PDB Short entry for 1LIO HEADER TRANSFERASE 17-APR-02 1LIO TITLE STRUCTURE OF APO T. GONDII ADENOSINE KINASE CAVEAT 1LIO CHIRALITY ERRORS AT SOME CA CENTERS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AK, ADENOSINE 5'-PHOSPHOTRANSFERASE; COMPND 5 EC: 2.7.1.20; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PBACE KEYWDS ALPHA-BETA STRUCTURE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER,D.M.SCOTT,I.I.MATHEWS,S.E.EALICK,R.G.BRENNAN REVDAT 4 11-OCT-17 1LIO 1 REMARK REVDAT 3 17-NOV-09 1LIO 1 AUTHOR REVDAT 2 24-FEB-09 1LIO 1 VERSN REVDAT 1 12-JUN-02 1LIO 0 SPRSDE 12-JUN-02 1LIO 1DH2 JRNL AUTH M.A.SCHUMACHER,D.M.SCOTT,I.I.MATHEWS,S.E.EALICK,D.S.ROOS, JRNL AUTH 2 B.ULLMAN,R.G.BRENNAN JRNL TITL CRYSTAL STRUCTURES OF TOXOPLASMA GONDII ADENOSINE KINASE JRNL TITL 2 REVEAL A NOVEL CATALYTIC MECHANISM AND PRODRUG BINDING. JRNL REF J.MOL.BIOL. V. 298 875 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10801355 JRNL DOI 10.1006/JMBI.2000.3753 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 12000 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1000 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 12312 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2420 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 25.000 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.011 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 1.903 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000015971. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-98 REMARK 200 TEMPERATURE (KELVIN) : 298.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BIOTEX REMARK 200 DATA SCALING SOFTWARE : BIOTEX REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28789 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MERLOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 ASP A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 ASN A 7 REMARK 465 SER A 8 REMARK 465 ALA A 9 REMARK 465 THR A 10 REMARK 465 GLY A 11 REMARK 465 ALA A 239 REMARK 465 VAL A 255 REMARK 465 CYS A 256 REMARK 465 THR A 257 REMARK 465 GLY A 258 REMARK 465 ALA A 259 REMARK 465 LEU A 260 REMARK 465 ARG A 261 REMARK 465 LEU A 262 REMARK 465 LEU A 263 REMARK 465 THR A 264 REMARK 465 ALA A 265 REMARK 465 GLY A 266 REMARK 465 GLN A 267 REMARK 465 ASN A 268 REMARK 465 THR A 269 REMARK 465 SER A 357 REMARK 465 PHE A 358 REMARK 465 THR A 359 REMARK 465 SER A 360 REMARK 465 LEU A 361 REMARK 465 PRO A 362 REMARK 465 CYS A 363 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 240 CG OD1 OD2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 THR A 242 OG1 CG2 REMARK 470 LEU A 244 CG CD1 CD2 REMARK 470 SER A 245 OG REMARK 470 THR A 246 OG1 CG2 REMARK 470 ASN A 248 CG OD1 ND2 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 HIS A 251 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 253 CG1 CG2 REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 522 O HOH A 536 0.55 REMARK 500 CB LEU A 197 O HOH A 541 1.56 REMARK 500 OG1 THR A 290 O THR A 294 1.60 REMARK 500 CB VAL A 284 O HOH A 517 1.61 REMARK 500 O ASP A 240 O HOH A 514 1.75 REMARK 500 NZ LYS A 232 O HOH A 529 1.78 REMARK 500 CD2 LEU A 171 O HOH A 521 1.78 REMARK 500 O HOH A 377 O HOH A 441 1.84 REMARK 500 O LEU A 197 O HOH A 541 1.91 REMARK 500 C LEU A 197 O HOH A 541 1.94 REMARK 500 