PDB Short entry for 1LRP HEADER DNA BINDING REGULATORY PROTEIN 04-DEC-87 1LRP TITLE COMPARISON OF THE STRUCTURES OF CRO AND LAMBDA REPRESSOR PROTEINS FROM TITLE 2 BACTERIOPHAGE LAMBDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAMBDA REPRESSOR; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA; SOURCE 3 ORGANISM_TAXID: 10710 KEYWDS DNA BINDING REGULATORY PROTEIN EXPDTA X-RAY DIFFRACTION MDLTYP CA ATOMS ONLY, CHAIN A, B, C AUTHOR C.PABO,M.LEWIS REVDAT 3 13-JUL-11 1LRP 1 VERSN REVDAT 2 24-FEB-09 1LRP 1 VERSN REVDAT 1 09-JAN-89 1LRP 0 JRNL AUTH D.H.OHLENDORF,W.F.ANDERSON,M.LEWIS,C.O.PABO,B.W.MATTHEWS JRNL TITL COMPARISON OF THE STRUCTURES OF CRO AND LAMBDA REPRESSOR JRNL TITL 2 PROTEINS FROM BACTERIOPHAGE LAMBDA. JRNL REF J.MOL.BIOL. V. 169 757 1983 JRNL REFN ISSN 0022-2836 JRNL PMID 6226802 JRNL DOI 10.1016/S0022-2836(83)80169-7 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.LEWIS,A.JEFFREY,J.WANG,R.LADNER,M.PTASHNE,C.O.PABO REMARK 1 TITL STRUCTURE OF THE OPERATOR-BINDING DOMAIN OF BACTERIOPHAGE REMARK 1 TITL 2 LAMBDA REPRESSOR. IMPLICATIONS FOR DNA RECOGNITION AND GENE REMARK 1 TITL 3 REGULATION REMARK 1 REF COLD SPRING HARBOR V. 47 435 1983 REMARK 1 REF 2 SYMP.QUANT.BIOL. REMARK 1 REFN ISSN 0091-7451 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.T.SAUER,R.R.YOCUM,R.F.DOOLITTLE,M.LEWIS,C.O.PABO REMARK 1 TITL HOMOLOGY AMONG DNA-BINDING PROTEINS SUGGESTS USE OF A REMARK 1 TITL 2 CONSERVED SUPER-SECONDARY STRUCTURE REMARK 1 REF NATURE V. 298 447 1982 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 3 REMARK 1 AUTH C.O.PABO,M.LEWIS REMARK 1 TITL THE OPERATOR-BINDING DOMAIN OF LAMBDA REPRESSOR. STRUCTURE REMARK 1 TITL 2 AND DNA RECOGNITION REMARK 1 REF NATURE V. 298 443 1982 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 4 REMARK 1 AUTH C.O.PABO,W.KROVATIN,A.JEFFREY,R.T.SAUER REMARK 1 TITL THE N-TERMINAL ARMS OF LAMBDA REPRESSOR WRAP AROUND THE REMARK 1 TITL 2 OPERATOR DNA REMARK 1 REF NATURE V. 298 441 1982 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 267 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LRP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 285 REMARK 285 THE ENTRY COORDINATES REMARK 285 ARE NOT PRESENTED IN THE STANDARD CRYSTAL FRAME. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.499746 0.802774 -0.324993 0.01759 REMARK 290 SMTRY2 2 -0.802894 -0.289335 0.521359 -37.40195 REMARK 290 SMTRY3 2 0.324492 0.521607 0.789081 -92.46891 REMARK 290 SMTRY1 3 -0.500254 -0.802972 0.324502 0.00880 REMARK 290 SMTRY2 3 0.802726 -0.288883 0.521482 -18.70098 REMARK 290 SMTRY3 3 -0.324908 0.521165 0.789137 -46.23445 REMARK 290 SMTRY1 4 1.000000 0.000780 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000217 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000235 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 -0.500351 0.802582 -0.324535 0.00880 REMARK 290 SMTRY2 5 0.802786 0.289509 -0.521430 -18.70098 REMARK 290 SMTRY3 5 -0.324610 -0.521418 -0.789158 -46.23445 REMARK 290 SMTRY1 6 -0.499649 -0.803164 0.324960 0.01759 REMARK 290 SMTRY2 6 -0.802834 0.288709 -0.521412 -37.40195 REMARK 290 SMTRY3 6 0.324791 -0.521354 -0.789060 -92.46891 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE