PDB Short entry for 1LTH HEADER OXIDOREDUCTASE 04-JAN-95 1LTH TITLE T AND R STATES IN THE CRYSTALS OF BACTERIAL L-LACTATE DEHYDROGENASE TITLE 2 REVEAL THE MECHANISM FOR ALLOSTERIC CONTROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-LACTATE DEHYDROGENASE (T- AND R- STATE TETRAMER COMPLEX); COMPND 3 CHAIN: T, R; COMPND 4 EC: 1.1.1.27; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BIFIDOBACTERIUM LONGUM SUBSP. LONGUM; SOURCE 3 ORGANISM_TAXID: 1679; SOURCE 4 STRAIN: SUBSP. LONGUM; SOURCE 5 GENE: BIFIDOBACTERIUM LONGUM LDH GENE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACTERIAL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PUBM9 (A DERIVATIVE OF PUC119) KEYWDS OXIDOREDUCTASE, CHOH(D)-NAD(A), ALLOSTERIC ENZYME EXPDTA X-RAY DIFFRACTION AUTHOR S.IWATA,T.OHTA REVDAT 7 14-FEB-24 1LTH 1 HETSYN REVDAT 6 29-JUL-20 1LTH 1 COMPND REMARK SEQADV HETNAM REVDAT 6 2 1 SITE REVDAT 5 26-FEB-14 1LTH 1 REMARK REVDAT 4 13-JUL-11 1LTH 1 VERSN REVDAT 3 24-FEB-09 1LTH 1 VERSN REVDAT 2 01-APR-03 1LTH 1 JRNL REVDAT 1 31-MAR-95 1LTH 0 JRNL AUTH S.IWATA,K.KAMATA,S.YOSHIDA,T.MINOWA,T.OHTA JRNL TITL T AND R STATES IN THE CRYSTALS OF BACTERIAL L-LACTATE JRNL TITL 2 DEHYDROGENASE REVEAL THE MECHANISM FOR ALLOSTERIC CONTROL. JRNL REF NAT.STRUCT.BIOL. V. 1 176 1994 JRNL REFN ISSN 1072-8368 JRNL PMID 7656036 JRNL DOI 10.1038/NSB0394-176 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.IWATA,S.YOSHIDA,T.OHTA REMARK 1 TITL A REGULAR 1:1 COMPLEX OF TWO ALLOSTERIC STATES IN THE SINGLE REMARK 1 TITL 2 CRYSTAL OF L-LACTATE DEHYDROGENASE FROM BIFIDOBACTERIUM REMARK 1 TITL 3 LONGUM REMARK 1 REF J.MOL.BIOL. V. 236 958 1994 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.IWATA,T.OHTA REMARK 1 TITL MOLECULAR BASIS OF ALLOSTERIC ACTIVATION OF BACTERIAL REMARK 1 TITL 2 L-LACTATE DEHYDROGENASE REMARK 1 REF J.MOL.BIOL. V. 230 21 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH T.OHTA,T.MINOWA,K.YOKOTA,S.IWATA REMARK 1 TITL MECHANISM OF ALLOSTERIC TRANSITION OF BACTERIAL L-LACTATE REMARK 1 TITL 2 DEHYDROGENASE REMARK 1 REF FARADAY DISC.CHEM.SOC V. 93 153 1992 REMARK 1 REFN ISSN 1359-6640 REMARK 1 REFERENCE 4 REMARK 1 AUTH S.IWATA,T.MINOWA,B.MIKANI,Y.MORITA,T.OHTA REMARK 1 TITL CRYSTALLIZATION OF AND PRELIMINARY CRYSTALLOGRAPHIC DATA FOR REMARK 1 TITL 2 ALLOSTERIC L-LACTATE DEHYDROGENASE FROM BIFIDOBACTERIUM REMARK 1 TITL 3 LONGUM REMARK 1 REF J.BIOCHEM.(TOKYO) V. 106 558 1989 REMARK 1 REFN ISSN 0021-924X REMARK 1 REFERENCE 5 REMARK 1 AUTH T.MINOWA,S.IWATA,H.SAKAI,H.MASAKI,T.OHTA REMARK 1 TITL SEQUENCE AND CHARACTERISTICS OF THE BIFIDOBACTERIUM LONGUM REMARK 1 TITL 2 GENE ENCODING L-LACTATE DEHYDROGENASE AND THE PRIMARY REMARK 1 TITL 3 STRUCTURE OF THE ENZYME: A NEW FEATURE OF THE ALLOSTERIC REMARK 1 TITL 4 SITE REMARK 1 REF GENE V. 85 161 1989 REMARK 1 REFN ISSN 0378-1119 REMARK 1 REFERENCE 6 REMARK 1 AUTH S.IWATA,T.MINOWA,H.SAKAI,T.OHTA REMARK 1 TITL AMINO ACID RESIDUES IN THE ALLOSTERIC SITE OF L-LACTATE REMARK 1 TITL 2 DEHYDROGENASE FROM BIFIDOBACTERIUM LONGUM REMARK 1 REF AGRIC.BIOL.CHEM. V. 53 3365 1989 REMARK 1 REFN ISSN 0002-1369 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 2.