PDB Short entry for 1L1O HEADER DNA BINDING PROTEIN 19-FEB-02 1L1O TITLE STRUCTURE OF THE HUMAN REPLICATION PROTEIN A (RPA) TRIMERIZATION CORE COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICATION PROTEIN A 14 KDA SUBUNIT; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: RPA14; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: REPLICATION PROTEIN A 32 KDA SUBUNIT; COMPND 8 CHAIN: B, E; COMPND 9 FRAGMENT: RPA32 CENTRAL DOMAIN (RESIDUES 44-171); COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT; COMPND 13 CHAIN: C, F; COMPND 14 FRAGMENT: RPA70 C-TERMINAL DOMAIN (RESIDUES 436-616); COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RFA3_HUMAN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET15B; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B 3-CORE; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: RFA2_HUMAN; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PET15B; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET15B 3-CORE; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 GENE: RFA1_HUMAN; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 27 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: PET15B; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PET15B 3-CORE KEYWDS EUKARYOTIC SSB, SSDNA BINDING PROTEIN, OB-FOLD, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.V.BOCHKAREVA,S.KOROLEV,S.P.LEES-MILLER,A.BOCHKAREV REVDAT 4 14-FEB-24 1L1O 1 REMARK LINK REVDAT 3 24-FEB-09 1L1O 1 VERSN REVDAT 2 01-APR-03 1L1O 1 JRNL REVDAT 1 05-JUN-02 1L1O 0 JRNL AUTH E.BOCHKAREVA,S.KOROLEV,S.P.LEES-MILLER,A.BOCHKAREV JRNL TITL STRUCTURE OF THE RPA TRIMERIZATION CORE AND ITS ROLE IN THE JRNL TITL 2 MULTISTEP DNA-BINDING MECHANISM OF RPA. JRNL REF EMBO J. V. 21 1855 2002 JRNL REFN ISSN 0261-4189 JRNL PMID 11927569 JRNL DOI 10.1093/EMBOJ/21.7.1855 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.BOCHKAREVA,S.KOROLEV,A.BOCHKAREV REMARK 1 TITL THE ROLE FOR ZINC IN REPLICATION PROTEIN A. REMARK 1 REF J.BIOL.CHEM. V. 275 27332 2000 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 584448.250 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 36244 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 3681 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4374 REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 511 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6567 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : 0.86000 REMARK 3 B33 (A**2) : -1.71000 REMARK 3 B12 (A**2) : 7.77000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.47 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.61 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 2.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.410 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.710 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.500 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.210 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.810 ; 3.