CG2 THR A 155 CE1 TYR A 184 1.97 REMARK 500 CA LEU A 197 O HOH A 541 1.99 REMARK 500 NH1 ARG A 279 O PRO A 283 2.01 REMARK 500 O ILE A 22 O GLY A 68 2.04 REMARK 500 CB LEU A 244 O HOH A 514 2.09 REMARK 500 N VAL A 284 O HOH A 517 2.12 REMARK 500 CG2 VAL A 284 O HOH A 517 2.15 REMARK 500 N ALA A 286 O HIS A 298 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 152 O HOH A 534 1655 0.85 REMARK 500 CD GLU A 152 O HOH A 534 1655 1.06 REMARK 500 CG GLU A 152 O HOH A 534 1655 1.93 REMARK 500 OE2 GLU A 152 O HOH A 534 1655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 61 CB PHE A 61 CG -0.110 REMARK 500 SER A 87 CA SER A 87 CB 0.094 REMARK 500 GLU A 105 CG GLU A 105 CD 0.126 REMARK 500 TYR A 184 CB TYR A 184 CG 0.114 REMARK 500 GLU A 224 CG GLU A 224 CD 0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 38 N - CA - CB ANGL. DEV. = 13.2 DEGREES REMARK 500 LYS A 40 CA - C - N ANGL. DEV. = -13.3 DEGREES REMARK 500 LYS A 40 O - C - N ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 53 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 PHE A 61 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 THR A 64 N - CA - CB ANGL. DEV. = 13.4 DEGREES REMARK 500 LEU A 72 CA - CB - CG ANGL. DEV. = -17.9 DEGREES REMARK 500 ARG A 83 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 LYS A 84 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 PRO A 85 C - N - CD ANGL. DEV. = -22.0 DEGREES REMARK 500 ASP A 97 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 LEU A 103 CB - CA - C ANGL. DEV. = 14.5 DEGREES REMARK 500 LEU A 103 N - CA - CB ANGL. DEV. = 14.0 DEGREES REMARK 500 LYS A 104 CB - CA - C ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG A 115 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 THR A 124 N - CA - CB ANGL. DEV. = 14.5 DEGREES REMARK 500 VAL A 129 CG1 - CB - CG2 ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG A 136 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 ARG A 136 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 149 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 LEU A 179 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 GLU A 180 N - CA - CB ANGL. DEV. = -14.2 DEGREES REMARK 500 TYR A 184 CB - CG - CD2 ANGL. DEV. = 3.8 DEGREES REMARK 500 HIS A 186 CB - CA - C ANGL. DEV. = 14.1 DEGREES REMARK 500 ILE A 188 CG1 - CB - CG2 ANGL. DEV. = 17.4 DEGREES REMARK 500 PHE A 193 N - CA - CB ANGL. DEV. = 13.7 DEGREES REMARK 500 THR A 194 N - CA - CB ANGL. DEV. = -13.4 DEGREES REMARK 500 PRO A 200 C - N - CD ANGL. DEV. = -14.8 DEGREES REMARK 500 LEU A 214 CB - CG - CD1 ANGL. DEV. = 10.3 DEGREES REMARK 500 HIS A 234 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 LEU A 236 CB - CA - C ANGL. DEV. = -11.8 DEGREES REMARK 500 LEU A 236 N - CA - CB ANGL. DEV. = -12.9 DEGREES REMARK 500 LEU A 236 CA - CB - CG ANGL. DEV. = 17.5 DEGREES REMARK 500 VAL A 237 N - CA - CB ANGL. DEV. = 13.3 DEGREES REMARK 500 ASP A 240 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 LYS A 241 N - CA - CB ANGL. DEV. = -12.8 DEGREES REMARK 500 HIS A 251 CB - CA - C ANGL. DEV. = 18.5 DEGREES REMARK 500 MET A 277 CG - SD - CE ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 279 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 GLN A 289 CA - C - N ANGL. DEV. = -14.7 DEGREES REMARK 500 