PDB Short entry for 1LLM HEADER TRANSCRIPTION/DNA 29-APR-02 1LLM TITLE CRYSTAL STRUCTURE OF A ZIF23-GCN4 CHIMERA BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*TP*CP*CP*CP*AP*CP*GP*CP*GP*TP*GP*GP*G)-3'; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CHIMERA OF ZIF23-GCN4; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE ZIF23 SECTION OF THE CHIMERA IS RESIDUES 2-50 AND COMPND 10 IS DERIVED FROM ZIF268. THE GCN4 SECTION IS RESIDUES 60-88. SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: MUS MUSCULUS, SACCHAROMYCES CEREVISIAE; SOURCE 5 ORGANISM_COMMON: HOUSE MOUSE, BAKER'S YEAST; SOURCE 6 ORGANISM_TAXID: 10090, 4932; SOURCE 7 STRAIN: ,; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 PLYSS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET21D KEYWDS DIMERIZATION, DNA RECOGNITION, LEUCINE ZIPPER, STRUCTURE-BASED KEYWDS 2 DESIGN, ZINC FINGERS, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.A.WOLFE,R.A.GRANT,C.O.PABO REVDAT 4 21-DEC-22 1LLM 1 REMARK SEQADV LINK REVDAT 3 16-AUG-17 1LLM 1 SOURCE REMARK REVDAT 2 24-FEB-09 1LLM 1 VERSN REVDAT 1 30-SEP-03 1LLM 0 JRNL AUTH S.A.WOLFE,R.A.GRANT,C.O.PABO JRNL TITL STRUCTURE OF A DESIGNED DIMERIC ZINC FINGER PROTEIN BOUND TO JRNL TITL 2 DNA. JRNL REF BIOCHEMISTRY V. 42 13401 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 14621985 JRNL DOI 10.1021/BI034830B REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.A.WOLFE,E.I.RAMM,C.O.PABO REMARK 1 TITL COMBINING STRUCTURE-BASED DESIGN WITH PHAGE DISPLAY TO REMARK 1 TITL 2 CREATE NEW CYS(2)HIS(2) ZINC FINGER DIMERS REMARK 1 REF STRUCTURE V. 8 739 2000 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(00)00161-1 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 77251 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 7807 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9937 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1130 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1437 REMARK 3 NUCLEIC ACID ATOMS : 526 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 312 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.620 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.030 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.700 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.900 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.000 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : DNA-RNA.PARAM REMARK 3 PARAMETER FILE 3 : PARAM19.SOL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LLM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-02. REMARK 100 THE DEPOSITION ID IS D_1000016059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-00; 24-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 133; 133 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; Y REMARK 200 RADIATION SOURCE : ROTATING ANODE; NSLS REMARK 200 BEAMLINE : NULL; X4A REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54; 0.9999 REMARK 200 MONOCHROMATOR : YALE MIRRORS; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77251 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS PROPANE, MAGNESIUM CHLORIDE, REMARK 280 AMMONIUM