PDB Short entry for 1KWZ HEADER IMMUNE SYSTEM, SUGAR BINDING PROTEIN 30-JAN-02 1KWZ TITLE RAT MANNOSE PROTEIN A (H189V) COMPLEXED WITH MAN-A13-MAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSE-BINDING PROTEIN A; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 90-238 OF P19999; COMPND 5 SYNONYM: MBP-A; MANNAN-BINDING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: MBL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LECTIN, C-TYPE LECTIN, CALCIUM-BINDING PROTEIN, IMMUNE SYSTEM, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.K.NG,A.R.KOLATKAR,S.PARK-SNYDER,H.FEINBERG,D.A.CLARK,K.DRICKAMER, AUTHOR 2 W.I.WEIS REVDAT 5 27-OCT-21 1KWZ 1 SEQADV HETSYN REVDAT 4 29-JUL-20 1KWZ 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 24-FEB-09 1KWZ 1 VERSN REVDAT 2 01-APR-03 1KWZ 1 JRNL REVDAT 1 05-JUL-02 1KWZ 0 JRNL AUTH K.K.NG,A.R.KOLATKAR,S.PARK-SNYDER,H.FEINBERG,D.A.CLARK, JRNL AUTH 2 K.DRICKAMER,W.I.WEIS JRNL TITL ORIENTATION OF BOUND LIGANDS IN MANNOSE-BINDING PROTEINS. JRNL TITL 2 IMPLICATIONS FOR MULTIVALENT LIGAND RECOGNITION. JRNL REF J.BIOL.CHEM. V. 277 16088 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11850428 JRNL DOI 10.1074/JBC.M200493200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 46700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4717 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3450 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 323 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1KWZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1000015425. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46700 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-13% PEG 8000 OR 3500, 100MM TRIS-CL REMARK 280 PH=8.0, 10MM NACL, 20MM CACL2, 2MM NAN3. PROTEIN SOLUTION: 12MG/ REMARK 280 ML IN 10 MM NACL, 10MM CACL2, 200MM MAN-A13-MAN. VAPOR DIFFUSION, REMARK 280 HANGING DROP AT 298K, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.67500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.52500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.67500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.52500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -183.