GLN A 289 O - C - N ANGL. DEV. = 14.0 DEGREES REMARK 500 THR A 290 N - CA - CB ANGL. DEV. = -12.1 DEGREES REMARK 500 PRO A 303 C - N - CD ANGL. DEV. = -12.8 DEGREES REMARK 500 TYR A 326 CB - CA - C ANGL. DEV. = -20.1 DEGREES REMARK 500 LEU A 328 CA - CB - CG ANGL. DEV. = -16.3 DEGREES REMARK 500 LEU A 328 CB - CG - CD2 ANGL. DEV. = 10.3 DEGREES REMARK 500 THR A 333 N - CA - CB ANGL. DEV. = 14.8 DEGREES REMARK 500 MET A 339 CA - CB - CG ANGL. DEV. = 11.2 DEGREES REMARK 500 VAL A 348 CB - CA - C ANGL. DEV. = 12.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 51 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 14 15.12 -155.81 REMARK 500 ALA A 27 -118.68 -142.17 REMARK 500 GLU A 28 102.62 153.60 REMARK 500 PHE A 38 79.19 16.72 REMARK 500 THR A 48 -164.98 -113.38 REMARK 500 THR A 57 -77.36 -48.57 REMARK 500 LEU A 58 3.21 -59.06 REMARK 500 PHE A 61 -108.77 -24.54 REMARK 500 ASN A 62 44.78 -161.74 REMARK 500 SER A 70 -59.88 -141.04 REMARK 500 ARG A 76 -65.12 -20.99 REMARK 500 VAL A 77 -74.49 -38.30 REMARK 500 LEU A 82 -81.62 -83.31 REMARK 500 ARG A 83 -23.39 126.20 REMARK 500 SER A 123 177.22 73.26 REMARK 500 THR A 124 -166.43 -101.31 REMARK 500 THR A 126 -157.78 -129.32 REMARK 500 VAL A 129 61.04 -108.58 REMARK 500 LEU A 130 157.05 -49.64 REMARK 500 ILE A 131 -144.37 -137.12 REMARK 500 ASN A 132 -143.79 -166.56 REMARK 500 LYS A 134 -48.27 179.25 REMARK 500 SER A 147 55.07 -179.17 REMARK 500 SER A 159 98.46 -40.91 REMARK 500 ALA A 166 147.26 174.35 REMARK 500 THR A 170 -39.65 -39.44 REMARK 500 THR A 172 -35.23 -31.08 REMARK 500 ALA A 173 -78.77 -85.14 REMARK 500 PRO A 175 19.75 -61.41 REMARK 500 ASN A 177 -73.53 -44.21 REMARK 500 ILE A 188 175.66 167.57 REMARK 500 ASN A 190 29.62 136.84 REMARK 500 ALA A 191 -162.53 -62.68 REMARK 500 LEU A 197 -24.49 -29.61 REMARK 500 SER A 198 -127.40 55.57 REMARK 500 LEU A 205 30.65 -93.88 REMARK 500 TYR A 206 -45.89 -141.31 REMARK 500 LYS A 207 -118.82 32.85 REMARK 500 ASP A 208 -25.74 -17.41 REMARK 500 HIS A 216 40.09 -84.35 REMARK 500 GLU A 225 -69.16 -25.90 REMARK 500 ASN A 235 105.15 -39.46 REMARK 500 LEU A 236 -157.41 172.57 REMARK 500 LYS A 241 -75.49 -75.11 REMARK 500 ALA A 243 -81.34 -49.57 REMARK 500 GLU A 250 -4.60 -37.94 REMARK 500 ALA A 252 -129.99 8.88 REMARK 500 VAL A 253 -141.37 -161.50 REMARK 500 THR A 272 -103.28 -116.59 REMARK 500 VAL A 275 96.22 -167.85 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LII RELATED DB: PDB REMARK 900 STRUCTURE OF T. GONDII ADENOSINE KINASE BOUND TO ADENOSINE 2 AND REMARK 900 AMP-PCP REMARK 900 RELATED ID: 1LIJ RELATED DB: PDB REMARK 900 STRUCTURE OF T. GONDII ADENOSINE KINASE BOUND TO PRODRUG 2 7- REMARK 900 IODOTUBERCIDIN AND AMP-PCP REMARK 900 RELATED ID: 1LIK RELATED DB: PDB REMARK 900 STRUCTURE OF T. GONDII ADENOSINE KINASE BOUND TO ADENOSINE DBREF 1LIO A 1 363 UNP Q9TVW2 ADK_TOXGO 1 363 SEQADV 1LIO THR A 126 UNP Q9TVW2 VAL 126 CONFLICT SEQADV 1LIO ILE A 150 UNP Q9TVW2 LEU 150 CONFLICT SEQADV 1LIO ASP A 240 UNP Q9TVW2 GLU 240 CONFLICT SEQADV 1LIO GLY A 327 UNP Q9TVW2 ALA 327 CONFLICT SEQRES 1 A 363 MET ALA VAL ASP SER SER ASN SER ALA THR GLY PRO MET SEQRES 2 A 363 ARG VAL PHE ALA ILE GLY ASN PRO ILE LEU ASP LEU VAL SEQRES 3 A 363 ALA GLU VAL PRO SER SER PHE LEU ASP GLU PHE PHE LEU SEQRES 4 A 363 LYS ARG GLY ASP ALA THR LEU ALA