PDB Short entry for 1L8T HEADER TRANSFERASE 21-MAR-02 1L8T TITLE CRYSTAL STRUCTURE OF 3',5"-AMINOGLYCOSIDE PHOSPHOTRANSFERASE TYPE IIIA TITLE 2 ADP KANAMYCIN A COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOGLYCOSIDE 3'-PHOSPHOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: KANAMYCIN KINASE TYPE III, NEOMYCIN-KANAMYCIN COMPND 5 PHOSPHOTRANSFERASE TYPE III, APH(3')III; COMPND 6 EC: 2.7.1.95; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPCRG6 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.H.FONG,A.M.BERGHUIS REVDAT 3 14-FEB-24 1L8T 1 REMARK LINK REVDAT 2 24-FEB-09 1L8T 1 VERSN REVDAT 1 19-JUN-02 1L8T 0 JRNL AUTH D.H.FONG,A.M.BERGHUIS JRNL TITL SUBSTRATE PROMISCUITY OF AN AMINOGLYCOSIDE ANTIBIOTIC JRNL TITL 2 RESISTANCE ENZYME VIA TARGET MIMICRY. JRNL REF EMBO J. V. 21 2323 2002 JRNL REFN ISSN 0261-4189 JRNL PMID 12006485 JRNL DOI 10.1093/EMBOJ/21.10.2323 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 12186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1297 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 57.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE : 0.4490 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 144 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.037 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2170 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.41 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.56 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.321 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1L8T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015749. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-99; 01-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 110; 110 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; Y REMARK 200 RADIATION SOURCE : ROTATING ANODE; NSLS REMARK 200 BEAMLINE : NULL; X8C REMARK 200 X-RAY GENERATOR MODEL : RIGAKU; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418; 1.072 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12532 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 600, CHES, PH 9.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 150.64450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 225.96675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.32225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 150.64450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.32225 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 225.96675 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ALA A 2 REMARK 475 LYS A 3 REMARK 475 MET A 4 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 11 CD CE NZ REMARK 480 LYS A 12 CG CD CE NZ REMARK 480 LYS A 30 CE NZ REMARK 480 LYS A 51 CB CG CD CE NZ REMARK 480 LYS A 75 CB CG CD CE NZ REMARK 480 GLU A 103 CG CD OE1 OE2 REMARK 480 ASP A 104 CB CG OD1 OD2 REMARK 480 GLU A 105 CB CG CD OE1 OE2 REMARK 480 GLN A 106 CB CG CD OE1 NE2 REMARK 480 LYS A 110 CG CD CE NZ REMARK 480 GLU A 161 CD OE1 OE2 REMARK 480 LYS A 166 CG CD CE NZ REMARK 480 GLU A 181 CD OE1 OE2 REMARK 480 GLU A 183 CD OE1 OE2 REMARK 480 ILE A 232 CG1 CG2 CD1 REMARK 480 GLU A 235 CB CG CD OE1 OE2 REMARK 480 GLN A 236 CG CD OE1 NE2 REMARK 480 GLU A 239 CG CD OE1 OE2 REMARK 480 LYS A 255 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SG CYS A 19 SG CYS A 156 7643 1.