PDB Short entry for 1LHO HEADER TRANSPORT PROTEIN 17-APR-02 1LHO TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL LG-DOMAIN OF SHBG IN COMPLEX WITH TITLE 2 5ALPHA-ANDROSTANE-3BETA,17BETA-DIOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEX HORMONE-BINDING GLOBULIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LG-LIKE 1 DOMAIN, RESIDUES 30-218; COMPND 5 SYNONYM: SHBG, SEX STEROID-BINDING PROTEIN, SBP, TESTIS-SPECIFIC COMPND 6 ANDROGEN-BINDING PROTEIN, ABP; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS SHBG, 17B-DHA, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.GRISHKOVSKAYA,G.V.AVVAKUMOV,G.L.HAMMOND,M.G.CATALANO,Y.A.MULLER REVDAT 4 16-AUG-23 1LHO 1 REMARK LINK REVDAT 3 11-OCT-17 1LHO 1 REMARK REVDAT 2 24-FEB-09 1LHO 1 VERSN REVDAT 1 23-OCT-02 1LHO 0 JRNL AUTH I.GRISHKOVSKAYA,G.V.AVVAKUMOV,G.L.HAMMOND,M.G.CATALANO, JRNL AUTH 2 Y.A.MULLER JRNL TITL STEROID LIGANDS BIND HUMAN SEX HORMONE-BINDING GLOBULIN IN JRNL TITL 2 SPECIFIC ORIENTATIONS AND PRODUCE DISTINCT CHANGES IN JRNL TITL 3 PROTEIN CONFORMATION JRNL REF J.BIOL.CHEM. V. 277 32086 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12065592 JRNL DOI 10.1074/JBC.M203999200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 10350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1114 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1373 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 93 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 1.550 REMARK 3 BOND ANGLES (DEGREES) : 0.010 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000015948. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11464 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1D2S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, CALCIUM CHLORIDE, 17B-DHA, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 51.94600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.99104 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 28.19300 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 51.94600 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.99104 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 28.19300 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 51.94600 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.99104 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 28.19300 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 51.94600 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.99104 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 28.19300 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 51.94600 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.99104 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 28.19300 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 51.94600 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.99104 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.19300 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.98207 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 56.38600 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 59.98207 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 56.38600 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 59.98207 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 56.38600 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 59.98207 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 56.38600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 59.98207 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 56.38600 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 59.98207 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 56.38600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 84.57900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 480 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 1 REMARK 465 ARG A 2 REMARK 465 PRO A 3 REMARK 465 VAL A 4 REMARK 465 LEU A 5 REMARK 465 PRO A 6 REMARK 465 THR A 7 REMARK 465 GLN A 8 REMARK 465 SER A 9 REMARK 465 ALA A 10 REMARK 465 HIS A 11 REMARK 465 ASP A 12 REMARK 465 ASP A 189 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 478 O HOH A 478 4556 1.37 REMARK 500 O HOH A 481 O HOH A 481 5556 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 61 114.55 -162.76 REMARK 500 ASP A 65 74.49 -150.99 REMARK 500 ASP A 96 46.34 -91.23 REMARK 500 ARG A 135 -82.82 -48.24 REMARK 500 LEU A 171 -127.47 50.