THR PRO GLU GLN MET SEQRES 5 A 363 ARG ILE TYR SER THR LEU ASP GLN PHE ASN PRO THR SER SEQRES 6 A 363 LEU PRO GLY GLY SER ALA LEU ASN SER VAL ARG VAL VAL SEQRES 7 A 363 GLN LYS LEU LEU ARG LYS PRO GLY SER ALA GLY TYR MET SEQRES 8 A 363 GLY ALA ILE GLY ASP ASP PRO ARG GLY GLN VAL LEU LYS SEQRES 9 A 363 GLU LEU CYS ASP LYS GLU GLY LEU ALA THR ARG PHE MET SEQRES 10 A 363 VAL ALA PRO GLY GLN SER THR GLY THR CYS ALA VAL LEU SEQRES 11 A 363 ILE ASN GLU LYS GLU ARG THR LEU CYS THR HIS LEU GLY SEQRES 12 A 363 ALA CYS GLY SER PHE ARG ILE PRO GLU ASP TRP THR THR SEQRES 13 A 363 PHE ALA SER GLY ALA LEU ILE PHE TYR ALA THR ALA TYR SEQRES 14 A 363 THR LEU THR ALA THR PRO LYS ASN ALA LEU GLU VAL ALA SEQRES 15 A 363 GLY TYR ALA HIS GLY ILE PRO ASN ALA ILE PHE THR LEU SEQRES 16 A 363 ASN LEU SER ALA PRO PHE CYS VAL GLU LEU TYR LYS ASP SEQRES 17 A 363 ALA MET GLN SER LEU LEU LEU HIS THR ASN ILE LEU PHE SEQRES 18 A 363 GLY ASN GLU GLU GLU PHE ALA HIS LEU ALA LYS VAL HIS SEQRES 19 A 363 ASN LEU VAL ALA ALA ASP LYS THR ALA LEU SER THR ALA SEQRES 20 A 363 ASN LYS GLU HIS ALA VAL GLU VAL CYS THR GLY ALA LEU SEQRES 21 A 363 ARG LEU LEU THR ALA GLY GLN ASN THR GLY ALA THR LYS SEQRES 22 A 363 LEU VAL VAL MET THR ARG GLY HIS ASN PRO VAL ILE ALA SEQRES 23 A 363 ALA GLU GLN THR ALA ASP GLY THR VAL VAL VAL HIS GLU SEQRES 24 A 363 VAL GLY VAL PRO VAL VAL ALA ALA GLU LYS ILE VAL ASP SEQRES 25 A 363 THR ASN GLY ALA GLY ASP ALA PHE VAL GLY GLY PHE LEU SEQRES 26 A 363 TYR GLY LEU SER GLN GLY LYS THR VAL LYS GLN CYS ILE SEQRES 27 A 363 MET CYS GLY ASN ALA CYS ALA GLN ASP VAL ILE GLN HIS SEQRES 28 A 363 VAL GLY PHE SER LEU SER PHE THR SER LEU PRO CYS FORMUL 2 HOH *179(H2 O) HELIX 1 1 PRO A 30 PHE A 37 1 8 HELIX 2 2 THR A 48 MET A 52 5 5 HELIX 3 3 ARG A 53 LEU A 58 1 6 HELIX 4 4 SER A 70 ARG A 83 1 14 HELIX 5 5 ASP A 97 GLU A 110 1 14 HELIX 6 6 ASP A 153 ALA A 158 1 6 HELIX 7 7 TYR A 169 ALA A 173 5 5 HELIX 8 8 LYS A 176 VAL A 181 1 6 HELIX 9 9 ALA A 199 LEU A 205 1 7 HELIX 10 10 TYR A 206 ASP A 208 5 3 HELIX 11 11 ALA A 209 HIS A 216 1 8 HELIX 12 12 GLU A 224 LYS A 232 1 9 HELIX 13 13 ASP A 240 GLU A 250 1 11 HELIX 14 14 ALA A 316 GLY A 327 1 12 HELIX 15 15 THR A 333 GLN A 346 1 14 SHEET 1 A 6 GLY A 89 MET A 91 0 SHEET 2 A 6 PHE A 16 ILE A 18 1 N ALA A 17 O MET A 91 SHEET 3 A 6 ILE A 163 THR A 167 1 O ILE A 163 N PHE A 16 SHEET 4 A 6 ILE A 192 ASN A 196 1 O ILE A 192 N PHE A 164 SHEET 5 A 6 ILE A 219 ASN A 223 1 O ILE A 219 N LEU A 195 SHEET 6 A 6 VAL A 276 THR A 278 1 O THR A 278 N GLY A 222 SHEET 1 B 5 ALA A 44 LEU A 46 0 SHEET 2 B 5 THR A 137 THR A 140 1 O THR A 140 N THR A 45 SHEET 3 B 5 THR A 126 LEU A 130 -1 N ALA A 128 O CYS A 139 SHEET 4 B 5 ILE A 22 ASP A 24 1 N LEU A 23 O CYS A 127 SHEET 5 B 5 PRO A 67 GLY A 68 -1 O GLY A 68 N ILE A 22 SHEET 1 C 2 ILE A 94 GLY A 95 0 SHEET 2 C 2 VAL A 118 ALA A 119 1 O ALA A 119 N ILE A 94 SHEET 1 D 2 VAL A 284 ILE A 285 0 SHEET 2 D 2 GLU A 299 VAL A 300 -1 O VAL A 300 N VAL A 284 SHEET 1 E 2 GLN A 289 THR A 290 0 SHEET 2 E 2 THR A 294 VAL A 295 -1 O THR A 294 N THR A 290 CISPEP 1 ILE A 188 PRO A 189 0 -0.23 CRYST1 47.100 68.000 56.800 90.00 100.80 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021231 0.000000 0.004050 0.00000 SCALE2 0.000000 0.014706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017923 0.00000