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 39.92 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : &_1_PARAMETER_INFILE_3 REMARK 3 PARAMETER FILE 4 : &_1_PARAMETER_INFILE_4 REMARK 3 PARAMETER FILE 5 : &_1_PARAMETER_INFILE_5 REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : &_1_TOPOLOGY_INFILE_3 REMARK 3 TOPOLOGY FILE 4 : &_1_TOPOLOGY_INFILE_4 REMARK 3 TOPOLOGY FILE 5 : &_1_TOPOLOGY_INFILE_5 REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1L1O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1000015562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-99; 05-SEP-99 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 19-ID; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.008; 0.979 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43573 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.53200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 9% GLYCEROL, AND 1.6 M REMARK 280 AMMONIUM SULFATE, PH 7.8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.69667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 227.39333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 227.39333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 113.69667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: RPA IS A HETEROTRIMER MADE OF RPA70, RPA32, AND RPA14 REMARK 300 SUBUNITS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 VAL A 118 REMARK 465 GLN A 119 REMARK 465 HIS A 120 REMARK 465 ASP A 121 REMARK 465 ASP B 112 REMARK 465 THR B 113 REMARK 465 SER B 114 REMARK 465 SER B 115 REMARK 465 GLU B 116 REMARK 465 GLY C 436 REMARK 465 GLY C 437 REMARK 465 SER C 438 REMARK 465 ASN C 582 REMARK 465 ASP C 583 REMARK 465 GLU C 584 REMARK 465 SER C 585 REMARK 465 ARG C 586 REMARK 465 MET D 1 REMARK 465 VAL D 2 REMARK 465 VAL D 118 REMARK 465 GLN D 119 REMARK 465 HIS D 120 REMARK 465 ASP D 121 REMARK 465 ASP E 112 REMARK 465 THR E 113 REMARK 465 SER E 114 REMARK 465 SER E 115 REMARK 465 GLU E 116 REMARK 465 GLY F 436 REMARK 465 GLY F 437 REMARK 465 SER F 438 REMARK 465 THR F 580 REMARK 465 TYR F 581 REMARK 465 ASN F 582 REMARK 465 ASP F 583 REMARK 465 GLU F 584 REMARK 465 SER F 585 REMARK 465 ARG F 586 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 171 CG CD CE NZ REMARK 470 LYS E 171 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN F 475 N MET F 477 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 58 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 PRO B 87 C - N - CA ANGL. DEV. = -9.8 DEGREES REMARK 500 ALA B 143 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 CYS F 486 N - CA - C ANGL. DEV. = -20.