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 79.2 REMARK 3 NUMBER OF REFLECTIONS : 21245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4700 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 134 REMARK 3 SOLVENT ATOMS : 301 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.631 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.59 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.598 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LTH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174832. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24341 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 2.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 147.95000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.50000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 147.95000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.50000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 147.95000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 35.50000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 147.95000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 35.50000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 74.20000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 35.50000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 74.20000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 35.50000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 74.20000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 35.50000 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 74.20000 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.50000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 74.20000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 147.95000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 74.20000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 147.95000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 74.20000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 147.95000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 74.20000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 147.95000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS CRYSTAL STRUCTURE REFERENCES THE REGULAR 1:1 COMPLEX REMARK 300 OF T-STATE (LOW AFFINITY TO SUBSTRATE) AND R-STATE (HIGH REMARK 300 AFFINITY TO SUBSTRATE) TETRAMERS OF L-LACTATE DEHYDROGENASE REMARK 300 FROM BIFIDOBACTERIUM LONGUM. THE CRYSTALLOGRAPHIC REMARK 300 ASYMMETRIC UNIT CONTAINS ONE T-STATE SUBUNIT AND ONE REMARK 300 R-STATE SUBUNIT ASSIGNED CHAIN IDENTIFIERS "T" AND "R", REMARK 300 RESPECTIVELY. REMARK 300 REMARK 300 SYMMETRY REMARK 300 THE CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS PRESENTED REMARK 300 BELOW GENERATE THE SUBUNITS OF THE POLYMERIC MOLECULE. REMARK 300 REMARK 300 APPLIED TO RESIDUES: T 6 .. T 321 