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 195 CB CYS A 195 SG 0.146 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 152 -27.82 75.75 REMARK 500 THR A 177 -96.08 -112.13 REMARK 500 ASN A 180 51.61 -144.54 REMARK 500 ASP A 188 53.37 38.07 REMARK 500 VAL A 199 -130.67 -120.19 REMARK 500 PRO A 220 151.18 -48.64 REMARK 500 LYS B 152 -42.81 75.82 REMARK 500 THR B 153 -169.67 -117.34 REMARK 500 THR B 177 -79.13 -93.38 REMARK 500 ASN B 180 55.20 -145.75 REMARK 500 ASP B 184 15.43 80.20 REMARK 500 ASP B 188 48.02 35.95 REMARK 500 VAL B 199 -141.54 -114.98 REMARK 500 LYS C 152 -36.94 72.11 REMARK 500 THR C 177 -113.59 -82.34 REMARK 500 ASN C 180 51.59 -145.10 REMARK 500 ASP C 184 -3.18 76.45 REMARK 500 ASP C 200 41.93 -83.01 REMARK 500 ASN C 201 -16.24 -150.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 84 OE1 REMARK 620 2 GLU A 165 OE1 89.6 REMARK 620 3 ASP A 194 OD2 155.6 72.6 REMARK 620 4 ASP A 194 OD1 152.1 118.2 49.6 REMARK 620 5 HOH A 509 O 93.1 92.3 104.0 83.2 REMARK 620 6 HOH A 531 O 76.1 165.1 122.3 76.1 84.5 REMARK 620 7 HOH A 547 O 95.6 92.5 69.4 86.9 170.1 92.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 161 OD2 REMARK 620 2 ASP A 161 OD1 51.6 REMARK 620 3 GLU A 165 OE1 77.5 103.1 REMARK 620 4 GLU A 165 OE2 71.5 122.3 50.1 REMARK 620 5 ASP A 188 OD2 147.5 159.8 81.7 75.9 REMARK 620 6 GLU A 193 O 131.8 87.0 143.5 147.4 78.3 REMARK 620 7 ASP A 194 OD2 106.4 73.6 71.0 120.6 89.9 78.6 REMARK 620 8 HOH A 515 O 86.8 99.6 134.4 84.4 90.2 76.1 154.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 185 OE2 REMARK 620 2 ASN A 187 OD1 71.9 REMARK 620 3 GLU A 193 OE2 145.7 76.0 REMARK 620 4 ASN A 205 OD1 70.4 139.0 143.7 REMARK 620 5 ASP A 206 O 132.1 141.6 71.1 77.9 REMARK 620 6 ASP A 206 OD2 75.6 83.9 89.6 101.5 76.8 REMARK 620 7 MAN D 2 O3 128.7 117.0 77.0 76.7 74.2 150.7 REMARK 620 8 MAN D 2 O4 75.8 79.7 110.0 76.2 130.0 150.2 58.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 161 OD2 REMARK 620 2 ASP B 161 OD1 51.8 REMARK 620 3 GLU B 165 OE1 78.5 109.4 REMARK 620 4 GLU B 165 OE2 70.1 121.9 50.6 REMARK 620 5 ASP B 188 OD2 151.3 153.3 77.1 82.7 REMARK 620 6 GLU B 193 O 133.9 88.7 144.6 142.0 74.1 REMARK 620 7 ASP B 194 OD2 105.5 73.6 76.6 127.1 83.2 80.0 REMARK 620 8 HOH B 612 O 91.5 103.8 126.9 76.8 91.2 74.1 154.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 165 OE1 REMARK 620 2 ASP B 194 OD2 81.6 REMARK 620 3 ASP B 194 OD1 126.4 50.3 REMARK 620 4 HOH B 611 O 93.1 108.6 83.5 REMARK 620 5 HOH B 618 O 84.0 152.7 149.5 95.2 REMARK 620 6 HOH B 639 O 87.9 72.7 96.8 178.4 83.8 REMARK 620 7 HOH B 647 O 162.3 111.0 70.4 94.3 79.4 84.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 185 OE2 REMARK 620 2 ASN B 187 OD1 73.8 REMARK 620 3 GLU B 193 OE2 142.3 75.7 REMARK 620 4 ASN B 205 OD1 68.0 137.3 146.8 REMARK 620 5 ASP B 206 O 127.4 140.0 68.8 80.6 REMARK 620 6 ASP B 206 OD2 71.3 87.6 85.8 97.3 72.3 REMARK 620 7 MAN E 2 O4 139.1 117.0 75.4 83.0 71.4 143.2 REMARK 620 8 MAN E 2 O3 80.2 75.3 112.7 80.1 135.4 150.0 66.