REPRESSOR MOLECULE CONSISTS OF A DIMER, AND COORDINATES REMARK 300 FOR THE SYMMETRY RELATED CHAIN CAN BE GENERATED FROM THE REMARK 300 CHAIN PRESENTED IN THIS ENTRY BY REMARK 300 1.0 0.0 0.0 0.0 REMARK 300 0.0 -1.0 0.0 0.0 REMARK 300 0.0 0.0 -1.0 0.0 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000780 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000217 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000235 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 SER B 1 REMARK 465 THR B 2 REMARK 465 LYS B 3 REMARK 465 SER C 1 REMARK 465 THR C 2 REMARK 465 LYS C 3 DBREF 1LRP A 1 92 UNP P03034 RPC1_LAMBD 1 92 DBREF 1LRP B 1 92 UNP P03034 RPC1_LAMBD 1 92 DBREF 1LRP C 1 92 UNP P03034 RPC1_LAMBD 1 92 SEQRES 1 A 92 SER THR LYS LYS LYS PRO LEU THR GLN GLU GLN LEU GLU SEQRES 2 A 92 ASP ALA ARG ARG LEU LYS ALA ILE TYR GLU LYS LYS LYS SEQRES 3 A 92 ASN GLU LEU GLY LEU SER GLN GLU SER VAL ALA ASP LYS SEQRES 4 A 92 MET GLY MET GLY GLN SER GLY VAL GLY ALA LEU PHE ASN SEQRES 5 A 92 GLY ILE ASN ALA LEU ASN ALA TYR ASN ALA ALA LEU LEU SEQRES 6 A 92 ALA LYS ILE LEU LYS VAL SER VAL GLU GLU PHE SER PRO SEQRES 7 A 92 SER ILE ALA ARG GLU ILE TYR GLU MET TYR GLU ALA VAL SEQRES 8 A 92 SER SEQRES 1 B 92 SER THR LYS LYS LYS PRO LEU THR GLN GLU GLN LEU GLU SEQRES 2 B 92 ASP ALA ARG ARG LEU LYS ALA ILE TYR GLU LYS LYS LYS SEQRES 3 B 92 ASN GLU LEU GLY LEU SER GLN GLU SER VAL ALA ASP LYS SEQRES 4 B 92 MET GLY MET GLY GLN SER GLY VAL GLY ALA LEU PHE ASN SEQRES 5 B 92 GLY ILE ASN ALA LEU ASN ALA TYR ASN ALA ALA LEU LEU SEQRES 6 B 92 ALA LYS ILE LEU LYS VAL SER VAL GLU GLU PHE SER PRO SEQRES 7 B 92 SER ILE ALA ARG GLU ILE TYR GLU MET TYR GLU ALA VAL SEQRES 8 B 92 SER SEQRES 1 C 92 SER THR LYS LYS LYS PRO LEU THR GLN GLU GLN LEU GLU SEQRES 2 C 92 ASP ALA ARG ARG LEU LYS ALA ILE TYR GLU LYS LYS LYS SEQRES 3 C 92 ASN GLU LEU GLY LEU SER GLN GLU SER VAL ALA ASP LYS SEQRES 4 C 92 MET GLY MET GLY GLN SER GLY VAL GLY ALA LEU PHE ASN SEQRES 5 C 92 GLY ILE ASN ALA LEU ASN ALA TYR ASN ALA ALA LEU LEU SEQRES 6 C 92 ALA LYS ILE LEU LYS VAL SER VAL GLU GLU PHE SER PRO SEQRES 7 C 92 SER ILE ALA ARG GLU ILE TYR GLU MET TYR GLU ALA VAL SEQRES 8 C 92 SER HELIX 1 H1 GLN A 9 GLU A 23 1 15 HELIX 2 H2 GLN A 33 LYS A 39 1 7 HELIX 3 H3 GLN A 44 ASN A 52 1 9 HELIX 4 H4 ASN A 61 LEU A 69 1 9 HELIX 5 H5 SER A 79 SER A 92 1 14 HELIX 6 H6 GLN B 9 GLU B 23 1 15 HELIX 7 H7 GLN B 33 LYS B 39 1 7 HELIX 8 H8 GLN B 44 ASN B 52 1 9 HELIX 9 H8 ASN B 61 LEU B 69 1 9 HELIX 10 H10 SER B 79 SER B 92 1 14 HELIX 11 H11 GLN C 9 GLU C 23 1 15 HELIX 12 H12 GLN C 33 LYS C 39 1 7 HELIX 13 H13 GLN C 44 ASN C 52 1 9 HELIX 14 H14 ASN C 61 LEU C 69 1 9 HELIX 15 H15 SER C 79 SER C 92 1 14 CRYST1 65.000 65.000 149.600 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 -0.015383 -0.008240 0.003330 -0.71011 SCALE2 -0.015384 0.008228 -0.003331 -0.71005 SCALE3 0.000001 -0.002506 -0.006196 -0.00002 MTRIX1 1 -0.496275 -0.830170 0.254270 13.15542 1 MTRIX2 1 0.774128 -0.290628 0.562424 28.28864 1 MTRIX3 1 -0.392908 0.475870 0.786930 -10.70246 1 MTRIX1 2 -0.496343 0.774198 -0.392954 -19.57638 1 MTRIX2 2 -0.830070 -0.290663 0.475974 24.23215 1 MTRIX3 2 0.254303 0.562164 0.786930 -10.82593 1