ACETATE, PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.56433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.12867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.12867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.56433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG C 188 REMARK 465 GLY D 286 REMARK 465 GLU D 287 REMARK 465 ARG D 288 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 2 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC A 3 O3' - P - OP1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG C 149 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 149 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG C 149 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG C 149 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS C 155 -59.18 -122.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC A 2 0.09 SIDE CHAIN REMARK 500 DC A 8 0.07 SIDE CHAIN REMARK 500 DC B 28 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 106 SG REMARK 620 2 CYS C 109 SG 116.8 REMARK 620 3 HIS C 122 NE2 110.3 107.3 REMARK 620 4 HIS C 126 NE2 105.3 117.8 97.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 134 SG REMARK 620 2 CYS C 137 SG 116.9 REMARK 620 3 HIS C 150 NE2 114.0 104.5 REMARK 620 4 HIS C 155 NE2 99.6 117.9 103.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 206 SG REMARK 620 2 CYS D 209 SG 116.3 REMARK 620 3 HIS D 222 NE2 108.8 106.6 REMARK 620 4 HIS D 226 NE2 108.6 113.3 102.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 234 SG REMARK 620 2 CYS D 237 SG 119.4 REMARK 620 3 HIS D 250 NE2 111.7 102.2 REMARK 620 4 HIS D 255 NE2 102.2 116.8 103.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AAY RELATED DB: PDB REMARK 900 ZIF268/DNA STRUCTURE AT 1.6 ANGSTROMS REMARK 900 RELATED ID: 1ZAA RELATED DB: PDB REMARK 900 ZIF268/DNA STRUCTURE AT 2.2 ANGSTROMS REMARK 900 RELATED ID: 1YSA RELATED DB: PDB REMARK 900 GCN4/DNA(AP-1) STRUCTURE REMARK 900 RELATED ID: 1G2D RELATED DB: PDB REMARK 900 ZINC FINGER STRUCTURE WITH INTERFINGER INTERACTIONS REMARK 900 RELATED ID: 1G2F RELATED DB: PDB REMARK 900 ZINC FINGER STRUCTURE WITH INTERFINGER INTERACTIONS REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES C 151-159 AND D 251-259 ARE LINKERS REMARK 999 BETWEEN THE ZIF23 AND GCN4. DBREF 1LLM C 102 150 UNP P08046 EGR1_MOUSE 364 412 DBREF 1LLM D 202 250 UNP P08046 EGR1_MOUSE 364 412 DBREF 1LLM C 160 188 UNP P03069 GCN4_YEAST 253 281 DBREF 1LLM D 260 288 UNP P03069 GCN4_YEAST 253 281 DBREF 1LLM A 1 13 PDB 1LLM 1LLM 1 13 DBREF 1LLM B 21 33 PDB 1LLM 1LLM 21 33 SEQADV 1LLM MET C 101 UNP P08046 INITIATING METHIONINE SEQADV 1LLM ARG C 151 UNP P08046 SEE REMARK 999 SEQADV 1LLM ASP C 152 UNP P08046 SEE REMARK 999 SEQADV 1LLM ILE C 153 UNP P08046 SEE REMARK 999 SEQADV 1LLM GLN C 154 UNP P08046 SEE REMARK 999 SEQADV 1LLM HIS C 155 UNP P08046 SEE REMARK 999 SEQADV 1LLM ILE C 156 UNP P08046 SEE REMARK 999 SEQADV 1LLM LEU C 157 UNP P08046 SEE REMARK 999 SEQADV 1LLM PRO C 158 UNP P08046 SEE REMARK 999 SEQADV 1LLM ILE C 159 UNP P08046 SEE REMARK 999 SEQADV 1LLM MET D 201 UNP P08046 INITIATING METHIONINE SEQADV 1LLM ARG D 251 UNP P08046 SEE REMARK 999 SEQADV 1LLM ASP D 252 UNP P08046 SEE REMARK 999 SEQADV 1LLM