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 4 -19.60 79.63 REMARK 500 ARG A 5 -110.51 -148.55 REMARK 500 GLU A 39 -167.43 -170.98 REMARK 500 LYS A 70 -33.37 -133.27 REMARK 500 GLU A 103 -15.44 -38.04 REMARK 500 ASP A 104 81.99 -170.61 REMARK 500 GLN A 106 52.23 -98.56 REMARK 500 ASN A 134 57.20 -106.12 REMARK 500 CYS A 156 50.57 -110.89 REMARK 500 PRO A 164 -70.39 -56.74 REMARK 500 PHE A 165 140.37 -19.86 REMARK 500 LYS A 179 124.00 -35.12 REMARK 500 ASP A 190 65.19 -150.56 REMARK 500 ASP A 193 2.25 -65.97 REMARK 500 ASP A 208 77.92 59.56 REMARK 500 ILE A 232 56.57 -152.90 REMARK 500 GLU A 234 91.41 169.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 195 OD1 REMARK 620 2 ASP A 208 OD2 90.5 REMARK 620 3 ADP A 300 O2A 99.9 91.4 REMARK 620 4 ADP A 300 O3B 170.6 80.1 80.8 REMARK 620 5 HOH A 526 O 100.1 166.0 95.7 89.2 REMARK 620 6 HOH A 528 O 102.7 83.3 156.8 76.0 85.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 208 OD2 REMARK 620 2 ASP A 208 OD1 54.1 REMARK 620 3 ADP A 300 O1B 75.1 82.2 REMARK 620 4 HOH A 527 O 89.3 143.3 85.6 REMARK 620 5 HOH A 539 O 79.8 87.8 154.2 88.5 REMARK 620 6 HOH A 562 O 161.0 111.4 117.8 104.9 88.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KAN A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J7I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3',5"-AMINOGLYCOSIDE PHOSPHOTRANSFERASE TYPE REMARK 900 IIIA APOENZYME REMARK 900 RELATED ID: 1J7L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3',5"-AMINOGLYCOSIDE PHOSPHOTRANSFERASE TYPE REMARK 900 IIIA ADP COMPLEX REMARK 900 RELATED ID: 1J7U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3',5"-AMINOGLYCOSIDE PHOSPHOTRANSFERASE TYPE REMARK 900 IIIA AMPPNP COMPLEX DBREF 1L8T A 2 264 UNP P0A3Y5 KKA3_ENTFA 2 264 SEQRES 1 A 263 ALA LYS MET ARG ILE SER PRO GLU LEU LYS LYS LEU ILE SEQRES 2 A 263 GLU LYS TYR ARG CYS VAL LYS ASP THR GLU GLY MET SER SEQRES 3 A 263 PRO ALA LYS VAL TYR LYS LEU VAL GLY GLU ASN GLU ASN SEQRES 4 A 263 LEU TYR LEU LYS MET THR ASP SER ARG TYR LYS GLY THR SEQRES 5 A 263 THR TYR ASP VAL GLU ARG GLU LYS ASP MET MET LEU TRP SEQRES 6 A 263 LEU GLU GLY LYS LEU PRO VAL PRO LYS VAL LEU HIS PHE SEQRES 7 A 263 GLU ARG HIS ASP GLY TRP SER ASN LEU LEU MET SER GLU SEQRES 8 A 263 ALA ASP GLY VAL LEU CYS SER GLU GLU TYR GLU ASP GLU SEQRES 9 A 263 GLN SER PRO GLU LYS ILE ILE GLU LEU TYR ALA GLU CYS SEQRES 10 A 263 ILE ARG LEU PHE HIS SER ILE ASP ILE SER ASP CYS PRO SEQRES 11 A 263 TYR THR ASN SER LEU ASP SER ARG LEU ALA GLU LEU ASP SEQRES 12 A 263 TYR LEU LEU ASN ASN ASP LEU ALA ASP VAL ASP CYS GLU SEQRES 13 A 263 ASN TRP GLU GLU ASP THR PRO PHE LYS ASP PRO ARG GLU SEQRES 14 A 263 LEU TYR ASP PHE LEU LYS