PDB Short entry for 1LGT HEADER OXIDOREDUCTASE 16-APR-02 1LGT TITLE CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE (DHBD) TITLE 2 COMPLEXED WITH 2'-CL DIHYDROXYBIPHENYL (DHB) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIPHENYL-2,3-DIOL 1,2-DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 23OHBP OXYGENASE, 2,3-DIHYDROXYBIPHENYL DIOXYGENASE, DHBD; COMPND 5 EC: 1.13.11.39; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA XENOVORANS; SOURCE 3 ORGANISM_TAXID: 266265; SOURCE 4 STRAIN: LB400; SOURCE 5 EXPRESSION_SYSTEM: PSEUDOMONAS PUTIDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 303; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: KT2442; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLEBD4; SOURCE 10 OTHER_DETAILS: BURKHOLDERIA SP. STRAIN LB400 HAS BEEN RECLASSIFED. SOURCE 11 PRIOR PUBLICATIONS MAY REFER TO THIS ORGANISM AS PSEUDOMONAS SP. SOURCE 12 STRAIN LB400 OR BURKHOLDERIA CEPACIA STRAIN LB400. SEE M.G.FAIN, SOURCE 13 J.D.HADDOCK, CURRENT MICROBIOL. (2001) 42:269-73 KEYWDS EXTRADIOL DIOXYGENASE, 2, 3-DIHYDROXYBIPHENYL, NON-HEME IRON, KEYWDS 2 ANAEROBIC, PCB BIODEGRADATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.DAI,J.T.BOLIN REVDAT 4 14-FEB-24 1LGT 1 REMARK LINK REVDAT 3 13-JUL-11 1LGT 1 VERSN REVDAT 2 24-FEB-09 1LGT 1 VERSN REVDAT 1 27-NOV-02 1LGT 0 JRNL AUTH S.DAI,F.H.VAILLANCOURT,H.MAAROUFI,N.M.DROUIN,D.B.NEAU, JRNL AUTH 2 V.SNIECKUS,J.T.BOLIN,L.D.ELTIS JRNL TITL IDENTIFICATION AND ANALYSIS OF A BOTTLENECK IN PCB JRNL TITL 2 BIODEGRADATION JRNL REF NAT.STRUCT.BIOL. V. 12 934 2002 JRNL REFN ISSN 1072-8368 JRNL PMID 12415290 JRNL DOI 10.1038/NSB866 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2522232.850 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 43300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2170 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6844 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 406 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2205 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 324 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.48000 REMARK 3 B22 (A**2) : -1.48000 REMARK 3 B33 (A**2) : 2.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.158 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.856 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.798 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.700 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 74.25 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PARAMETER_INFILE_2 REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : BP3.PAR REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPOLOGY_INFILE_1 REMARK 3 TOPOLOGY FILE 2 : TOPOLOGY_INFILE_2 REMARK 3 TOPOLOGY FILE 3 : TOPOLOGY_INFILE_3 REMARK 3 TOPOLOGY FILE 4 : TOPOLOGY_INFILE_4 REMARK 3 TOPOLOGY FILE 5 : TOPOLOGY_INFILE_5 REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 SOLVENTS 8036, 9204 AND 9206 MARK DENSITY FEATURES THAT MAY BE REMARK 3 ASSOCIATED WITH A REMARK 3 PARTIALLY OCCUPIED PEG MOLECULE FROM THE CRYSTALLIZATION. REMARK 4 REMARK 4 1LGT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-02. REMARK 100 THE DEPOSITION ID IS D_1000015937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97833 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84926 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, T-BUTANOL, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 61.16850 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 61.16850 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 53.47350 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 61.16850 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 61.16850 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 