PDB Short entry for 1LR4 HEADER TRANSFERASE 14-MAY-02 1LR4 TITLE ROOM TEMPERATURE CRYSTAL STRUCTURE OF THE APO-FORM OF THE CATALYTIC TITLE 2 SUBUNIT OF PROTEIN KINASE CK2 FROM ZEA MAYS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE CK2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CASEIN KINASE II, ALPHA CHAIN; COMPND 5 EC: 2.7.1.37; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_TAXID: 4577; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PT7-7 KEYWDS PROTEIN KINASE, CK2, CASEIN KINASE 2, DUAL-COSUBSTRATE SPECIFICITY, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.NIEFIND,M.PUETTER,B.GUERRA,O.-G.ISSINGER,D.SCHOMBURG REVDAT 5 25-OCT-23 1LR4 1 REMARK REVDAT 4 11-OCT-17 1LR4 1 REMARK REVDAT 3 24-FEB-09 1LR4 1 VERSN REVDAT 2 08-MAR-05 1LR4 1 JRNL REVDAT 1 29-MAY-02 1LR4 0 SPRSDE 29-MAY-02 1LR4 1A6O JRNL AUTH C.W.YDE,I.ERMAKOVA,O.G.ISSINGER,K.NIEFIND JRNL TITL INCLINING THE PURINE BASE BINDING PLANE IN PROTEIN KINASE JRNL TITL 2 CK2 BY EXCHANGING THE FLANKING SIDE-CHAINS GENERATES A JRNL TITL 3 PREFERENCE FOR ATP AS A COSUBSTRATE. JRNL REF J.MOL.BIOL. V. 347 399 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15740749 JRNL DOI 10.1016/J.JMB.2005.01.003 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.NIEFIND,B.GUERRA,L.A.PINNA,O.-G.ISSINGER,D.SCHOMBURG REMARK 1 TITL CRYSTAL STRUCTURE OF THE CATALYTIC SUBUNIT OF PROTEIN KINASE REMARK 1 TITL 2 CK2 FROM ZEA MAYS AT 2.1 A RESOLUTION REMARK 1 REF EMBO J. V. 17 2451 1998 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 9564028 REMARK 1 DOI 10.1093/EMBOJ/17.9.2451 REMARK 1 REFERENCE 2 REMARK 1 AUTH B.GUERRA,K.NIEFIND,L.A.PINNA,D.SCHOMBURG,O.-G.ISSINGER REMARK 1 TITL EXPRESSION, PURIFICATION AND CRYSTALLIZATION OF THE REMARK 1 TITL 2 CATALYTIC SUBUNIT OF PROTEIN KINASE CK2 FROM ZEA MAYS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 54 143 1998 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 9761839 REMARK 1 DOI 10.1107/S0907444997010184 REMARK 1 REFERENCE 3 REMARK 1 AUTH K.NIEFIND,M.PUTTER,B.GUERRA,O.-G.ISSINGER,D.SCHOMBURG REMARK 1 TITL GTP PLUS WATER MIMIC ATP IN THE ACTIVE SITE OF PROTEIN REMARK 1 TITL 2 KINASE CK2 REMARK 1 REF NAT.STRUCT.BIOL. V. 6 1100 1999 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 10581548 REMARK 1 DOI 10.1038/70033 REMARK 1 REFERENCE 4 REMARK 1 AUTH K.NIEFIND,B.GUERRA,I.ERMAKOWA,O.-G.ISSINGER REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CHARACTERIZATION OF CRYSTALS REMARK 1 TITL 2 OF HUMAN PROTEIN KINASE CK2 REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 56 1680 2000 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11092945 REMARK 1 DOI 10.1107/S0907444900013627 REMARK 1 REFERENCE 5 REMARK 1 AUTH K.NIEFIND,B.GUERRA,I.ERMAKOWA,O.-G.ISSINGER REMARK 1 TITL CRYSTAL STRUCTURE OF HUMAN PROTEIN KINASE CK2: INSIGHTS INTO REMARK 1 TITL 2 BASIC PROPERTIES OF THE CK2 HOLOENZYME REMARK 1 REF EMBO J. V. 20 5320 2001 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 11574463 REMARK 1 DOI 10.1093/EMBOJ/20.19.5320 REMARK 1 REFERENCE 6 REMARK 1 AUTH B.BOLDYREFF,F.MEGGIO,G.DOBROWOLSKA,L.A.PINNA,O.-G.ISSINGER REMARK 1 TITL EXPRESSION AND CHARACTERIZATION OF A RECOMBINANT MAIZE CK-2 REMARK 1 TITL 2 ALPHA SUBUNIT REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V.1173 32 1993 REMARK 1 REFN ISSN 0006-3002 REMARK 1 PMID 8485151 REMARK 1 DOI 10.1016/0167-4781(93)90239-A REMARK 1 REFERENCE 7 REMARK 1 AUTH G.DOBROWOLSKA,B.BOLDYREFF,O.