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 705 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 84 OE2 REMARK 620 2 GLU C 165 OE1 86.1 REMARK 620 3 ASP C 194 OD1 148.5 120.9 REMARK 620 4 ASP C 194 OD2 159.6 74.5 51.6 REMARK 620 5 HOH C 707 O 96.8 84.4 101.4 75.5 REMARK 620 6 HOH C 709 O 84.7 88.3 80.6 100.6 172.4 REMARK 620 7 HOH C 711 O 79.0 164.6 72.4 120.7 101.2 86.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 161 OD2 REMARK 620 2 ASP C 161 OD1 49.0 REMARK 620 3 GLU C 165 OE1 79.4 106.3 REMARK 620 4 GLU C 165 OE2 72.4 120.9 48.7 REMARK 620 5 ASP C 188 OD2 147.6 161.2 76.7 75.4 REMARK 620 6 GLU C 193 O 131.0 91.0 147.1 141.3 78.4 REMARK 620 7 ASP C 194 OD2 105.7 74.8 74.2 122.7 88.6 84.2 REMARK 620 8 HOH C 708 O 81.7 99.2 124.2 75.5 93.8 78.4 161.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 704 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 185 OE2 REMARK 620 2 ASN C 187 OD1 68.8 REMARK 620 3 GLU C 193 OE2 147.8 80.9 REMARK 620 4 ASN C 205 OD1 69.0 136.4 142.5 REMARK 620 5 ASP C 206 O 130.5 143.6 70.7 75.9 REMARK 620 6 ASP C 206 OD2 80.1 85.2 87.0 98.1 71.4 REMARK 620 7 MAN F 2 O4 78.6 74.7 104.3 86.5 133.4 154.8 REMARK 620 8 MAN F 2 O3 129.7 123.5 76.2 77.7 71.6 142.7 62.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KWT RELATED DB: PDB REMARK 900 RELATED ID: 1KWU RELATED DB: PDB REMARK 900 RELATED ID: 1KWV RELATED DB: PDB REMARK 900 RELATED ID: 1KWW RELATED DB: PDB REMARK 900 RELATED ID: 1KWX RELATED DB: PDB REMARK 900 RELATED ID: 1KWY RELATED DB: PDB REMARK 900 RELATED ID: 1KX0 RELATED DB: PDB REMARK 900 RELATED ID: 1KX1 RELATED DB: PDB DBREF 1KWZ A 73 221 UNP P19999 MABA_RAT 90 238 DBREF 1KWZ B 73 221 UNP P19999 MABA_RAT 90 238 DBREF 1KWZ C 73 221 UNP P19999 MABA_RAT 90 238 SEQADV 1KWZ VAL A 189 UNP P19999 HIS 206 ENGINEERED MUTATION SEQADV 1KWZ VAL B 189 UNP P19999 HIS 206 ENGINEERED MUTATION SEQADV 1KWZ VAL C 189 UNP P19999 HIS 206 ENGINEERED MUTATION SEQRES 1 A 149 ALA ILE GLU VAL LYS LEU ALA ASN MET GLU ALA GLU ILE SEQRES 2 A 149 ASN THR LEU LYS SER LYS LEU GLU LEU THR ASN LYS LEU SEQRES 3 A 149 HIS ALA PHE SER MET GLY LYS LYS SER GLY LYS LYS PHE SEQRES 4 A 149 PHE VAL THR ASN HIS GLU ARG MET PRO PHE SER LYS VAL SEQRES 5 A 149 LYS ALA LEU CYS SER GLU LEU ARG GLY THR VAL ALA ILE SEQRES 6 A 149 PRO ARG ASN ALA GLU GLU ASN LYS ALA ILE GLN GLU VAL SEQRES 7 A 149 ALA LYS THR SER ALA PHE LEU GLY ILE THR ASP GLU