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 17 -39.76 -34.24 REMARK 500 HIS A 35 156.18 -44.47 REMARK 500 THR A 37 27.20 -70.52 REMARK 500 ASP A 45 -167.90 -67.43 REMARK 500 ASP A 60 -80.33 -76.75 REMARK 500 SER A 64 154.24 162.92 REMARK 500 LYS A 76 30.93 -90.02 REMARK 500 ASP A 90 -8.88 -51.76 REMARK 500 TYR A 113 78.33 -166.73 REMARK 500 LEU A 115 37.14 -154.04 REMARK 500 LEU B 59 41.60 -100.57 REMARK 500 SER B 72 -82.55 -112.38 REMARK 500 ALA B 86 -160.60 61.30 REMARK 500 MET B 97 -16.94 62.41 REMARK 500 ALA B 99 -179.31 -178.55 REMARK 500 ASN B 137 -15.60 85.03 REMARK 500 ILE B 146 81.76 -151.81 REMARK 500 LYS C 449 -73.57 -64.03 REMARK 500 ASN C 452 46.39 73.48 REMARK 500 ASP C 457 -88.90 -10.42 REMARK 500 PRO C 459 -176.93 -64.93 REMARK 500 GLU C 474 -89.06 -68.10 REMARK 500 CYS C 476 -20.00 -38.11 REMARK 500 LYS C 488 159.40 -48.56 REMARK 500 GLN C 494 -10.00 -41.54 REMARK 500 ASN C 495 40.34 -75.51 REMARK 500 ASP C 504 72.05 29.15 REMARK 500 ILE C 515 60.70 -154.47 REMARK 500 ASP C 522 -161.77 -115.19 REMARK 500 PHE C 532 -174.84 -67.04 REMARK 500 GLU C 534 -78.78 -42.00 REMARK 500 LEU C 547 -70.73 -68.90 REMARK 500 LEU C 550 -5.93 -49.13 REMARK 500 LYS C 553 -98.14 -34.77 REMARK 500 GLN C 556 -61.83 -104.54 REMARK 500 ALA C 557 -19.93 -48.07 REMARK 500 GLU C 559 -15.99 -49.95 REMARK 500 ALA C 565 -9.55 -56.59 REMARK 500 PHE C 567 39.94 73.23 REMARK 500 MET D 4 -80.55 -30.25 REMARK 500 MET D 5 -2.60 -45.56 REMARK 500 LEU D 17 -53.24 -26.85 REMARK 500 ASP D 22 2.25 81.38 REMARK 500 GLU D 32 -93.71 -97.67 REMARK 500 HIS D 35 144.92 -21.47 REMARK 500 ASP D 45 -167.89 -79.77 REMARK 500 PRO D 58 139.46 -39.90 REMARK 500 LEU D 59 137.69 -35.97 REMARK 500 LYS D 76 31.30 -84.33 REMARK 500 ASP D 90 -28.58 -21.54 REMARK 500 REMARK 500 THIS ENTRY HAS 87 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR E 92 0.08 SIDE CHAIN REMARK 500 TYR F 599 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 481 SG REMARK 620 2 THR C 483 OG1 57.9 REMARK 620 3 CYS C 486 SG 112.9 85.6 REMARK 620 4 CYS C 500 SG 112.1 169.8 100.9 REMARK 620 5 CYS C 503 SG 125.7 90.9 106.7 94.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 481 SG REMARK 620 2 CYS F 486 SG 99.5 REMARK 620 3 CYS F 500 SG 129.7 88.8 REMARK 620 4 CYS F 503 SG 91.7 107.9 132.7 REMARK 620 N 1 2 3 REMARK 650 REMARK 650 HELIX REMARK 650 AUTHOR PROVIDED SECONDARY STRUCTURE. REMARK 700 REMARK 700 SHEET REMARK 700 AUTHOR PROVIDED SHEET RECORDS. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN F 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JMC RELATED DB: PDB REMARK 900 MAJOR DNA-BINDING DOMAIN OF HUMAN RPA70 COMPLEXED WITH SSDNA REMARK 900 RELATED ID: 1FGU RELATED DB: PDB REMARK 900 MAJOR DNA-BINDING DOMAIN OF HUMAN RPA70 WITHOUT SSDNA REMARK 900 RELATED ID: 1QUQ RELATED DB: PDB REMARK 900 HUMAN RPA14/32 DIMER CORE REMARK 900 RELATED ID: 1DPU RELATED DB: PDB REMARK 900 C-TERMINAL DOMAIN OF HUMAN RPA32 IN COMPLEX WITH UNG2 DBREF 1L1O A 1 121 UNP P35244 RFA3_HUMAN 1 121 DBREF 1L1O D 1 121 UNP P35244 RFA3_HUMAN 1 121 DBREF 1L1O B 44 171 UNP P15927 RFA2_HUMAN 44 171 DBREF 1L1O E 44 171 UNP P15927 RFA2_HUMAN 44 171 DBREF 1L1O C 436 616 UNP P27694 RFA1_HUMAN 436 616 DBREF 1L1O F 436 616 UNP P27694 RFA1_HUMAN 436 616 SEQRES 1 A 121 MET VAL ASP MET MET ASP LEU PRO ARG SER