REMARK 300 REMARK 300 FORMATION OF THE P-AXIS RELATED SUBUNIT OF THE T-STATE REMARK 300 TETRAMER REMARK 300 SYMMETRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 300 SYMMETRY2 1 0.000000 -1.000000 0.000000 0.00000 REMARK 300 SYMMETRY3 1 0.000000 0.000000 -1.000000 0.00000 REMARK 300 APPLIED TO RESIDUES: T 6 .. T 321 REMARK 300 REMARK 300 FORMATION OF THE Q-AXIS RELATED SUBUNIT OF THE T-STATE REMARK 300 TETRAMER REMARK 300 SYMMETRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 300 SYMMETRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 300 SYMMETRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 300 APPLIED TO RESIDUES: T 6 .. T 321 REMARK 300 REMARK 300 FORMATION OF THE R-AXIS RELATED SUBUNIT OF THE T-STATE REMARK 300 TETRAMER REMARK 300 SYMMETRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 300 SYMMETRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 300 SYMMETRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 300 APPLIED TO RESIDUES: R 6 .. R 322 REMARK 300 REMARK 300 FORMATION OF THE P-AXIS RELATED SUBUNIT OF THE R-STATE REMARK 300 TETRAMER REMARK 300 SYMMETRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 300 SYMMETRY2 4 0.000000 -1.000000 0.000000 147.92900 REMARK 300 SYMMETRY3 4 0.000000 0.000000 -1.000000 35.46099 REMARK 300 APPLIED TO RESIDUES: R 6 .. R 322 REMARK 300 REMARK 300 FORMATION OF THE Q-AXIS RELATED SUBUNIT OF THE R-STATE REMARK 300 TETRAMER REMARK 300 SYMMETRY1 5 -1.000000 0.000000 0.000000 74.18398 REMARK 300 SYMMETRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 300 SYMMETRY3 5 0.000000 0.000000 -1.000000 35.46099 REMARK 300 APPLIED TO RESIDUES: R 6 .. R 322 REMARK 300 REMARK 300 FORMATION OF THE R-AXIS RELATED SUBUNIT OF THE R-STATE REMARK 300 TETRAMER REMARK 300 SYMMETRY1 6 -1.000000 0.000000 0.000000 74.18398 REMARK 300 SYMMETRY2 6 0.000000 -1.000000 0.000000 147.92900 REMARK 300 SYMMETRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 18930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 21310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 147.95000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 35.50000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 74.20000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 35.50000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 74.20000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 147.95000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE T-STATE TETRAMERS, THAT BIND NADH AND FBP, ARE CENTERED REMARK 400 AT THE ORIGIN AND ITS EQUIVALENTS. THE R-STATE TETRAMERS, REMARK 400 THAT BIND NADH, OXAMATE AND FBP, ARE CENTERED AT (1/4, 1/4, REMARK 400 1/4) AND ITS EQUIVALENTS. THE MOLECULAR DYADS OF THESE REMARK 400 TETRAMERS LIE ON THE CRYSTALLOGRAPHIC TWO-FOLD AXES. REMARK 400 REMARK 400 THIS ENZYME IS A MUTANT WITH CYS 199 REPLACED BY SER. REMARK 400 KINETIC PROPERTIES OF THE ENZYME ARE IDENTICAL WITH THOSE REMARK 400 OF WILD-TYPE ENZYME. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA T 1 REMARK 465 GLU T 2 REMARK 465 THR T 3 REMARK 465 THR T 4 REMARK 465 VAL T 5 REMARK 465 LYS T 6 REMARK 465 ALA R 1 REMARK 465 GLU R 2 REMARK 465 THR R 3 REMARK 465 THR R 4 REMARK 465 VAL R 5 REMARK 465 LYS R 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU R 259 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA T 15 36.83 -98.53 REMARK 500 TYR T 59 57.47 -160.24 REMARK 500 MET T 108 -72.94 -52.25 REMARK 500 GLN T 135 -70.98 -52.83 REMARK 500 PRO T 141 137.30 -35.62 REMARK 500 LEU T 187 47.89 -78.04 REMARK 500 TRP T 188 -32.15 -39.54 REMARK 500 PRO T 203 88.93 -52.05 REMARK 500 PRO T 205 120.41 -24.16 REMARK 500 LYS T 233 93.56 -58.68 REMARK 500 ASP T 267 88.35 178.83 REMARK 500 ASN T 283 -171.21 -176.54 REMARK 500 THR T 290 31.83 -90.89 REMARK 500 GLN T 316 -8.02 -57.58 REMARK 500 ARG R 74 109.70 -55.95 REMARK 500 ASP R 75 -2.97 78.48 REMARK 500 ALA R 83 120.99 -39.61 REMARK 500 ARG R 93 -18.33 -44.77 REMARK 500 LEU R 111 -71.31 -63.04 REMARK 500 THR R 124 138.62 -29.50 REMARK 500 PRO R 141 150.44 -49.58 REMARK 500 GLU R 142 20.89 -57.39 REMARK 500 PHE R 146 -158.32 -106.46 REMARK 500 SER R 148 4.27 -54.25 REMARK 500 LYS R 233 13.07 -152.35 REMARK 500 ASN R 237 -28.03 -154.91 REMARK 500 VAL R 261 -169.43 -126.42 REMARK 500 ILE R 271 88.68 -65.94 REMARK 500 PRO R 279 91.19 -54.88 REMARK 500 VAL R 287 98.48 -68.22 REMARK 500 PRO R 294 100.82 -52.16 REMARK 500 GLN R 316 10.22 -60.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: TND REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: NADH BINDING SITE IN THE T CHAIN REMARK 800 REMARK 800 SITE_IDENTIFIER: RND REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: NADH BINDING SITE IN THE R CHAIN REMARK 800 REMARK 800 SITE_IDENTIFIER: TFB REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: FBP BINDING SITE IN THE T CHAIN REMARK 800 REMARK 800 SITE_IDENTIFIER: RFB REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: FBP BINDING SITE IN THE R CHAIN REMARK 800 REMARK 800 SITE_IDENTIFIER: ROX REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: OXAMATE BINDING SITE IN THE R CHAIN DBREF 1LTH T 1 319 UNP P19869 LDH2_BIFLO 1 319 DBREF 1LTH R 1 319 UNP P19869 LDH2_BIFLO 1 319 SEQADV 1LTH SER T 199 UNP P19869 CYS 199 CONFLICT SEQADV 1LTH SER R 199 UNP P19869 CYS 199 CONFLICT SEQRES 1 T 319 ALA GLU THR THR VAL LYS PRO THR LYS LEU ALA VAL ILE SEQRES 2 T 319 GLY ALA GLY ALA VAL GLY SER THR LEU ALA PHE ALA ALA SEQRES 3 T 319 ALA GLN ARG GLY ILE ALA ARG GLU ILE VAL LEU GLU ASP SEQRES 4 T 319 ILE ALA LYS GLU ARG VAL GLU ALA GLU VAL LEU ASP MET SEQRES 5 T 319 GLN HIS GLY SER SER PHE TYR PRO THR VAL SER ILE ASP SEQRES 6 T 319 GLY SER ASP ASP PRO GLU ILE CYS ARG ASP ALA ASP MET SEQRES 7 T 319 VAL VAL ILE THR ALA GLY PRO ARG GLN LYS PRO GLY GLN SEQRES 8 T 319 SER ARG LEU GLU LEU VAL GLY ALA THR VAL ASN ILE LEU SEQRES 9 T 319 LYS ALA ILE MET PRO ASN LEU VAL LYS VAL ALA PRO ASN SEQRES 10 T 319 ALA ILE TYR MET LEU ILE THR ASN PRO VAL ASP ILE ALA SEQRES 11 T 319 THR