53.47350 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 61.16850 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 61.16850 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 53.47350 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 61.16850 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 61.16850 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 53.47350 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 61.16850 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.16850 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 53.47350 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 61.16850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 61.16850 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 53.47350 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 61.16850 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 61.16850 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 53.47350 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 61.16850 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 61.16850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 53.47350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 26340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 78480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -450.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 289 REMARK 465 ASP A 290 REMARK 465 LYS A 291 REMARK 465 ALA A 292 REMARK 465 ALA A 293 REMARK 465 ALA A 294 REMARK 465 ARG A 295 REMARK 465 ASN A 296 REMARK 465 LYS A 297 REMARK 465 ALA A 298 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 44 -151.82 -156.25 REMARK 500 ALA A 133 92.91 -68.50 REMARK 500 THR A 139 -101.39 -132.00 REMARK 500 ASN A 191 -161.28 -161.06 REMARK 500 PRO A 205 33.27 -85.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 146 NE2 REMARK 620 2 HIS A 210 NE2 100.4 REMARK 620 3 GLU A 260 OE1 98.8 90.1 REMARK 620 4 BP3 A 300 OA2 152.0 86.5 108.3 REMARK 620 5 BP3 A 300 OA3 92.7 163.5 97.9 77.3 REMARK 620 6 HOH A9111 O 74.3 91.9 173.1 78.4 82.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 189 NE2 REMARK 620 2 HOH A9196 O 100.3 REMARK 620 3 HOH A9197 O 89.3 94.9 REMARK 620 4 HOH A9198 O 92.3 82.3 177.0 REMARK 620 5 HOH A9199 O 91.3 167.5 90.1 92.5 REMARK 620 6 HOH A9200 O 173.9 83.0 85.2 93.4 86.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BP3 A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BP3 A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HAN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BIPHENYL-CLEAVING EXTRADIOL DIOXYGENASE REMARK 900 FROM A PCB-DEGRADING PSEUDOMONAD REMARK 900 RELATED ID: 1LKD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE (DHBD) REMARK 900 COMPLEXED WITH 2', 6'- DICL DIHYDROXYBIPHENYL (DHB) REMARK 900 RELATED ID: 1KMY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE REMARK 900 COMPLEXED WITH 2,3-DIHYDROXYBIPHENYL UNDER ANAEROBIC CONDITION REMARK 900 RELATED ID: 1KND RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE REMARK 900 COMPLEXED WITH CATECHOL UNDER ANAEROBIC CONDITION REMARK 900 RELATED ID: 1KNF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE REMARK 900 COMPLEXED WITH 3-METHYL CATECHOL UNDER ANAEROBIC CONDITION DBREF 1LGT A 2 298 UNP P47228 BPHC_BURCE 1 297 SEQRES 1 A 297 SER ILE ARG SER LEU GLY TYR MET GLY PHE ALA VAL SER SEQRES 2 A 297 ASP VAL ALA ALA TRP ARG SER PHE LEU THR GLN LYS LEU SEQRES 3 A 297 GLY LEU MET GLU ALA GLY THR THR ASP ASN GLY ASP LEU SEQRES 4 A 297 PHE ARG ILE ASP SER ARG ALA TRP ARG ILE ALA VAL GLN SEQRES 5 A 297 GLN GLY GLU VAL ASP ASP LEU ALA PHE ALA GLY TYR GLU SEQRES 6 A 297 VAL ALA ASP ALA ALA GLY LEU ALA GLN MET ALA ASP LYS SEQRES 7 A 297 LEU LYS GLN ALA