ARG ILE ASN SEQRES 2 A 121 ALA GLY MET LEU ALA GLN PHE ILE ASP LYS PRO VAL CYS SEQRES 3 A 121 PHE VAL GLY ARG LEU GLU LYS ILE HIS PRO THR GLY LYS SEQRES 4 A 121 MET PHE ILE LEU SER ASP GLY GLU GLY LYS ASN GLY THR SEQRES 5 A 121 ILE GLU LEU MET GLU PRO LEU ASP GLU GLU ILE SER GLY SEQRES 6 A 121 ILE VAL GLU VAL VAL GLY ARG VAL THR ALA LYS ALA THR SEQRES 7 A 121 ILE LEU CYS THR SER TYR VAL GLN PHE LYS GLU ASP SER SEQRES 8 A 121 HIS PRO PHE ASP LEU GLY LEU TYR ASN GLU ALA VAL LYS SEQRES 9 A 121 ILE ILE HIS ASP PHE PRO GLN PHE TYR PRO LEU GLY ILE SEQRES 10 A 121 VAL GLN HIS ASP SEQRES 1 B 128 GLN HIS ILE VAL PRO CYS THR ILE SER GLN LEU LEU SER SEQRES 2 B 128 ALA THR LEU VAL ASP GLU VAL PHE ARG ILE GLY ASN VAL SEQRES 3 B 128 GLU ILE SER GLN VAL THR ILE VAL GLY ILE ILE ARG HIS SEQRES 4 B 128 ALA GLU LYS ALA PRO THR ASN ILE VAL TYR LYS ILE ASP SEQRES 5 B 128 ASP MET THR ALA ALA PRO MET ASP VAL ARG GLN TRP VAL SEQRES 6 B 128 ASP THR ASP ASP THR SER SER GLU ASN THR VAL VAL PRO SEQRES 7 B 128 PRO GLU THR TYR VAL LYS VAL ALA GLY HIS LEU ARG SER SEQRES 8 B 128 PHE GLN ASN LYS LYS SER LEU VAL ALA PHE LYS ILE MET SEQRES 9 B 128 PRO LEU GLU ASP MET ASN GLU PHE THR THR HIS ILE LEU SEQRES 10 B 128 GLU VAL ILE ASN ALA HIS MET VAL LEU SER LYS SEQRES 1 C 181 GLY GLY SER ASN THR ASN TRP LYS THR LEU TYR GLU VAL SEQRES 2 C 181 LYS SER GLU ASN LEU GLY GLN GLY ASP LYS PRO ASP TYR SEQRES 3 C 181 PHE SER SER VAL ALA THR VAL VAL TYR LEU ARG LYS GLU SEQRES 4 C 181 ASN CYS MET TYR GLN ALA CYS PRO THR GLN ASP CYS ASN SEQRES 5 C 181 LYS LYS VAL ILE ASP GLN GLN ASN GLY LEU TYR ARG CYS SEQRES 6 C 181 GLU LYS CYS ASP THR GLU PHE PRO ASN PHE LYS TYR ARG SEQRES 7 C 181 MET ILE LEU SER VAL ASN ILE ALA ASP PHE GLN GLU ASN SEQRES 8 C 181 GLN TRP VAL THR CYS PHE GLN GLU SER ALA GLU ALA ILE SEQRES 9 C 181 LEU GLY GLN ASN ALA ALA TYR LEU GLY GLU LEU LYS ASP SEQRES 10 C 181 LYS ASN GLU GLN ALA PHE GLU GLU VAL PHE GLN ASN ALA SEQRES 11 C 181 ASN PHE ARG SER PHE ILE PHE ARG VAL ARG VAL LYS VAL SEQRES 12 C 181 GLU THR TYR ASN ASP GLU SER ARG ILE LYS ALA THR VAL SEQRES 13 C 181 MET ASP VAL LYS PRO VAL ASP TYR ARG GLU TYR GLY ARG SEQRES 14 C 181 ARG LEU VAL MET SER ILE ARG ARG SER ALA LEU MET SEQRES 1 D 121 MET VAL ASP MET MET ASP LEU PRO ARG SER ARG ILE ASN SEQRES 2 D 121 ALA GLY MET LEU ALA GLN PHE ILE ASP LYS PRO VAL CYS SEQRES 3 D 121 PHE VAL GLY ARG LEU GLU LYS ILE HIS PRO THR GLY LYS SEQRES 4 D 121 MET PHE ILE LEU SER ASP GLY GLU GLY LYS ASN GLY THR SEQRES 5 D 121 ILE GLU LEU MET GLU PRO LEU ASP GLU GLU ILE SER GLY SEQRES 6 D 121 ILE VAL GLU VAL VAL GLY ARG VAL THR ALA LYS ALA THR SEQRES 7 D 121 ILE LEU CYS THR SER TYR VAL GLN PHE LYS GLU ASP SER SEQRES 8 D 121 HIS PRO PHE ASP LEU GLY LEU TYR ASN GLU ALA VAL LYS SEQRES 9 D 121 ILE ILE HIS ASP PHE PRO GLN PHE TYR PRO LEU GLY ILE SEQRES 10 D 121 VAL GLN HIS ASP SEQRES 1 E 128 GLN HIS ILE VAL PRO CYS THR ILE SER GLN LEU LEU SER SEQRES 2 E 128 ALA THR LEU VAL ASP GLU VAL PHE ARG ILE GLY ASN VAL