-G.ISSINGER REMARK 1 TITL CLONING AND SEQUENCING OF THE CASEIN KINASE 2 ALPHA SUBUNIT REMARK 1 TITL 2 FROM ZEA MAYS REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V.1129 139 1991 REMARK 1 REFN ISSN 0006-3002 REMARK 1 PMID 1756176 REMARK 1 DOI 10.1016/0167-4781(91)90230-J REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 23092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1247 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1523 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2727 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.27000 REMARK 3 B22 (A**2) : 2.20000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.32000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2848 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2563 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3848 ; 1.520 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5983 ; 1.287 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 4.069 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 552 ;15.714 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 408 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3109 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 593 ; 0.013 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 704 ; 0.248 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2508 ; 0.224 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 216 ; 0.215 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 10 ; 0.145 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.198 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.226 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.465 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): 1 ; 0.142 ; 0.500 REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1641 ; 0.926 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2669 ; 1.649 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1207 ; 2.340 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1179 ; 3.805 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1LR4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAY-02. REMARK 100 THE DEPOSITION ID IS D_1000016206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-96 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 6 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24342 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 26.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.11100 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: BACKBONE OF CYCLIN-DEPENDENT KINASE 2 (PDB ENTRY REMARK 200 1HCL) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, SODIUM ACETATE, TRIS/HCL, PH REMARK 280 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.27500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.72000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.27500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.72000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1226 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 6 REMARK 465 ARG A 334 REMARK 465 THR A 335 REMARK 465 ARG A 336 REMARK 465 ALA A 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N SER A 7 O HOH A 1222 2.11 REMARK 500 NZ LYS A 8 O HOH A 1120 2.14 REMARK 500 O HOH A 1127 O HOH A 1157 2.14 REMARK 500 NH2 ARG A 43 OE2 GLU A 55 2.15 REMARK 500 OE1 GLU A 230 O HOH A 1049 2.17 REMARK 500 OE2 GLU A 311 O HOH A 1223 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1074 O HOH A 1074 2555 1.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 14 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 38 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 120 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP A 130 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 47 148.03 -170.86 REMARK 500 LYS A 107 31.79 70.01 REMARK 500 GLU A 114 152.13 -49.28 REMARK 500 ASP A 156 46.24 -149.45 REMARK 500 ASP A 175 76.77 56.64 REMARK 500 ALA A 193 179.30 61.18 REMARK 500 ASP A 208 59.36 -90.78 REMARK 500 VAL A 293 59.08 -107.