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 50 OD2 REMARK 620 2 ASP A 50 OD1 55.6 REMARK 620 3 GLU A 52 O 97.3 78.8 REMARK 620 4 ALA A 160 O 87.6 135.3 82.4 REMARK 620 5 HOH A 417 O 165.6 138.8 86.5 79.1 REMARK 620 6 HOH A 434 O 116.4 68.5 99.4 155.3 76.4 REMARK 620 7 HOH A 454 O 85.6 107.6 173.5 91.9 89.3 84.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AOM A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1D2S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL LAMININ G-LIKE DOMAINOF SHBG IN REMARK 900 COMPLEX WITH DIHYDROTESTOSTERONE REMARK 900 RELATED ID: 1F5F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL G-DOMAIN OF SHBG IN COMPLEX REMARK 900 WITH ZINC REMARK 900 RELATED ID: 1KDK RELATED DB: PDB REMARK 900 THE STRUCTURE OF THE N-TERMINAL LG DOMAIN OF SHBG IN CRYSTALS REMARK 900 SOAKED WITH EDTA REMARK 900 RELATED ID: 1KDM RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF THE HUMAN SEX HORMONE-BINDING GLOBULIN REMARK 900 (TETRAGONAL CRYSTAL FORM) REMARK 900 RELATED ID: 1LHN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL LG-DOMAIN OF SHBG IN COMPLEX REMARK 900 WITH 5ALPHA-ANDROSTANE-3BETA,17ALPHA-DIOL REMARK 900 RELATED ID: 1LHU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL LG-DOMAIN OF SHBG IN COMPLEX REMARK 900 WITH ESTRADIOL REMARK 900 RELATED ID: 1LHV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL LG-DOMAIN OF SHBG IN COMPLEX REMARK 900 WITH NORGESTREL REMARK 900 RELATED ID: 1LHW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL LG-DOMAIN OF SHBG IN COMPLEX REMARK 900 WITH 2-METHOXYESTRADIOL DBREF 1LHO A 1 189 UNP P04278 SHBG_HUMAN 30 218 SEQRES 1 A 189 LEU ARG PRO VAL LEU PRO THR GLN SER ALA HIS ASP PRO SEQRES 2 A 189 PRO ALA VAL HIS LEU SER ASN GLY PRO GLY GLN GLU PRO SEQRES 3 A 189 ILE ALA VAL MET THR PHE ASP LEU THR LYS ILE THR LYS SEQRES 4 A 189 THR SER SER SER PHE GLU VAL ARG THR TRP ASP PRO GLU SEQRES 5 A 189 GLY VAL ILE PHE TYR GLY ASP THR ASN PRO LYS ASP ASP SEQRES 6 A 189 TRP PHE MET LEU GLY LEU ARG ASP GLY ARG PRO GLU ILE SEQRES 7 A 189 GLN LEU HIS ASN HIS TRP ALA GLN LEU THR VAL GLY ALA SEQRES 8 A 189 GLY PRO ARG LEU ASP ASP GLY ARG TRP HIS GLN VAL GLU SEQRES 9 A 189 VAL LYS MET GLU GLY ASP SER VAL LEU LEU GLU VAL ASP SEQRES 10 A 189 GLY GLU GLU VAL LEU ARG LEU ARG GLN VAL SER GLY PRO SEQRES 11 A 189 LEU THR SER LYS ARG HIS PRO ILE MET ARG ILE ALA LEU SEQRES 12 A 189 GLY GLY LEU LEU PHE PRO ALA SER ASN LEU ARG LEU PRO SEQRES 13 A 189 LEU VAL PRO ALA LEU ASP GLY CYS LEU ARG ARG ASP SER SEQRES 14 A 189 TRP LEU ASP LYS GLN ALA GLU ILE SER ALA SER ALA PRO SEQRES 15 A 189 THR SER LEU ARG SER CYS ASP HET CA A 401 1 HET AOM A 301 21 HETNAM CA CALCIUM ION HETNAM AOM 5-ALPHA-ANDROSTANE-3-BETA,17BETA-DIOL FORMUL 2 CA CA 2+ FORMUL 3 AOM C19 H32 O2 FORMUL 4 HOH *93(H2 O) HELIX 1 1 THR A 35 ILE A 37 5 3 HELIX 2 2 PRO A 149 LEU A 153 5 5 HELIX 3 3 ASP A 172 GLN A 174 5 3 SHEET 1 A 6 ALA A 15 HIS A 17 0 SHEET 2 A 6 GLY A 163 SER A 169 -1 O LEU A 165 N VAL A 16 SHEET 3 A 6 SER A 42 THR A 48 -1 N ARG A 47 O CYS A 164 SHEET 4 A 6 HIS A 101 GLU A 108 -1 O VAL A 103 N PHE A 44 SHEET 5 A 6 SER A 111 VAL A 116 -1 O LEU A 113 N LYS A 106 SHEET 6 A 6 GLU A 119 LEU A 124 -1 O LEU A 122 N LEU A 114 SHEET 1 B 7 GLN A 86 GLY A 90 0 SHEET 2 B 7 ARG A 75 HIS A 81 -1 N ILE A 78 O VAL A 89 SHEET 3 B 7 ASP A 65 ARG A 72 -1 N GLY A 70 O GLU A 77 SHEET 4 B 7 GLY A 53 ASN A 61 -1 N PHE A 56 O LEU A 69 SHEET 5 B 7 ILE A 138 LEU A 143 -1 O ALA A 142 N TYR A 57 SHEET 6 B 7 ALA A 28 ASP A 33 -1 N MET A 30 O ILE A 141 SHEET 7 B 7 GLU A 176 SER A 180 -1 O ILE A 177 N THR A 31 SSBOND 1 CYS A 164 CYS A 188 1555 1555 2.03 LINK OD2 ASP A 50 CA CA A 401 1555 1555 2.27 LINK OD1 ASP A 50 CA CA A 401 1555 1555 2.44 LINK O GLU A 52 CA CA A 401 1555 1555 2.40 LINK O ALA A 160 CA CA A 401 1555 1555 2.39 LINK CA CA A 401 O HOH A 417 1555 1555 2.22 LINK CA CA A 401 O HOH A 434 1555 1555 2.46 LINK CA CA A 401 O HOH A 454 1555 1555 2.48 SITE 1 AC1 6 ASP A 50 GLU A 52 ALA A 160 HOH A 417 SITE 2 AC1 6 HOH A 434 HOH A 454 SITE 1 AC2 11 THR A 40 SER A 41 SER A 42 GLY A 58 SITE 2 AC2 11 ASP A 65 TRP A 66 PHE A 67 ASN A 82 SITE 3 AC2 11 VAL A 105 MET A 107 HOH A 431 CRYST1 103.892 103.892 84.579 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009625 0.005557 0.000000 0.00000 SCALE2 0.000000 0.011114 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011823 0.00000