SEQRES 3 E 128 GLU ILE SER GLN VAL THR ILE VAL GLY ILE ILE ARG HIS SEQRES 4 E 128 ALA GLU LYS ALA PRO THR ASN ILE VAL TYR LYS ILE ASP SEQRES 5 E 128 ASP MET THR ALA ALA PRO MET ASP VAL ARG GLN TRP VAL SEQRES 6 E 128 ASP THR ASP ASP THR SER SER GLU ASN THR VAL VAL PRO SEQRES 7 E 128 PRO GLU THR TYR VAL LYS VAL ALA GLY HIS LEU ARG SER SEQRES 8 E 128 PHE GLN ASN LYS LYS SER LEU VAL ALA PHE LYS ILE MET SEQRES 9 E 128 PRO LEU GLU ASP MET ASN GLU PHE THR THR HIS ILE LEU SEQRES 10 E 128 GLU VAL ILE ASN ALA HIS MET VAL LEU SER LYS SEQRES 1 F 181 GLY GLY SER ASN THR ASN TRP LYS THR LEU TYR GLU VAL SEQRES 2 F 181 LYS SER GLU ASN LEU GLY GLN GLY ASP LYS PRO ASP TYR SEQRES 3 F 181 PHE SER SER VAL ALA THR VAL VAL TYR LEU ARG LYS GLU SEQRES 4 F 181 ASN CYS MET TYR GLN ALA CYS PRO THR GLN ASP CYS ASN SEQRES 5 F 181 LYS LYS VAL ILE ASP GLN GLN ASN GLY LEU TYR ARG CYS SEQRES 6 F 181 GLU LYS CYS ASP THR GLU PHE PRO ASN PHE LYS TYR ARG SEQRES 7 F 181 MET ILE LEU SER VAL ASN ILE ALA ASP PHE GLN GLU ASN SEQRES 8 F 181 GLN TRP VAL THR CYS PHE GLN GLU SER ALA GLU ALA ILE SEQRES 9 F 181 LEU GLY GLN ASN ALA ALA TYR LEU GLY GLU LEU LYS ASP SEQRES 10 F 181 LYS ASN GLU GLN ALA PHE GLU GLU VAL PHE GLN ASN ALA SEQRES 11 F 181 ASN PHE ARG SER PHE ILE PHE ARG VAL ARG VAL LYS VAL SEQRES 12 F 181 GLU THR TYR ASN ASP GLU SER ARG ILE LYS ALA THR VAL SEQRES 13 F 181 MET ASP VAL LYS PRO VAL ASP TYR ARG GLU TYR GLY ARG SEQRES 14 F 181 ARG LEU VAL MET SER ILE ARG ARG SER ALA LEU MET HET ZN C 1 1 HET ZN F 2 1 HETNAM ZN ZINC ION FORMUL 7 ZN 2(ZN 2+) HELIX 1 1 ASN A 13 LEU A 17 5 5 HELIX 2 2 ASP A 95 PHE A 109 1 15 HELIX 3 3 PRO A 110 TYR A 113 5 4 HELIX 4 4 THR B 50 ALA B 57 1 8 HELIX 5 5 MET B 152 SER B 170 1 19 HELIX 6 6 THR C 444 ASN C 452 1 9 HELIX 7 7 GLN C 533 GLY C 541 1 9 HELIX 8 8 ASN C 543 LYS C 551 1 9 HELIX 9 9 ASN C 554 ALA C 565 1 12 HELIX 10 10 ASP C 598 MET C 616 1 19 HELIX 11 11 ASN D 13 ILE D 21 5 9 HELIX 12 12 ASP D 95 PHE D 109 1 15 HELIX 13 13 PRO D 110 TYR D 113 5 4 HELIX 14 14 THR E 50 ALA E 57 1 8 HELIX 15 15 MET E 152 SER E 170 1 19 HELIX 16 16 THR F 444 GLU F 451 1 8 HELIX 17 17 GLN F 533 GLY F 541 1 9 HELIX 18 18 ASN F 543 ASN F 554 1 12 HELIX 19 19 ASN F 554 ALA F 565 1 12 HELIX 20 20 ASP F 598 LEU F 615 1 18 SHEET 1 A 7 SER A 10 ILE A 12 0 SHEET 2 A 7 PRO A 24 ILE A 34 1 O PRO A 24 N SER A 10 SHEET 3 A 7 ILE A 66 VAL A 73 -1 N VAL A 67 O GLY A 29 SHEET 4 A 7 ILE A 79 GLN A 86 -1 N LEU A 80 O ARG A 72 SHEET 5 A 7 ASN A 50 LEU A 55 1 O THR A 52 N ILE A 79 SHEET 6 A 7 MET A 40 SER A 44 -1 O PHE A 41 N ILE A 53 SHEET 7 A 7 PRO A 24 ILE A 34 -1 O ARG A 30 N SER A 44 SHEET 1 B 7 ILE B 46 PRO B 48 0 SHEET 2 B 7 GLN B 73 GLU B 84 1 O GLN B 73 N VAL B 47 SHEET 3 B 7 TYR B 125 PHE B 135 -1 N VAL B 126 O GLY B 78 SHEET 4 B 7 LYS B 138 LYS B 145 -1 O LYS B 138 N PHE B 135 SHEET 5 B 7 MET B 102 TRP B 107 1 O ASP B 103 N LEU B 141 SHEET 6 B 7 ASN B 89 ASP B 95 -1 N ILE B 90 O GLN B 106 SHEET 7 B 7 GLN B 73 GLU B 84 -1 N ILE B 79 O