GLY ILE ALA VAL THR THR GLY ASP ALA SEQRES 8 A 297 SER LEU ALA ARG ARG ARG GLY VAL THR GLY LEU ILE THR SEQRES 9 A 297 PHE ALA ASP PRO PHE GLY LEU PRO LEU GLU ILE TYR TYR SEQRES 10 A 297 GLY ALA SER GLU VAL PHE GLU LYS PRO PHE LEU PRO GLY SEQRES 11 A 297 ALA ALA VAL SER GLY PHE LEU THR GLY GLU GLN GLY LEU SEQRES 12 A 297 GLY HIS PHE VAL ARG CYS VAL PRO ASP SER ASP LYS ALA SEQRES 13 A 297 LEU ALA PHE TYR THR ASP VAL LEU GLY PHE GLN LEU SER SEQRES 14 A 297 ASP VAL ILE ASP MET LYS MET GLY PRO ASP VAL THR VAL SEQRES 15 A 297 PRO ALA TYR PHE LEU HIS CYS ASN GLU ARG HIS HIS THR SEQRES 16 A 297 LEU ALA ILE ALA ALA PHE PRO LEU PRO LYS ARG ILE HIS SEQRES 17 A 297 HIS PHE MET LEU GLU VAL ALA SER LEU ASP ASP VAL GLY SEQRES 18 A 297 PHE ALA PHE ASP ARG VAL ASP ALA ASP GLY LEU ILE THR SEQRES 19 A 297 SER THR LEU GLY ARG HIS THR ASN ASP HIS MET VAL SER SEQRES 20 A 297 PHE TYR ALA SER THR PRO SER GLY VAL GLU VAL GLU TYR SEQRES 21 A 297 GLY TRP SER ALA ARG THR VAL ASP ARG SER TRP VAL VAL SEQRES 22 A 297 VAL ARG HIS ASP SER PRO SER MET TRP GLY HIS LYS SER SEQRES 23 A 297 VAL ARG ASP LYS ALA ALA ALA ARG ASN LYS ALA HET FE2 A 500 1 HET FE2 A 501 1 HET BP3 A 300 15 HET BP3 A 301 15 HETNAM FE2 FE (II) ION HETNAM BP3 2'-CHLORO-BIPHENYL-2,3-DIOL FORMUL 2 FE2 2(FE 2+) FORMUL 4 BP3 2(C12 H9 CL O2) FORMUL 6 HOH *324(H2 O) HELIX 1 1 ASP A 15 LYS A 26 1 12 HELIX 2 2 ASP A 69 ALA A 83 1 15 HELIX 3 3 ASP A 91 GLY A 99 1 9 HELIX 4 4 THR A 139 GLY A 143 5 5 HELIX 5 5 ASP A 153 VAL A 164 1 12 HELIX 6 6 SER A 217 ALA A 230 1 14 SHEET 1 A 8 MET A 30 THR A 35 0 SHEET 2 A 8 GLY A 38 ARG A 42 -1 O ARG A 42 N MET A 30 SHEET 3 A 8 ILE A 50 GLN A 54 -1 O VAL A 52 N ASP A 39 SHEET 4 A 8 ILE A 3 VAL A 13 1 N PHE A 11 O GLN A 53 SHEET 5 A 8 ASP A 59 VAL A 67 -1 O ALA A 61 N GLY A 10 SHEET 6 A 8 PRO A 113 TYR A 118 1 O GLU A 115 N TYR A 65 SHEET 7 A 8 GLY A 102 ALA A 107 -1 N PHE A 106 O LEU A 114 SHEET 8 A 8 THR A 88 THR A 89 -1 N THR A 88 O THR A 105 SHEET 1 B10 VAL A 275 HIS A 277 0 SHEET 2 B10 GLN A 168 GLY A 178 1 N VAL A 172 O HIS A 277 SHEET 3 B10 VAL A 181 HIS A 189 -1 O HIS A 189 N GLN A 168 SHEET 4 B10 LEU A 197 ALA A 200 -1 O LEU A 197 N LEU A 188 SHEET 5 B10 HIS A 146 CYS A 150 1 N ARG A 149 O ALA A 198 SHEET 6 B10 ILE A 208 GLU A 214 -1 O MET A 212 N HIS A 146 SHEET 7 B10 GLU A 258 TRP A 263 1 O GLU A 260 N PHE A 211 SHEET 8 B10 VAL A 247 SER A 252 -1 N VAL A 247 O TRP A 263 SHEET 9 B10 ILE A 234 HIS A 241 -1 N GLY A 239 O SER A 248 SHEET 10 B10 SER A 281 GLY A 284 -1 O MET A 282 N ARG A 240 LINK NE2 HIS A 146 FE FE2 A 500 1555 1555 2.30 LINK NE2 HIS A 189 FE FE2 A 501 1555 1555 2.38 LINK NE2 HIS A 210 FE FE2 A 500 1555 1555 2.27 LINK OE1 GLU A 260 FE FE2 A 500 1555 1555 2.05 LINK OA2 BP3 A 300 FE FE2 A 500 1555 1555 2.08 LINK OA3 BP3 A 300 FE FE2 A 500 1555 1555 2.27 LINK FE FE2 A 500 O HOH A9111 1555 1555 2.45 LINK FE FE2 A 501 O HOH A9196 1555 1555 2.25 LINK FE FE2 A 501 O HOH A9197 1555 1555 2.23 LINK FE FE2 A 501 O HOH A9198 1555 1555 2.25 LINK FE FE2 A 501 O HOH A9199 1555 1555 2.28 LINK FE FE2 A 501 O HOH A9200 1555 1555 2.31 SITE 1 AC1 5 HIS A 146 HIS A 210 GLU A 260 BP3 A 300 SITE 2 AC1 5 HOH A9111 SITE 1 AC2 6 HIS A 189 HOH A9196 HOH A9197 HOH A9198 SITE 2 AC2 6 HOH A9199 HOH A9200 SITE 1 AC3 13 HIS A 146 VAL A 148 MET A 175 PHE A 187 SITE 2 AC3 13 HIS A 195 HIS A 210 HIS A 241 ASN A 243 SITE 3 AC3 13 TYR A 250 GLU A 260 FE2 A 500 HOH A9111 SITE 4 AC3 13 HOH A9112 SITE 1 AC4 7 PHE A 110 PRO A 152 PRO A 205 LYS A 206 SITE 2 AC4 7 HIS A 209 GLY A 256 GLU A 258 CRYST1 122.337 122.337 106.947 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008174 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008174 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009350 0.00000