ILE D 253 UNP P08046 SEE REMARK 999 SEQADV 1LLM GLN D 254 UNP P08046 SEE REMARK 999 SEQADV 1LLM HIS D 255 UNP P08046 SEE REMARK 999 SEQADV 1LLM ILE D 256 UNP P08046 SEE REMARK 999 SEQADV 1LLM LEU D 257 UNP P08046 SEE REMARK 999 SEQADV 1LLM PRO D 258 UNP P08046 SEE REMARK 999 SEQADV 1LLM ILE D 259 UNP P08046 SEE REMARK 999 SEQRES 1 A 13 DT DC DC DC DA DC DG DC DG DT DG DG DG SEQRES 1 B 13 DT DC DC DC DA DC DG DC DG DT DG DG DG SEQRES 1 C 88 MET LYS PRO PHE GLN CYS ARG ILE CYS MET ARG ASN PHE SEQRES 2 C 88 SER ARG SER ASP HIS LEU THR THR HIS ILE ARG THR HIS SEQRES 3 C 88 THR GLY GLU LYS PRO PHE ALA CYS ASP ILE CYS GLY ARG SEQRES 4 C 88 LYS PHE ALA ARG SER ASP GLU ARG LYS ARG HIS ARG ASP SEQRES 5 C 88 ILE GLN HIS ILE LEU PRO ILE LEU GLU ASP LYS VAL GLU SEQRES 6 C 88 GLU LEU LEU SER LYS ASN TYR HIS LEU GLU ASN GLU VAL SEQRES 7 C 88 ALA ARG LEU LYS LYS LEU VAL GLY GLU ARG SEQRES 1 D 88 MET LYS PRO PHE GLN CYS ARG ILE CYS MET ARG ASN PHE SEQRES 2 D 88 SER ARG SER ASP HIS LEU THR THR HIS ILE ARG THR HIS SEQRES 3 D 88 THR GLY GLU LYS PRO PHE ALA CYS ASP ILE CYS GLY ARG SEQRES 4 D 88 LYS PHE ALA ARG SER ASP GLU ARG LYS ARG HIS ARG ASP SEQRES 5 D 88 ILE GLN HIS ILE LEU PRO ILE LEU GLU ASP LYS VAL GLU SEQRES 6 D 88 GLU LEU LEU SER LYS ASN TYR HIS LEU GLU ASN GLU VAL SEQRES 7 D 88 ALA ARG LEU LYS LYS LEU VAL GLY GLU ARG HET ZN C 301 1 HET ZN C 302 1 HET ZN D 303 1 HET ZN D 304 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *312(H2 O) HELIX 1 1 ARG C 115 GLY C 128 1 14 HELIX 2 2 ARG C 143 HIS C 155 1 13 HELIX 3 3 HIS C 155 VAL C 185 1 31 HELIX 4 4 ARG D 215 GLY D 228 1 14 HELIX 5 5 ARG D 243 HIS D 255 1 13 HELIX 6 6 HIS D 255 VAL D 285 1 31 SHEET 1 A 2 PHE C 104 GLN C 105 0 SHEET 2 A 2 ASN C 112 PHE C 113 -1 O PHE C 113 N PHE C 104 SHEET 1 B 2 PHE C 132 ALA C 133 0 SHEET 2 B 2 LYS C 140 PHE C 141 -1 O PHE C 141 N PHE C 132 SHEET 1 C 2 PHE D 204 GLN D 205 0 SHEET 2 C 2 ASN D 212 PHE D 213 -1 O PHE D 213 N PHE D 204 SHEET 1 D 2 PHE D 232 ALA D 233 0 SHEET 2 D 2 LYS D 240 PHE D 241 -1 O PHE D 241 N PHE D 232 LINK SG CYS C 106 ZN ZN C 301 1555 1555 2.32 LINK SG CYS C 109 ZN ZN C 301 1555 1555 2.27 LINK NE2 HIS C 122 ZN ZN C 301 1555 1555 2.06 LINK NE2 HIS C 126 ZN ZN C 301 1555 1555 2.04 LINK SG CYS C 134 ZN ZN C 302 1555 1555 2.35 LINK SG CYS C 137 ZN ZN C 302 1555 1555 2.22 LINK NE2 HIS C 150 ZN ZN C 302 1555 1555 2.16 LINK NE2 HIS C 155 ZN ZN C 302 1555 1555 2.11 LINK SG CYS D 206 ZN ZN D 303 1555 1555 2.34 LINK SG CYS D 209 ZN ZN D 303 1555 1555 2.31 LINK NE2 HIS D 222 ZN ZN D 303 1555 1555 2.14 LINK NE2 HIS D 226 ZN ZN D 303 1555 1555 2.02 LINK SG CYS D 234 ZN ZN D 304 1555 1555 2.29 LINK SG CYS D 237 ZN ZN D 304 1555 1555 2.31 LINK NE2 HIS D 250 ZN ZN D 304 1555 1555 2.15 LINK NE2 HIS D 255 ZN ZN D 304 1555 1555 2.07 SITE 1 AC1 4 CYS C 106 CYS C 109 HIS C 122 HIS C 126 SITE 1 AC2 4 CYS C 134 CYS C 137 HIS C 150 HIS C 155 SITE 1 AC3 4 CYS D 206 CYS D 209 HIS D 222 HIS D 226 SITE 1 AC4 4 CYS D 234 CYS D 237 HIS D 250 HIS D 255 CRYST1 87.398 87.398 118.693 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011442 0.006606 0.000000 0.00000 SCALE2 0.000000 0.013212 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008425 0.00000