HIS VAL ALA GLN LYS LEU THR GLY LEU PRO GLU ASN SEQRES 12 T 319 GLN ILE PHE GLY SER GLY THR ASN LEU ASP SER ALA ARG SEQRES 13 T 319 LEU ARG PHE LEU ILE ALA GLN GLN THR GLY VAL ASN VAL SEQRES 14 T 319 LYS ASN VAL HIS ALA TYR ILE ALA GLY GLU HIS GLY ASP SEQRES 15 T 319 SER GLU VAL PRO LEU TRP GLU SER ALA THR ILE GLY GLY SEQRES 16 T 319 VAL PRO MET SER ASP TRP THR PRO LEU PRO GLY HIS ASP SEQRES 17 T 319 PRO LEU ASP ALA ASP LYS ARG GLU GLU ILE HIS GLN GLU SEQRES 18 T 319 VAL LYS ASN ALA ALA TYR LYS ILE ILE ASN GLY LYS GLY SEQRES 19 T 319 ALA THR ASN TYR ALA ILE GLY MET SER GLY VAL ASP ILE SEQRES 20 T 319 ILE GLU ALA VAL LEU HIS ASP THR ASN ARG ILE LEU PRO SEQRES 21 T 319 VAL SER SER MET LEU LYS ASP PHE HIS GLY ILE SER ASP SEQRES 22 T 319 ILE CYS MET SER VAL PRO THR LEU LEU ASN ARG GLN GLY SEQRES 23 T 319 VAL ASN ASN THR ILE ASN THR PRO VAL SER ASP LYS GLU SEQRES 24 T 319 LEU ALA ALA LEU LYS ARG SER ALA GLU THR LEU LYS GLU SEQRES 25 T 319 THR ALA ALA GLN PHE GLY PHE SEQRES 1 R 319 ALA GLU THR THR VAL LYS PRO THR LYS LEU ALA VAL ILE SEQRES 2 R 319 GLY ALA GLY ALA VAL GLY SER THR LEU ALA PHE ALA ALA SEQRES 3 R 319 ALA GLN ARG GLY ILE ALA ARG GLU ILE VAL LEU GLU ASP SEQRES 4 R 319 ILE ALA LYS GLU ARG VAL GLU ALA GLU VAL LEU ASP MET SEQRES 5 R 319 GLN HIS GLY SER SER PHE TYR PRO THR VAL SER ILE ASP SEQRES 6 R 319 GLY SER ASP ASP PRO GLU ILE CYS ARG ASP ALA ASP MET SEQRES 7 R 319 VAL VAL ILE THR ALA GLY PRO ARG GLN LYS PRO GLY GLN SEQRES 8 R 319 SER ARG LEU GLU LEU VAL GLY ALA THR VAL ASN ILE LEU SEQRES 9 R 319 LYS ALA ILE MET PRO ASN LEU VAL LYS VAL ALA PRO ASN SEQRES 10 R 319 ALA ILE TYR MET LEU ILE THR ASN PRO VAL ASP ILE ALA SEQRES 11 R 319 THR HIS VAL ALA GLN LYS LEU THR GLY LEU PRO GLU ASN SEQRES 12 R 319 GLN ILE PHE GLY SER GLY THR ASN LEU ASP SER ALA ARG SEQRES 13 R 319 LEU ARG PHE LEU ILE ALA GLN GLN THR GLY VAL ASN VAL SEQRES 14 R 319 LYS ASN VAL HIS ALA TYR ILE ALA GLY GLU HIS GLY ASP SEQRES 15 R 319 SER GLU VAL PRO LEU TRP GLU SER ALA THR ILE GLY GLY SEQRES 16 R 319 VAL PRO MET SER ASP TRP THR PRO LEU PRO GLY HIS ASP SEQRES 17 R 319 PRO LEU ASP ALA ASP LYS ARG GLU GLU ILE HIS GLN GLU SEQRES 18 R 319 VAL LYS ASN ALA ALA TYR LYS ILE ILE ASN GLY LYS GLY SEQRES 19 R 319 ALA THR ASN TYR ALA ILE GLY MET SER GLY VAL ASP ILE SEQRES 20 R 319 ILE GLU ALA VAL LEU HIS ASP THR ASN ARG ILE LEU PRO SEQRES 21 R 319 VAL SER SER MET LEU LYS ASP PHE HIS GLY ILE SER ASP SEQRES 22 R 319 ILE CYS MET SER VAL PRO THR LEU LEU ASN ARG GLN GLY SEQRES 23 R 319 VAL ASN ASN THR ILE ASN THR PRO VAL SER ASP LYS GLU SEQRES 24 R 319 LEU ALA ALA LEU LYS ARG SER ALA GLU THR LEU LYS GLU SEQRES 25 R 319 THR ALA ALA GLN PHE GLY PHE HET FBP T 320 20 HET NAD T 321 44 HET FBP R 320 20 HET NAD R 321 44 HET OXM R 322 6 HETNAM FBP 1,6-DI-O-PHOSPHONO-BETA-D-FRUCTOFURANOSE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM OXM OXAMIC ACID HETSYN FBP BETA-FRUCTOSE-1,6-DIPHOSPHATE; FRUCTOSE-1,6- HETSYN 2 FBP BISPHOSPHATE; 1,6-DI-O-PHOSPHONO-BETA-D-FRUCTOSE; 1,6- HETSYN 3 FBP