PDB Short entry for 1LMJ HEADER STRUCTURAL PROTEIN 02-MAY-02 1LMJ TITLE NMR STUDY OF THE FIBRILLIN-1 CBEGF12-13 PAIR OF CA2+ BINDING EPIDERMAL TITLE 2 GROWTH FACTOR-LIKE DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRILLIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CBEGF12-13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FBN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: NM554 AND BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS EGF, CALCIUM, MICROFIBRIL, NEONATAL, MARFAN SYNDROME, CONNECTIVE KEYWDS 2 TISSUE, EXTRACELLULAR MATRIX, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR R.S.SMALLRIDGE,P.WHITEMAN,J.M.WERNER,I.D.CAMPBELL,P.A.HANDFORD, AUTHOR 2 A.K.DOWNING REVDAT 3 23-FEB-22 1LMJ 1 REMARK LINK REVDAT 2 24-FEB-09 1LMJ 1 VERSN REVDAT 1 29-APR-03 1LMJ 0 JRNL AUTH R.S.SMALLRIDGE,P.WHITEMAN,J.M.WERNER,I.D.CAMPBELL, JRNL AUTH 2 P.A.HANDFORD,A.K.DOWNING JRNL TITL SOLUTION STRUCTURE AND DYNAMICS OF A CALCIUM BINDING JRNL TITL 2 EPIDERMAL GROWTH FACTOR-LIKE DOMAIN PAIR FROM THE NEONATAL JRNL TITL 3 REGION OF HUMAN FIBRILLIN-1. JRNL REF J.BIOL.CHEM. V. 278 12199 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12511552 JRNL DOI 10.1074/JBC.M208266200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.81, X-PLOR 3.81 REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1892 DISTANCE CONSTRAINTS INCLUDING 411 AMBIGUOUS CONSTRAINTS, 26 REMARK 3 TORSION ANGLE PHI RESTRAINTS, 24 RESTRAINTS FOR 12 HYDROGEN BONDS REMARK 3 REMARK 3 RMSD FROM EXPERIMENTAL RESTRAINTS REMARK 3 ALL 0.013+/-0.001 REMARK 3 (1932) REMARK 3 INTRARESIDUE 0.009+/-0.002 REMARK 3 (504) REMARK 3 SEQUENTIAL 0.011+/-0.002 REMARK 3 (388) REMARK 3 SHORT-RANGE REMARK 3 (I-J<=4) (211) 0.015+/-0.003 REMARK 3 LONG-RANGE 0.013+/-0.002 REMARK 3 (378) REMARK 3 AMBIGUOUS 0.015+/-0.002 REMARK 3 (411) REMARK 3 H-BONDS 0.014+/-0.004 REMARK 3 (24) REMARK 3 CALCIUM 0.012+/-0.005 REMARK 3 (16) REMARK 3 RMSD PHI REST. 0.177+/-0.093 REMARK 3 (26) REMARK 4 REMARK 4 1LMJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-02. REMARK 100 THE DEPOSITION ID IS D_1000016086. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 306 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 MM CACL2, 4.55 MM TRIS REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM CACL2, 4.55 MM TRIS, 3 MM REMARK 210 PROTEIN; 20 MM CACL2, 4.55 MM REMARK 210 TRIS, 3.6 MM PROTEIN; 20 MM REMARK 210 CACL2, 4.55 MM TRIS, 3.8 MM 15N- REMARK 210 PROTEIN REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HMQC-J; HSQC REMARK 210 (SLOW HN) REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : OMEGA REMARK 210 SPECTROMETER MANUFACTURER : GE REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 6 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 49 H GLN A 52 1.52 REMARK 500 O GLY A 34 H ILE A 48 1.54 REMARK 500 O GLY A 38 H MET A 42 1.56 REMARK 500 O ASP A 13 H GLY A 16 1.57 