VAL SEQRES 8 A 149 THR GLU GLY GLN PHE MET TYR VAL THR GLY GLY ARG LEU SEQRES 9 A 149 THR TYR SER ASN TRP LYS LYS ASP GLU PRO ASN ASP VAL SEQRES 10 A 149 GLY SER GLY GLU ASP CYS VAL THR ILE VAL ASP ASN GLY SEQRES 11 A 149 LEU TRP ASN ASP ILE SER CYS GLN ALA SER HIS THR ALA SEQRES 12 A 149 VAL CYS GLU PHE PRO ALA SEQRES 1 B 149 ALA ILE GLU VAL LYS LEU ALA ASN MET GLU ALA GLU ILE SEQRES 2 B 149 ASN THR LEU LYS SER LYS LEU GLU LEU THR ASN LYS LEU SEQRES 3 B 149 HIS ALA PHE SER MET GLY LYS LYS SER GLY LYS LYS PHE SEQRES 4 B 149 PHE VAL THR ASN HIS GLU ARG MET PRO PHE SER LYS VAL SEQRES 5 B 149 LYS ALA LEU CYS SER GLU LEU ARG GLY THR VAL ALA ILE SEQRES 6 B 149 PRO ARG ASN ALA GLU GLU ASN LYS ALA ILE GLN GLU VAL SEQRES 7 B 149 ALA LYS THR SER ALA PHE LEU GLY ILE THR ASP GLU VAL SEQRES 8 B 149 THR GLU GLY GLN PHE MET TYR VAL THR GLY GLY ARG LEU SEQRES 9 B 149 THR TYR SER ASN TRP LYS LYS ASP GLU PRO ASN ASP VAL SEQRES 10 B 149 GLY SER GLY GLU ASP CYS VAL THR ILE VAL ASP ASN GLY SEQRES 11 B 149 LEU TRP ASN ASP ILE SER CYS GLN ALA SER HIS THR ALA SEQRES 12 B 149 VAL CYS GLU PHE PRO ALA SEQRES 1 C 149 ALA ILE GLU VAL LYS LEU ALA ASN MET GLU ALA GLU ILE SEQRES 2 C 149 ASN THR LEU LYS SER LYS LEU GLU LEU THR ASN LYS LEU SEQRES 3 C 149 HIS ALA PHE SER MET GLY LYS LYS SER GLY LYS LYS PHE SEQRES 4 C 149 PHE VAL THR ASN HIS GLU ARG MET PRO PHE SER LYS VAL SEQRES 5 C 149 LYS ALA LEU CYS SER GLU LEU ARG GLY THR VAL ALA ILE SEQRES 6 C 149 PRO ARG ASN ALA GLU GLU ASN LYS ALA ILE GLN GLU VAL SEQRES 7 C 149 ALA LYS THR SER ALA PHE LEU GLY ILE THR ASP GLU VAL SEQRES 8 C 149 THR GLU GLY GLN PHE MET TYR VAL THR GLY GLY ARG LEU SEQRES 9 C 149 THR TYR SER ASN TRP LYS LYS ASP GLU PRO ASN ASP VAL SEQRES 10 C 149 GLY SER GLY GLU ASP CYS VAL THR ILE VAL ASP ASN GLY SEQRES 11 C 149 LEU TRP ASN ASP ILE SER CYS GLN ALA SER HIS THR ALA SEQRES 12 C 149 VAL CYS GLU PHE PRO ALA HET MAN D 1 12 HET MAN D 2 11 HET MAN E 1 12 HET MAN E 2 11 HET MAN F 1 12 HET MAN F 2 11 HET CA A 503 1 HET CA A 504 1 HET CA A 505 1 HET CL A 506 1 HET CA B 603 1 HET CA B 604 1 HET CA B 605 1 HET CL B 606 1 HET CA C 703 1 HET CA C 704 1 HET CA C 705 1 HET CL C 706 1 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 MAN 6(C6 H12 O6) FORMUL 7 CA 9(CA 2+) FORMUL 10 CL 3(CL 1-) FORMUL 19 HOH *323(H2 O) HELIX 1 1 ALA A 73 MET A 103 1 31 HELIX 2 2 PRO A 120 LEU A 131 1 12 HELIX 3 3 ASN A 140 LYS A 152 1 13 HELIX 4 4 ASP A 200 GLY A 202 5 3 HELIX 5 5 ALA B 73 MET B 103 1 31 HELIX 6 6 PHE B 121 LEU B 131 1 11 HELIX 7 7 ASN B 140 LYS B 152 1 13 HELIX 8 