PDB Short entry for 1LJV HEADER HORMONE/GROWTH FACTOR 22-APR-02 1LJV TITLE BOVINE PANCREATIC POLYPEPTIDE BOUND TO DPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANCREATIC HORMONE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PANCREATIC POLYPEPTIDE, PP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PUBK19 KEYWDS NMR MICELLE PEPTIDE HORMONE, HORMONE-GROWTH FACTOR COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.LERCH,V.GAFNER,R.BADER,B.CHRISTEN,O.ZERBE REVDAT 4 23-FEB-22 1LJV 1 REMARK LINK REVDAT 3 24-FEB-09 1LJV 1 VERSN REVDAT 2 01-APR-03 1LJV 1 JRNL REVDAT 1 09-OCT-02 1LJV 0 JRNL AUTH M.LERCH,V.GAFNER,R.BADER,B.CHRISTEN,G.FOLKERS,O.ZERBE JRNL TITL BOVINE PANCREATIC POLYPEPTIDE (BPP) UNDERGOES SIGNIFICANT JRNL TITL 2 CHANGES IN CONFORMATION AND DYNAMICS UPON BINDING TO DPC JRNL TITL 3 MICELLES. JRNL REF J.MOL.BIOL. V. 322 1117 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12367532 JRNL DOI 10.1016/S0022-2836(02)00889-6 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, AMBER 6 REMARK 3 AUTHORS : BRUKER (XWINNMR), P. KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 441 NOE-BASED DISTANCE RESTRAINTS, 137 REMARK 3 TORSION ANGLE RESTRAINTS REMARK 4 REMARK 4 1LJV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-02. REMARK 100 THE DEPOSITION ID IS D_1000016008. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 3MM BPP, 300MM D-38 DPC REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; E-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.53, DYANA 1.5 REMARK 210 METHOD USED : SIMULATED ANNEALING RESTRAINT REMARK 210 ENERGY MINIMIZATION WITH REMARK 210 EXPLICIT WATER REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY, STRUCTURES REMARK 210 WITH FAVORABLE NON-BOND ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 3 111.75 -167.12 REMARK 500 1 GLU A 4 75.69 36.41 REMARK 500 1 TYR A 7 94.62 -44.44 REMARK 500 1 ASP A 10 59.26 -153.16 REMARK 500 1 THR A 32 16.36 58.46 REMARK 500 2 LEU A 3 65.61 -166.80 REMARK 500 2 GLU A 4 76.61 54.85 REMARK 500 2 ASN A 11 92.55 -174.97 REMARK 500 3 LEU A 3 80.98 44.68 REMARK 500 3 GLU A 6 112.26 69.12 REMARK 500 3 ASN A 11 87.38 61.72 REMARK 500 3 ALA A 12 159.16 63.76 REMARK 500 4 ASN A 11 82.14 -167.26 REMARK 500 4 ARG A 33 101.48 -43.93 REMARK 500 5 GLU A 4 89.15 53.58 REMARK 500 5 ASN A 11 84.96 53.55 REMARK 500 5 THR A 13 152.54 -47.76 REMARK 500 5 GLU A 15 -104.50 -94.77 REMARK 500 5 ARG A 33 101.08 -47.29 REMARK 500 5 ARG A 35 165.14 64.08 REMARK 500 6 LEU A 3 99.58 -57.15 REMARK 500 6 ASN A 11 89.20 -160.41 REMARK 500 7 GLU A 6 89.05 52.79 REMARK 500 7 TYR A 7 74.28 -116.50 REMARK 500 7 ASN A 11 75.54 -168.00 REMARK 500 7 ARG A 33 100.46 -45.15 REMARK 500 8 GLU A 4 152.52 66.38 REMARK 500 8 ASN A 11 79.33 -169.23 REMARK 500 8 THR A 13 152.66 -48.64 REMARK 500 9 GLU A 4 152.52 66.38 REMARK 500 9 ASN A 11 79.33 -169.23 REMARK 500 9 THR A 13 152.66 -48.64 REMARK 500 10 GLU A 4 151.95 66.73 REMARK 500 10 ASN A 11 75.73 -165.60 REMARK 500 11 PRO A 2 45.76 -74.22 REMARK 500 11 GLU A 4 78.59 -164.60 REMARK 500 11 GLU A 6 169.48 55.74 REMARK 500 11 TYR A 7 87.25 -157.34 REMARK 500 11 ASN A 11 96.99 -168.21 REMARK 500 11 ARG A 33 99.16 -49.58 REMARK 500 12 LEU A 3 178.35 58.03 REMARK 500 12 GLU A 6 -179.25 -55.57 REMARK 500 12 ASN A 11 81.64 -153.79 REMARK 500 12 ARG A 35 86.15 -154.83 REMARK 500 13 PRO A 2 -89.38 -72.88 REMARK 500 13 GLU A 6 89.17 63.99 REMARK 500 13 ASP A 10 80.80 -164.57 REMARK 500 13 ASN A 11 101.19 -168.68 REMARK 500 13 THR A 13 150.49 -42.57 REMARK 500 13 ALA A 22 -70.78 -56.56 REMARK 500 REMARK 500 THIS ENTRY HAS 78 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 37 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BBA RELATED DB: PDB REMARK 900 THE SAME MOLECULE IN SOLUTION REMARK 900 RELATED ID: 1F8P RELATED DB: PDB REMARK 900 PEPTIDE FROM THE SAME FAMILY UNDER SIMILIAR CONDITIONS REMARK 900 RELATED ID: 1ICY RELATED DB: PDB REMARK 900 PEPTIDE-MUTANT FROM THE SAME FAMILY UNDER SIMILIAR CONDITIONS DBREF 1LJV A 1 36 UNP P01302 PAHO_BOVIN 30 65 SEQRES 1 A 37 ALA PRO LEU GLU PRO GLU TYR PRO GLY ASP ASN ALA THR SEQRES 2 A 37 PRO GLU GLN MET ALA GLN TYR ALA ALA GLU LEU ARG ARG SEQRES 3 A 37 TYR ILE ASN MET LEU THR ARG PRO ARG TYR NH2 HET NH2 A 37 3 HETNAM NH2 AMINO GROUP FORMUL 1 NH2 H2 N HELIX 1 1 THR A 13 THR A 32 1 20 LINK C TYR A 36 N NH2 A 37 1555 1555 1.32 SITE 1 AC1 1 TYR A 36 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000