REMARK 500 O ILE A 5 HD22 ASN A 22 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 4 68.52 39.20 REMARK 500 1 ARG A 17 -50.39 173.21 REMARK 500 1 ASP A 26 -178.38 167.30 REMARK 500 1 LYS A 30 74.33 -117.88 REMARK 500 1 CYS A 31 -179.71 -46.06 REMARK 500 1 ASP A 32 -141.53 -106.62 REMARK 500 1 GLU A 33 -92.32 -23.10 REMARK 500 1 SER A 37 114.76 -33.96 REMARK 500 1 MET A 42 -81.23 178.73 REMARK 500 1 LYS A 43 33.49 178.01 REMARK 500 1 ASN A 44 -157.97 -85.21 REMARK 500 1 ASP A 47 131.01 -10.91 REMARK 500 1 CYS A 58 26.98 44.01 REMARK 500 1 THR A 66 -165.55 -120.01 REMARK 500 1 SER A 69 -178.67 169.95 REMARK 500 1 PRO A 75 -169.30 -71.85 REMARK 500 1 PRO A 76 178.81 -43.22 REMARK 500 1 HIS A 78 -127.95 -104.23 REMARK 500 1 GLN A 79 59.90 -150.53 REMARK 500 1 ASN A 83 21.21 -146.95 REMARK 500 1 SER A 85 91.93 75.57 REMARK 500 1 ALA A 86 103.81 150.61 REMARK 500 2 GLU A 7 -52.91 68.53 REMARK 500 2 ILE A 10 -37.69 -39.92 REMARK 500 2 ARG A 17 -50.79 178.42 REMARK 500 2 ASP A 26 -167.39 169.13 REMARK 500 2 GLU A 28 -145.59 -144.74 REMARK 500 2 LYS A 30 67.82 -105.82 REMARK 500 2 CYS A 31 175.90 -45.40 REMARK 500 2 ASP A 32 -93.15 -72.86 REMARK 500 2 GLU A 33 -39.87 -141.95 REMARK 500 2 MET A 40 -31.79 176.69 REMARK 500 2 MET A 42 -21.15 104.62 REMARK 500 2 LYS A 43 100.32 -171.38 REMARK 500 2 ASN A 44 33.72 -158.98 REMARK 500 2 CYS A 45 106.74 9.52 REMARK 500 2 ASP A 47 105.30 -2.10 REMARK 500 2 ILE A 48 174.46 -50.55 REMARK 500 2 CYS A 58 24.66 48.97 REMARK 500 2 ARG A 59 61.52 -65.22 REMARK 500 2 ASN A 65 109.77 -47.83 REMARK 500 2 SER A 69 178.61 158.06 REMARK 500 2 PRO A 76 -28.18 -35.37 REMARK 500 2 HIS A 78 -129.20 -91.85 REMARK 500 2 ASN A 83 -1.24 72.62 REMARK 500 2 SER A 85 84.79 65.77 REMARK 500 2 ALA A 86 98.45 156.59 REMARK 500 3 ASP A 4 66.54 -177.90 REMARK 500 3 ARG A 17 -29.70 174.11 REMARK 500 3 ASP A 26 -174.22 167.42 REMARK 500 REMARK 500 THIS ENTRY HAS 566 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 4 OD1 REMARK 620 2 ILE A 5 O 115.3 REMARK 620 3 GLU A 7 OE2 139.8 54.9 REMARK 620 4 GLU A 7 OE1 168.4 66.9 51.4 REMARK 620 5 ASN A 22 OD1 68.8 89.5 139.5 100.2 REMARK 620 6 ASN A 22 ND2 115.8 57.4 91.9 54.8 49.1 REMARK 620 7 THR A 23 O 78.0 155.3 101.2 104.5 115.1 137.9 REMARK 620 8 THR A 23 N 93.6 137.6 119.7 79.0 72.0 82.8 55.9 REMARK 620 9 ASP A 26 O 122.2 120.3 70.8 60.3 124.6 106.7 44.4 54.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD2 REMARK 620 2 ILE A 48 O 108.2 REMARK 620 3 GLU A 50 OE1 138.4 103.0 REMARK 620 4 GLU A 50 OE2 154.8 86.2 51.5 REMARK 620 5 ASN A 65 OD1 66.0 98.3 83.0 133.8 REMARK 620 6 ASN A 65 ND2 105.2 57.9 69.5 100.0 49.2 REMARK 620 7 THR A 66 O 54.9 161.6 89.2 112.2 69.2 115.