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEN A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LPU RELATED DB: PDB REMARK 900 1LPU CONTAINS THE CORRESPONDING LOW TEMPERATURE STRUCTURE (100 K) REMARK 900 RELATED ID: 1LP4 RELATED DB: PDB REMARK 900 1LP4 CONTAINS THE SAME PROTEIN COMPLEXED WITH MG-AMPPNP AT 1.86 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1DAW RELATED DB: PDB REMARK 900 1DAW CONTAINS THE SAME PROTEIN COMPLEXED WITH MG-AMPPNP AT 2.20 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1DAY RELATED DB: PDB REMARK 900 1DAY CONTAINS THE SAME PROTEIN COMPLEXED WITH MG-GMPPNP AT 2.20 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1JWH RELATED DB: PDB REMARK 900 1JWH CONTAINS THE HOMOLOGOUS PROTEIN FROM HOMO SAPIENS COMPLEXED REMARK 900 WITH A REGULATORY SUBUNIT(CK2 HOLOENZYME) REMARK 900 RELATED ID: 1QF8 RELATED DB: PDB REMARK 900 1QF8 CONTAINS A TRUNCATED FORM OF THE CORRESPONDING REGULATORY REMARK 900 SUBUNIT FROM HOMO SAPIENS (CK2 BETA) DBREF 1LR4 A 6 337 UNP P28523 CSK2A_MAIZE 1 332 SEQRES 1 A 332 MET SER LYS ALA ARG VAL TYR ALA ASP VAL ASN VAL LEU SEQRES 2 A 332 ARG PRO LYS GLU TYR TRP ASP TYR GLU ALA LEU THR VAL SEQRES 3 A 332 GLN TRP GLY GLU GLN ASP ASP TYR GLU VAL VAL ARG LYS SEQRES 4 A 332 VAL GLY ARG GLY LYS TYR SER GLU VAL PHE GLU GLY ILE SEQRES 5 A 332 ASN VAL ASN ASN ASN GLU LYS CYS ILE ILE LYS ILE LEU SEQRES 6 A 332 LYS PRO VAL LYS LYS LYS LYS ILE LYS ARG GLU ILE LYS SEQRES 7 A 332 ILE LEU GLN ASN LEU CYS GLY GLY PRO ASN ILE VAL LYS SEQRES 8 A 332 LEU LEU ASP ILE VAL ARG ASP GLN HIS SER LYS THR PRO SEQRES 9 A 332 SER LEU ILE PHE GLU TYR VAL ASN ASN THR ASP PHE LYS SEQRES 10 A 332 VAL LEU TYR PRO THR LEU THR ASP TYR ASP ILE ARG TYR SEQRES 11 A 332 TYR ILE TYR GLU LEU LEU LYS ALA LEU ASP TYR CYS HIS SEQRES 12 A 332 SER GLN GLY ILE MET HIS ARG ASP VAL LYS PRO HIS ASN SEQRES 13 A 332 VAL MET ILE ASP HIS GLU LEU ARG LYS LEU ARG LEU ILE SEQRES 14 A 332 ASP TRP GLY LEU ALA GLU PHE TYR HIS PRO GLY LYS GLU SEQRES 15 A 332 TYR ASN VAL ARG VAL ALA SER ARG TYR PHE LYS GLY PRO SEQRES 16 A 332 GLU LEU LEU VAL ASP LEU GLN ASP TYR ASP TYR SER LEU SEQRES 17 A 332 ASP MET TRP SER LEU GLY CYS MET PHE ALA GLY MET ILE SEQRES 18 A 332 PHE ARG LYS GLU PRO PHE PHE TYR GLY HIS ASP ASN HIS SEQRES 19 A 332 ASP GLN LEU VAL LYS ILE ALA LYS VAL LEU GLY THR ASP SEQRES 20 A 332 GLY LEU ASN VAL TYR LEU ASN LYS TYR ARG ILE GLU LEU SEQRES 21 A 332 ASP PRO GLN LEU GLU ALA LEU VAL GLY ARG HIS SER ARG SEQRES 22 A 332 LYS PRO TRP LEU LYS PHE MET ASN ALA ASP ASN GLN HIS SEQRES 23 A 332 LEU VAL SER PRO GLU ALA ILE ASP PHE LEU ASP LYS LEU SEQRES 24 A 332 LEU ARG TYR ASP HIS GLN GLU ARG LEU THR ALA LEU GLU SEQRES 25 A 332 ALA MET THR HIS PRO TYR PHE GLN GLN VAL ARG ALA ALA SEQRES 26 A 332 GLU ASN SER ARG THR ARG ALA HET BEN A1001 9 HETNAM BEN BENZAMIDINE FORMUL 2 BEN C7 H8 N2 FORMUL 3 HOH *225(H2 O) HELIX 1 1 ASP A 14 ARG A 19 1 6 HELIX 2 2 PRO A 20 ASP A 25 1 6 HELIX 3 3 TYR A 26 LEU A 29 5 4 HELIX 4 4 GLU A 35 ASP A 37 5 3 HELIX 5 5 LYS A 74 CYS A 89 1 16 HELIX 6 6 ASP A 120 TYR A 125 1 6 HELIX 7 7 PRO A 126 LEU A 128 5 3 HELIX 8 8 THR A 129 GLN A 150 1 22 HELIX 9 9 LYS A 158 HIS A 160 5 3 HELIX 10 10 SER A 194 LYS A 198 5 5 HELIX 11 11 GLY A 199 VAL A 204 1 6 HELIX 12 12 TYR A 211 ARG A 228 1 18 HELIX 13 13 ASP A 237 GLY A 250 1 14 HELIX 14 14 GLY A 250 TYR A 261 1 12 HELIX 15 15 ASP A 266 GLY A 274 1 9 HELIX 16 16 PRO A 280 MET A 285 5 6 HELIX 17 17 ASN A 289 VAL A 293 5 5 HELIX 18 18 SER A 294 LEU A 305 1 12 HELIX 19 19 ASP A 308 ARG A 312 5 5 HELIX 20 20 THR A 314 THR A 320 1 7 HELIX 21 21 HIS A 321 TYR A 323 5 3 HELIX 22 22 PHE A 324 ASN A 332 1 9 SHEET 1 A 5 TYR A 39 ARG A 47 0 SHEET 2 A 5 SER A 51 ASN A 58 -1 O GLU A 55 N ARG A 43 SHEET 3 A 5 GLU A 63 LEU A 70 -1 O ILE A 67 N PHE A 54 SHEET 4 A 5 PRO A 109 GLU A 114 -1 O PHE A 113 N ILE A 66 SHEET 5 A 5 LEU A 97 ARG A 102 -1 N VAL A 101 O SER A 110 SHEET 1 B 2 ILE A 152 MET A 153 0 SHEET 2 B 2 GLU A 180 PHE A 181 -1 O GLU A 180 N MET A 153 SHEET 1 C 2 VAL A 162 ASP A 165 0 SHEET 2 C 2 LYS A 170 LEU A 173 -1 O ARG A 172 N MET A 163 CISPEP 1 GLU A 230 PRO A 231 0 -1.95 SITE 1 AC1 8 ILE A 66 LYS A 68 PHE A 113 MET A 163 SITE 2 AC1 8 ILE A 174 ASP A 175 HOH A1016 HOH A1065 CRYST1 142.550 61.440 45.410 90.00 103.06 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007015 0.000000 0.001627 0.00000 SCALE2 0.000000 0.016276 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022606 0.00000