK MG MG B5005 O HOH B6122 1555 1555 2.13 LINK MG MG B5005 O HOH B6149 1555 1556 2.07 LINK MG MG B5005 O HOH B6156 1555 1556 2.06 SITE 1 AC1 5 ASP A 50 GLU A 162 ADJ A3001 POP A4001 SITE 2 AC1 5 HOH A6037 SITE 1 AC2 5 THR A 208 ADJ A3001 POP A4001 HOH A6075 SITE 2 AC2 5 HOH A6234 SITE 1 AC3 5 THR B 208 ADJ B3002 POP B4002 HOH B6039 SITE 2 AC3 5 HOH B6043 SITE 1 AC4 5 ASP B 50 GLU B 162 ADJ B3002 POP B4002 SITE 2 AC4 5 HOH B6019 SITE 1 AC5 6 ASP B 124 HOH B6061 HOH B6073 HOH B6122 SITE 2 AC5 6 HOH B6149 HOH B6156 SITE 1 AC6 6 GLY A 225 GLU A 230 LYS A 243 EDO A2002 SITE 2 AC6 6 HOH A6337 HOH B6188 SITE 1 AC7 8 GLU A 221 GLY A 225 ILE A 226 GLU A 230 SITE 2 AC7 8 EDO A2001 HOH A6402 HOH B6073 HOH B6218 SITE 1 AC8 6 HOH A6402 GLY B 123 LYS B 194 GLU B 195 SITE 2 AC8 6 HOH B6137 HOH B6471 SITE 1 AC9 5 ARG B 56 PHE B 96 LYS B 98 HOH B6573 SITE 2 AC9 5 HOH B6596 SITE 1 BC1 8 HOH A6612 GLU B 23 VAL B 26 ASN B 27 SITE 2 BC1 8 SER B 64 EDO B2006 HOH B6233 HOH B6489 SITE 1 BC2 6 GLN A 91 LYS B 30 SER B 64 GLU B 67 SITE 2 BC2 6 GLU B 68 EDO B2005 SITE 1 BC3 4 GLU A 121 HOH A6116 TRP B 103 LYS B 104 SITE 1 BC4 7 PRO A 262 HOH A6031 HOH A6298 HOH A6354 SITE 2 BC4 7 ASP B 158 PHE B 168 GLY B 174 SITE 1 BC5 7 LEU A 179 HOH A6428 VAL B 261 PRO B 262 SITE 2 BC5 7 SER B 264 ASP B 267 HOH B6325 SITE 1 BC6 4 ARG B 56 GLN B 59 GLU B 63 LYS B 98 SITE 1 BC7 51 LEU A 43 GLY A 44 ILE A 45 SER A 46 SITE 2 BC7 51 SER A 51 ARG A 78 LEU A 79 GLN A 84 SITE 3 BC7 51 PHE A 129 ASN A 133 ARG A 137 ARG A 139 SITE 4 BC7 51 THR A 157 GLU A 162 PHE A 167 PHE A 168 SITE 5 BC7 51 THR A 169 LYS A 170 ASP A 173 THR A 208 SITE 6 BC7 51 ALA A 209 LEU A 211 GLU A 223 HIS A 257 SITE 7 BC7 51 LYS A 258 POP A4001 MG A5001 MG A5002 SITE 8 BC7 51 HOH A6001 HOH A6002 HOH A6005 HOH A6037 SITE 9 BC7 51 HOH A6098 HOH A6181 HOH A6184 HOH A6204 SITE 10 BC7 51 HOH A6216 HOH A6234 HOH A6235 HOH A6271 SITE 11 BC7 51 HOH A6452 HOH A6595 HOH A6621 HOH A6631 SITE 12 BC7 51 TYR B 32 THR B 36 TYR B 144 LEU B 153 SITE 13 BC7 51 ASP B 177 HOH B6093 HOH B6359 SITE 1 BC8 50 TYR A 32 THR A 36 TYR A 144 LEU A 153 SITE 2 BC8 50 ASP A 177 HOH A6135 LEU B 43 GLY B 44 SITE 3 BC8 50 ILE B 45 SER B 46 SER B 51 ARG B 78 SITE 4 BC8 50 LEU B 79 GLN B 84 ASN B 133 ARG B 137 SITE 5 BC8 50 ARG B 139 THR B 157 GLU B 162 PHE B 167 SITE 6 BC8 50 PHE B 168 THR B 169 LYS B 170 ASP B 173 SITE 7 BC8 50 THR B 208 ALA B 209 LEU B 211 GLU B 223 SITE 8 BC8 50 HIS B 257 LYS B 258 POP B4002 MG B5003 SITE 9 BC8 50 MG B5004 HOH B6003 HOH B6004 HOH B6006 SITE 10 BC8 50 HOH B6019 HOH B6039 HOH B6136 HOH B6178 SITE 11 BC8 50 HOH B6200 HOH B6214 HOH B6295 HOH B6339 SITE 12 BC8 50 HOH B6435 HOH B6580 HOH B6583 HOH B6634 SITE 13 BC8 50 HOH B6667 HOH B6708 SITE 1 BC9 17 SER A 46 GLY A 48 GLN A 49 ASP A 50 SITE 2 BC9 17 SER A 51 GLU A 162 LYS A 186 PRO A 207 SITE 3 BC9 17 THR A 208 ADJ A3001 MG A5001 MG A5002 SITE 4 BC9 17 HOH A6005 HOH A6037 HOH A6041 HOH A6075 SITE 5 BC9 17 HOH A6234 SITE 1 CC1 17 SER B 46 GLY B 48 GLN B 49 ASP B 50 SITE 2 CC1 17 SER B 51 GLU B 162 LYS B 186 PRO B 207 SITE 3 CC1 17 THR B 208 ADJ B3002 MG B5003 MG B5004 SITE 4 CC1 17 HOH B6006 HOH B6015 HOH B6019 HOH B6039 SITE 5 CC1 17 HOH B6043 CRYST1 52.280 84.790 59.640 90.00 110.50 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019128 0.000000 0.007152 0.00000 SCALE2 0.000000 0.011794 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017901 0.00000