ASP B 95 SHEET 1 C 2 ARG B 65 ILE B 66 0 SHEET 2 C 2 VAL B 69 GLU B 70 -1 O VAL B 69 N ILE B 66 SHEET 1 D 7 MET C 477 GLN C 479 0 SHEET 2 D 7 TYR C 512 ALA C 521 -1 N ARG C 513 O TYR C 478 SHEET 3 D 7 ASP C 460 LEU C 471 1 O THR C 467 N ALA C 521 SHEET 4 D 7 SER C 569 LYS C 577 -1 N PHE C 570 O ALA C 466 SHEET 5 D 7 LYS C 588 PRO C 596 -1 N LYS C 588 O LYS C 577 SHEET 6 D 7 ASN C 526 PHE C 532 -1 N THR C 530 O ALA C 589 SHEET 7 D 7 TYR C 512 ALA C 521 -1 O LEU C 516 N CYS C 531 SHEET 1 E 3 ILE C 491 GLN C 493 0 SHEET 2 E 3 LEU C 497 CYS C 500 -1 O LEU C 497 N GLN C 493 SHEET 3 E 3 THR C 505 PHE C 507 -1 O THR C 505 N CYS C 500 SHEET 1 F 7 SER D 10 ILE D 12 0 SHEET 2 F 7 PRO D 24 LEU D 31 1 O PRO D 24 N SER D 10 SHEET 3 F 7 ILE D 66 VAL D 73 -1 N VAL D 67 O GLY D 29 SHEET 4 F 7 ILE D 79 GLN D 86 -1 N LEU D 80 O ARG D 72 SHEET 5 F 7 ASN D 50 GLU D 54 1 O THR D 52 N ILE D 79 SHEET 6 F 7 MET D 40 SER D 44 -1 O PHE D 41 N ILE D 53 SHEET 7 F 7 PRO D 24 LEU D 31 -1 N ARG D 30 O SER D 44 SHEET 1 G 9 ILE E 46 PRO E 48 0 SHEET 2 G 9 GLN E 73 LYS E 85 1 O GLN E 73 N VAL E 47 SHEET 3 G 9 TYR E 125 ARG E 133 -1 N VAL E 126 O GLY E 78 SHEET 4 G 9 MET E 147 PRO E 148 -1 O MET E 147 N LYS E 127 SHEET 5 G 9 TYR E 125 ARG E 133 -1 N LYS E 127 O MET E 147 SHEET 6 G 9 SER E 140 VAL E 142 -1 O SER E 140 N ARG E 133 SHEET 7 G 9 MET E 102 GLN E 106 1 O ASP E 103 N LEU E 141 SHEET 8 G 9 ILE E 90 ASP E 95 -1 N ILE E 90 O GLN E 106 SHEET 9 G 9 GLN E 73 LYS E 85 -1 O ILE E 79 N ASP E 95 SHEET 1 H 2 ARG E 65 ILE E 66 0 SHEET 2 H 2 VAL E 69 GLU E 70 -1 N VAL E 69 O ILE E 66 SHEET 1 I 9 TYR F 461 ARG F 472 0 SHEET 2 I 9 SER F 569 LYS F 577 -1 N PHE F 570 O ALA F 466 SHEET 3 I 9 LYS F 588 PRO F 596 -1 N LYS F 588 O LYS F 577 SHEET 4 I 9 SER F 569 LYS F 577 -1 N ILE F 571 O LYS F 595 SHEET 5 I 9 TYR F 461 ARG F 472 -1 O PHE F 462 N VAL F 574 SHEET 6 I 9 TYR F 512 ALA F 521 -1 O SER F 517 N ARG F 472 SHEET 7 I 9 MET F 477 GLN F 479 -1 O TYR F 478 N ARG F 513 SHEET 8 I 9 TYR F 512 ALA F 521 -1 N ARG F 513 O TYR F 478 SHEET 9 I 9 ASN F 526 PHE F 532 -1 O GLN F 527 N ILE F 520 SHEET 1 J 3 ILE F 491 GLN F 493 0 SHEET 2 J 3 LEU F 497 CYS F 500 -1 O LEU F 497 N GLN F 493 SHEET 3 J 3 THR F 505 PHE F 507 -1 O THR F 505 N CYS F 500 LINK ZN ZN C 1 SG CYS C 481 1555 1555 2.06 LINK ZN ZN C 1 OG1 THR C 483 1555 1555 2.68 LINK ZN ZN C 1 SG CYS C 486 1555 1555 2.54 LINK ZN ZN C 1 SG CYS C 500 1555 1555 2.25 LINK ZN ZN C 1 SG CYS C 503 1555 1555 2.22 LINK ZN ZN F 2 SG CYS F 481 1555 1555 2.18 LINK ZN ZN F 2 SG CYS F 486 1555 1555 2.58 LINK ZN ZN F 2 SG CYS F 500 1555 1555 2.19 LINK ZN ZN F 2 SG CYS F 503 1555 1555 2.31 SITE 1 AC1 5 CYS C 481 THR C 483 CYS C 486 CYS C 500 SITE 2 AC1 5 CYS C 503 SITE 1 AC2 4 CYS F 481 CYS F 486 CYS F 500 CYS F 503 CRYST1 88.527 88.527 341.090 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011296 0.006522 0.000000 0.00000 SCALE2 0.000000 0.013043 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002932 0.00000