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EMO RELATED DB: PDB REMARK 900 FIBRILLIN-1 CBEGF32-33 REMARK 900 RELATED ID: 1HJ7 RELATED DB: PDB REMARK 900 LDL RECEPTOR CBEGF AB DBREF 1LMJ A 3 88 UNP P35555 FBN1_HUMAN 1200 1285 SEQRES 1 A 86 THR ASP ILE ASP GLU CYS ARG ILE SER PRO ASP LEU CYS SEQRES 2 A 86 GLY ARG GLY GLN CYS VAL ASN THR PRO GLY ASP PHE GLU SEQRES 3 A 86 CYS LYS CYS ASP GLU GLY TYR GLU SER GLY PHE MET MET SEQRES 4 A 86 MET LYS ASN CYS MET ASP ILE ASP GLU CYS GLN ARG ASP SEQRES 5 A 86 PRO LEU LEU CYS ARG GLY GLY VAL CYS HIS ASN THR GLU SEQRES 6 A 86 GLY SER TYR ARG CYS GLU CYS PRO PRO GLY HIS GLN LEU SEQRES 7 A 86 SER PRO ASN ILE SER ALA CYS ILE HET CA A 101 1 HET CA A 102 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) HELIX 1 1 ASP A 49 ASP A 54 1 6 SHEET 1 A 2 CYS A 20 THR A 23 0 SHEET 2 A 2 ASP A 26 CYS A 29 -1 O GLU A 28 N VAL A 21 SHEET 1 B 2 TYR A 35 SER A 37 0 SHEET 2 B 2 CYS A 45 ASP A 47 -1 O MET A 46 N GLU A 36 SHEET 1 C 2 VAL A 62 THR A 66 0 SHEET 2 C 2 SER A 69 GLU A 73 -1 O ARG A 71 N HIS A 64 SSBOND 1 CYS A 8 CYS A 20 1555 1555 2.03 SSBOND 2 CYS A 15 CYS A 29 1555 1555 2.03 SSBOND 3 CYS A 31 CYS A 45 1555 1555 2.04 SSBOND 4 CYS A 51 CYS A 63 1555 1555 2.03 SSBOND 5 CYS A 58 CYS A 72 1555 1555 2.03 SSBOND 6 CYS A 74 CYS A 87 1555 1555 2.03 LINK OD1 ASP A 4 CA CA A 101 1555 1555 2.58 LINK O ILE A 5 CA CA A 101 1555 1555 2.45 LINK OE2 GLU A 7 CA CA A 101 1555 1555 2.61 LINK OE1 GLU A 7 CA CA A 101 1555 1555 2.45 LINK OD1 ASN A 22 CA CA A 101 1555 1555 2.60 LINK ND2 ASN A 22 CA CA A 101 1555 1555 2.79 LINK O THR A 23 CA CA A 101 1555 1555 2.45 LINK N THR A 23 CA CA A 101 1555 1555 3.23 LINK O ASP A 26 CA CA A 101 1555 1555 3.34 LINK OD2 ASP A 47 CA CA A 102 1555 1555 2.45 LINK O ILE A 48 CA CA A 102 1555 1555 2.44 LINK OE1 GLU A 50 CA CA A 102 1555 1555 2.44 LINK OE2 GLU A 50 CA CA A 102 1555 1555 2.61 LINK OD1 ASN A 65 CA CA A 102 1555 1555 2.45 LINK ND2 ASN A 65 CA CA A 102 1555 1555 2.87 LINK O THR A 66 CA CA A 102 1555 1555 2.61 CISPEP 1 CYS A 74 PRO A 75 1 1.00 CISPEP 2 CYS A 74 PRO A 75 2 1.26 CISPEP 3 CYS A 74 PRO A 75 3 1.15 CISPEP 4 CYS A 74 PRO A 75 4 1.05 CISPEP 5 CYS A 74 PRO A 75 5 1.17 CISPEP 6 CYS A 74 PRO A 75 6 1.28 CISPEP 7 CYS A 74 PRO A 75 7 1.07 CISPEP 8 CYS A 74 PRO A 75 8 0.99 CISPEP 9 CYS A 74 PRO A 75 9 1.43 CISPEP 10 CYS A 74 PRO A 75 10 1.01 CISPEP 11 CYS A 74 PRO A 75 11 1.46 CISPEP 12 CYS A 74 PRO A 75 12 0.83 CISPEP 13 CYS A 74 PRO A 75 13 0.96 CISPEP 14 CYS A 74 PRO A 75 14 1.18 CISPEP 15 CYS A 74 PRO A 75 15 0.86 CISPEP 16 CYS A 74 PRO A 75 16 1.38 CISPEP 17 CYS A 74 PRO A 75 17 1.04 CISPEP 18 CYS A 74 PRO A 75 18 1.10 CISPEP 19 CYS A 74 PRO A 75 19 1.02 CISPEP 20 CYS A 74 PRO A 75 20 1.07 CISPEP 21 CYS A 74 PRO A 75 21 0.98 CISPEP 22 CYS A 74 PRO A 75 22 0.92 CISPEP 23 CYS A 74 PRO A 75 23 1.18 CISPEP 24 CYS A 74 PRO A 75 24 1.13 CISPEP 25 CYS A 74 PRO A 75 25 1.09 SITE 1 AC1 6 ASP A 4 ILE A 5 GLU A 7 ASN A 22 SITE 2 AC1 6 THR A 23 ASP A 26 SITE 1 AC2 6 ASP A 47 ILE A 48 GLU A 50 ASN A 65 SITE 2 AC2 6 THR A 66 SER A 69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000