DI-O-PHOSPHONO-D-FRUCTOSE; 1,6-DI-O-PHOSPHONO-FRUCTOSE FORMUL 3 FBP 2(C6 H14 O12 P2) FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 7 OXM C2 H3 N O3 FORMUL 8 HOH *301(H2 O) HELIX 1 1 ALA T 17 GLN T 28 1 12 HELIX 2 2 LYS T 42 PHE T 58 1 17 HELIX 3 3 PRO T 70 CYS T 73 5 4 HELIX 4 4 ARG T 93 VAL T 114 1 22 HELIX 5 5 VAL T 127 THR T 138 1 12 HELIX 6 6 GLU T 142 GLN T 144 5 3 HELIX 7 7 ASN T 151 THR T 165 1 15 HELIX 8 8 VAL T 169 ASN T 171 5 3 HELIX 9 9 TRP T 188 SER T 190 5 3 HELIX 10 10 MET T 198 ASP T 200 5 3 HELIX 11 11 ALA T 212 ASN T 231 1 20 HELIX 12 12 TYR T 238 LEU T 252 1 15 HELIX 13 13 ASP T 297 PHE T 317 1 21 HELIX 14 14 ALA R 17 ARG R 29 1 13 HELIX 15 15 LYS R 42 PHE R 58 1 17 HELIX 16 16 PRO R 70 CYS R 73 5 4 HELIX 17 17 ARG R 93 VAL R 114 5 22 HELIX 18 18 VAL R 127 THR R 138 1 12 HELIX 19 19 ASN R 151 THR R 165 1 15 HELIX 20 20 VAL R 169 ASN R 171 5 3 HELIX 21 21 TRP R 188 SER R 190 5 3 HELIX 22 22 MET R 198 ASP R 200 5 3 HELIX 23 23 ALA R 212 LYS R 233 1 22 HELIX 24 24 TYR R 238 LEU R 252 1 15 HELIX 25 25 ASP R 297 PHE R 317 1 21 SHEET 1 A 6 ILE T 145 GLY T 147 0 SHEET 2 A 6 ILE T 119 LEU T 122 1 N TYR T 120 O PHE T 146 SHEET 3 A 6 MET T 78 ILE T 81 1 N VAL T 79 O ILE T 119 SHEET 4 A 6 LYS T 9 ILE T 13 1 N ALA T 11 O MET T 78 SHEET 5 A 6 GLU T 34 GLU T 38 1 N GLU T 34 O LEU T 10 SHEET 6 A 6 SER T 63 SER T 67 1 N SER T 63 O ILE T 35 SHEET 1 B 3 ILE T 258 LEU T 265 0 SHEET 2 B 3 ILE T 274 ASN T 283 -1 N THR T 280 O LEU T 259 SHEET 3 B 3 GLY T 286 ASN T 288 -1 N ASN T 288 O LEU T 281 SHEET 1 C 6 ILE R 145 GLY R 147 0 SHEET 2 C 6 ILE R 119 LEU R 122 1 N TYR R 120 O PHE R 146 SHEET 3 C 6 MET R 78 ILE R 81 1 N VAL R 79 O ILE R 119 SHEET 4 C 6 LYS R 9 ILE R 13 1 N ALA R 11 O MET R 78 SHEET 5 C 6 GLU R 34 GLU R 38 1 N GLU R 34 O LEU R 10 SHEET 6 C 6 SER R 63 SER R 67 1 N SER R 63 O ILE R 35 SHEET 1 D 3 ARG R 257 LEU R 265 0 SHEET 2 D 3 ILE R 274 ASN R 283 -1 N LEU R 282 O ARG R 257 SHEET 3 D 3 GLY R 286 THR R 290 -1 N ASN R 289 O LEU R 281 CISPEP 1 ASN T 125 PRO T 126 0 10.72 CISPEP 2 ASN R 125 PRO R 126 0 -16.75 SITE 1 TND 20 ILE T 13 GLY T 16 ALA T 17 VAL T 18 SITE 2 TND 20 ASP T 39 ILE T 40 ARG T 44 THR T 82 SITE 3 TND 20 ALA T 83 GLY T 84 ARG T 86 ILE T 103 SITE 4 TND 20 ILE T 107 ILE T 123 THR T 124 ASN T 125 SITE 5 TND 20 HIS T 180 ILE T 230 ASN T 237 ILE T 240 SITE 1 RND 18 ILE R 13 GLY R 16 ALA R 17 VAL R 18 SITE 2 RND 18 ASP R 39 ILE R 40 THR R 82 ALA R 83 SITE 3 RND 18 GLY R 84 PRO R 85 ARG R 86 ILE R 103 SITE 4 RND 18 ILE R 107 ILE R 123 THR R 124 ASN R 125 SITE 5 RND 18 HIS R 180 ILE R 240 SITE 1 TFB 5 ARG T 158 LYS T 170 ASN T 171 HIS T 173 SITE 2 TFB 5 TYR T 175 SITE 1 RFB 5 ARG R 158 LYS R 170 ASN R 171 HIS R 173 SITE 2 RFB 5 TYR R 175 SITE 1 ROX 8 GLN R 87 ARG R 93 ASN R 125 LEU R 152 SITE 2 ROX 8 ARG R 156 HIS R 180 ALA R 226 THR R 236 CRYST1 148.400 295.900 71.000 90.00 90.00 90.00 F 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006739 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014085 0.00000