8 ASP B 200 GLY B 202 5 3 HELIX 9 9 ALA C 73 GLY C 104 1 32 HELIX 10 10 PRO C 120 LEU C 131 1 12 HELIX 11 11 ASN C 140 LYS C 152 1 13 SHEET 1 A 3 PHE A 111 MET A 119 0 SHEET 2 A 3 HIS A 213 PHE A 219 -1 O CYS A 217 N VAL A 113 SHEET 3 A 3 THR A 134 VAL A 135 -1 N THR A 134 O GLU A 218 SHEET 1 B 4 MET A 169 TYR A 170 0 SHEET 2 B 4 ALA A 155 THR A 160 -1 N THR A 160 O MET A 169 SHEET 3 B 4 CYS A 195 ILE A 198 -1 O ILE A 198 N ALA A 155 SHEET 4 B 4 TRP A 204 ILE A 207 -1 O ILE A 207 N CYS A 195 SHEET 1 C 3 PHE B 111 PRO B 120 0 SHEET 2 C 3 SER B 212 PHE B 219 -1 O CYS B 217 N VAL B 113 SHEET 3 C 3 THR B 134 VAL B 135 -1 N THR B 134 O GLU B 218 SHEET 1 D 4 MET B 169 TYR B 170 0 SHEET 2 D 4 ALA B 155 THR B 160 -1 N THR B 160 O MET B 169 SHEET 3 D 4 CYS B 195 ILE B 198 -1 O ILE B 198 N ALA B 155 SHEET 4 D 4 TRP B 204 ILE B 207 -1 O ILE B 207 N CYS B 195 SHEET 1 E 3 PHE C 111 MET C 119 0 SHEET 2 E 3 HIS C 213 PHE C 219 -1 O CYS C 217 N VAL C 113 SHEET 3 E 3 THR C 134 VAL C 135 -1 N THR C 134 O GLU C 218 SHEET 1 F 4 MET C 169 TYR C 170 0 SHEET 2 F 4 ALA C 155 THR C 160 -1 N THR C 160 O MET C 169 SHEET 3 F 4 CYS C 195 ILE C 198 -1 O ILE C 198 N ALA C 155 SHEET 4 F 4 TRP C 204 ILE C 207 -1 O ASN C 205 N THR C 197 SSBOND 1 CYS A 128 CYS A 217 1555 1555 2.04 SSBOND 2 CYS A 195 CYS A 209 1555 1555 2.02 SSBOND 3 CYS B 128 CYS B 217 1555 1555 2.02 SSBOND 4 CYS B 195 CYS B 209 1555 1555 2.04 SSBOND 5 CYS C 128 CYS C 217 1555 1555 2.03 SSBOND 6 CYS C 195 CYS C 209 1555 1555 2.03 LINK O3 MAN D 1 C1 MAN D 2 1555 1555 1.40 LINK O3 MAN E 1 C1 MAN E 2 1555 1555 1.40 LINK O3 MAN F 1 C1 MAN F 2 1555 1555 1.41 LINK OE1 GLU A 84 CA CA A 505 3545 1555 2.26 LINK OD2 ASP A 161 CA CA A 503 1555 1555 2.40 LINK OD1 ASP A 161 CA CA A 503 1555 1555 2.65 LINK OE1 GLU A 165 CA CA A 503 1555 1555 2.63 LINK OE2 GLU A 165 CA CA A 503 1555 1555 2.52 LINK OE1 GLU A 165 CA CA A 505 1555 1555 2.26 LINK OE2 GLU A 185 CA CA A 504 1555 1555 2.62 LINK OD1 ASN A 187 CA CA A 504 1555 1555 2.44 LINK OD2 ASP A 188 CA CA A 503 1555 1555 2.41 LINK O GLU A 193 CA CA A 503 1555 1555 2.40 LINK OE2 GLU A 193 CA CA A 504 1555 1555 2.46 LINK OD2 ASP A 194 CA CA A 503 1555 1555 2.45 LINK OD2 ASP A 194 CA CA A 505 1555 1555 2.70 LINK OD1 ASP A 194 CA CA A 505 1555 1555 2.49 LINK OD1 ASN A 205 CA CA A 504 1555 1555 2.41 LINK O ASP A 206 CA CA A 504 1555 1555 2.49 LINK OD2 ASP A 206 CA CA A 504 1555 1555 2.29 LINK CA CA A 503 O HOH A 515 1555 1555 2.28 LINK CA CA A 504 O3 MAN D 2 1555 1555 2.78 LINK CA CA A 504 O4 MAN D 2 1555 1555 2.90 LINK CA