THR GLU LYS PRO GLU GLU GLU SEQRES 15 A 263 LEU VAL PHE SER HIS GLY ASP LEU GLY ASP SER ASN ILE SEQRES 16 A 263 PHE VAL LYS ASP GLY LYS VAL SER GLY PHE ILE ASP LEU SEQRES 17 A 263 GLY ARG SER GLY ARG ALA ASP LYS TRP TYR ASP ILE ALA SEQRES 18 A 263 PHE CYS VAL ARG SER ILE ARG GLU ASP ILE GLY GLU GLU SEQRES 19 A 263 GLN TYR VAL GLU LEU PHE PHE ASP LEU LEU GLY ILE LYS SEQRES 20 A 263 PRO ASP TRP GLU LYS ILE LYS TYR TYR ILE LEU LEU ASP SEQRES 21 A 263 GLU LEU PHE HET MG A 301 1 HET MG A 302 1 HET ADP A 300 27 HET KAN A 1 33 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM KAN KANAMYCIN A FORMUL 2 MG 2(MG 2+) FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 KAN C18 H36 N4 O11 FORMUL 6 HOH *65(H2 O) HELIX 1 1 SER A 7 LYS A 16 1 10 HELIX 2 2 ASP A 47 LYS A 51 5 5 HELIX 3 3 ASP A 56 LEU A 67 1 12 HELIX 4 4 CYS A 98 GLU A 103 1 6 HELIX 5 5 SER A 107 SER A 124 1 18 HELIX 6 6 SER A 135 ASN A 149 1 15 HELIX 7 7 ASP A 167 GLU A 178 1 12 HELIX 8 8 LYS A 217 ILE A 232 1 16 HELIX 9 9 GLU A 234 GLY A 246 1 13 HELIX 10 10 ASP A 250 GLU A 262 1 13 SHEET 1 A 5 ARG A 18 LYS A 21 0 SHEET 2 A 5 LYS A 30 VAL A 35 -1 O LYS A 33 N VAL A 20 SHEET 3 A 5 ASN A 40 THR A 46 -1 O LEU A 41 N LEU A 34 SHEET 4 A 5 TRP A 85 SER A 91 -1 O LEU A 88 N LYS A 44 SHEET 5 A 5 VAL A 76 HIS A 82 -1 N HIS A 78 O LEU A 89 SHEET 1 B 3 VAL A 96 LEU A 97 0 SHEET 2 B 3 ILE A 196 VAL A 198 -1 O VAL A 198 N VAL A 96 SHEET 3 B 3 VAL A 203 PHE A 206 -1 O SER A 204 N PHE A 197 SHEET 1 C 2 LEU A 184 SER A 187 0 SHEET 2 C 2 GLY A 213 ASP A 216 -1 O GLY A 213 N SER A 187 LINK OD1 ASN A 195 MG MG A 301 1555 1555 1.86 LINK OD2 ASP A 208 MG MG A 301 1555 1555 1.98 LINK OD2 ASP A 208 MG MG A 302 1555 1555 2.58 LINK OD1 ASP A 208 MG MG A 302 1555 1555 2.16 LINK O2A ADP A 300 MG MG A 301 1555 1555 1.82 LINK O3B ADP A 300 MG MG A 301 1555 1555 2.09 LINK O1B ADP A 300 MG MG A 302 1555 1555 1.96 LINK MG MG A 301 O HOH A 526 1555 1555 1.83 LINK MG MG A 301 O HOH A 528 1555 1555 2.03 LINK MG MG A 302 O HOH A 527 1555 1555 1.97 LINK MG MG A 302 O HOH A 539 1555 1555 1.84 LINK MG MG A 302 O HOH A 562 1555 1555 1.99 SITE 1 AC1 5 ASN A 195 ASP A 208 ADP A 300 HOH A 526 SITE 2 AC1 5 HOH A 528 SITE 1 AC2 5 ASP A 208 ADP A 300 HOH A 527 HOH A 539 SITE 2 AC2 5 HOH A 562 SITE 1 AC3 26 ASP A 22 GLU A 24 GLY A 25 MET A 26 SITE 2 AC3 26 SER A 27 TYR A 42 LYS A 44 MET A 90 SITE 3 AC3 26 SER A 91 GLU A 92 ALA A 93 LEU A 97 SITE 4 AC3 26 SER A 194 ASN A 195 PHE A 197 ILE A 207 SITE 5 AC3 26 ASP A 208 MG A 301 MG A 302 HOH A 521 SITE 6 AC3 26 HOH A 526 HOH A 527 HOH A 528 HOH A 535 SITE 7 AC3 26 HOH A 536 HOH A 564 SITE 1 AC4 18 MET A 26 GLU A 157 ASN A 158 GLU A 160 SITE 2 AC4 18 ASP A 190 ARG A 226 SER A 227 GLU A 230 SITE 3 AC4 18 ASP A 261 GLU A 262 PHE A 264 HOH A 517 SITE 4 AC4 18 HOH A 527 HOH A 528 HOH A 530 HOH A 538 SITE 5 AC4 18 HOH A 563 HOH A 564 CRYST1 46.629 46.629 301.289 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021446 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003319 0.00000