CA A 505 O HOH A 509 1555 3545 2.30 LINK CA CA A 505 O HOH A 531 1555 3545 2.42 LINK CA CA A 505 O HOH A 547 1555 1555 2.34 LINK OD2 ASP B 161 CA CA B 603 1555 1555 2.38 LINK OD1 ASP B 161 CA CA B 603 1555 1555 2.63 LINK OE1 GLU B 165 CA CA B 603 1555 1555 2.62 LINK OE2 GLU B 165 CA CA B 603 1555 1555 2.55 LINK OE1 GLU B 165 CA CA B 605 1555 1555 2.30 LINK OE2 GLU B 185 CA CA B 604 1555 1555 2.44 LINK OD1 ASN B 187 CA CA B 604 1555 1555 2.51 LINK OD2 ASP B 188 CA CA B 603 1555 1555 2.61 LINK O GLU B 193 CA CA B 603 1555 1555 2.43 LINK OE2 GLU B 193 CA CA B 604 1555 1555 2.49 LINK OD2 ASP B 194 CA CA B 603 1555 1555 2.45 LINK OD2 ASP B 194 CA CA B 605 1555 1555 2.52 LINK OD1 ASP B 194 CA CA B 605 1555 1555 2.63 LINK OD1 ASN B 205 CA CA B 604 1555 1555 2.52 LINK O ASP B 206 CA CA B 604 1555 1555 2.56 LINK OD2 ASP B 206 CA CA B 604 1555 1555 2.37 LINK CA CA B 603 O HOH B 612 1555 1555 2.29 LINK CA CA B 604 O4 MAN E 2 1555 1555 2.61 LINK CA CA B 604 O3 MAN E 2 1555 1555 2.55 LINK CA CA B 605 O HOH B 611 1555 1555 2.28 LINK CA CA B 605 O HOH B 618 1555 1555 2.32 LINK CA CA B 605 O HOH B 639 1555 1555 2.46 LINK CA CA B 605 O HOH B 647 1555 1555 2.55 LINK OE2 GLU C 84 CA CA C 705 3555 1555 2.41 LINK OD2 ASP C 161 CA CA C 703 1555 1555 2.59 LINK OD1 ASP C 161 CA CA C 703 1555 1555 2.73 LINK OE1 GLU C 165 CA CA C 703 1555 1555 2.59 LINK OE2 GLU C 165 CA CA C 703 1555 1555 2.71 LINK OE1 GLU C 165 CA CA C 705 1555 1555 2.41 LINK OE2 GLU C 185 CA CA C 704 1555 1555 2.49 LINK OD1 ASN C 187 CA CA C 704 1555 1555 2.37 LINK OD2 ASP C 188 CA CA C 703 1555 1555 2.42 LINK O GLU C 193 CA CA C 703 1555 1555 2.23 LINK OE2 GLU C 193 CA CA C 704 1555 1555 2.42 LINK OD2 ASP C 194 CA CA C 703 1555 1555 2.37 LINK OD1 ASP C 194 CA CA C 705 1555 1555 2.53 LINK OD2 ASP C 194 CA CA C 705 1555 1555 2.53 LINK OD1 ASN C 205 CA CA C 704 1555 1555 2.48 LINK O ASP C 206 CA CA C 704 1555 1555 2.51 LINK OD2 ASP C 206 CA CA C 704 1555 1555 2.07 LINK CA CA C 703 O HOH C 708 1555 1555 2.34 LINK CA CA C 704 O4 MAN F 2 1555 1555 2.77 LINK CA CA C 704 O3 MAN F 2 1555 1555 2.65 LINK CA CA C 705 O HOH C 707 1555 1555 2.21 LINK CA CA C 705 O HOH C 709 1555 1555 2.41 LINK CA CA C 705 O HOH C 711 1555 1555 2.42 CISPEP 1 GLU A 185 PRO A 186 0 -0.49 CISPEP 2 GLU B 185 PRO B 186 0 -0.41 CISPEP 3 GLU C 185 PRO C 186 0 -0.24 CRYST1 79.350 85.050 98.160 90.00 106.90 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012602 0.000000 0.003829 0.00000 SCALE2 0.000000 0.011758 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010647 0.00000