PDB Short entry for 1LZ9 HEADER HYDROLASE 15-MAR-99 1LZ9 TITLE ANOMALOUS SIGNAL OF SOLVENT BROMINES USED FOR PHASING OF LYSOZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (LYSOZYME); COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.17; COMPND 5 OTHER_DETAILS: BROMIDE AND SODIUM IONS PRESENT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 CELL: EGG; SOURCE 6 CELLULAR_LOCATION: CYTOPLASM (WHITE) KEYWDS LYSOZYME, SOLVENT BROMIDES, ANOMALOUS DISPERSION, SINGLE WAVELENGTH, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.DAUTER,M.DAUTER REVDAT 5 27-DEC-23 1LZ9 1 REMARK LINK REVDAT 4 01-DEC-09 1LZ9 1 REMARK REVDAT 3 24-FEB-09 1LZ9 1 VERSN REVDAT 2 02-AUG-05 1LZ9 1 DBREF REMARK REVDAT 1 26-MAY-99 1LZ9 0 JRNL AUTH Z.DAUTER,M.DAUTER JRNL TITL ANOMALOUS SIGNAL OF SOLVENT BROMIDES USED FOR PHASING OF JRNL TITL 2 LYSOZYME. JRNL REF J.MOL.BIOL. V. 289 93 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10339408 JRNL DOI 10.1006/JMBI.1999.2744 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 13309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM 10 % REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1318 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.64400 REMARK 3 B22 (A**2) : 0.64400 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.700 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.032 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.053 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.053 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.021 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.264 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.178 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.299 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.254 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 6.600 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 14.900; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 17.600; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.110 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.690 ; 5.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.710 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.860 ; 8.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LZ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-99. REMARK 100 THE DEPOSITION ID IS D_1000000652. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : MAY-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9188, 0.9195, 0.9198, 0.9201 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13429 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : 0.03500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 50.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.18200 REMARK 200 R SYM FOR SHELL (I) : 0.18200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 10.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 8LYZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZED IN HANGING DROPS. 15 REMARK 280 MG/ML PROTEIN SOLUTION IN 100 MM SODIUM ACETATE PH 4.6 AND 1 M REMARK 280 SODIUM BROMIDE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.60000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.30000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.90000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.30000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.30000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.30000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.30000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.90000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.30000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.30000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.30000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 125 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 37 O HOH A 331 1.69 REMARK 500 O HOH A 303 O HOH A 361 2.09 REMARK 500 O HOH A 303 O HOH A 332 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 295 O HOH A 295 7557 1.52 REMARK 500 O HOH A 260 O HOH A 260 8555 1.55 REMARK 500 O HOH A 256 O HOH A 349 3554 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 23 CE1 TYR A 23 CZ -0.095 REMARK 500 ASN A 37 CG ASN A 37 ND2 1.695 REMARK 500 CYS A 76 CB CYS A 76 SG 0.131 REMARK 500 ARG A 114 CZ ARG A 114 NH1 0.082 REMARK 500 ARG A 125 CB ARG A 125 CG 0.257 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 5 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 14 CB - CG - CD ANGL. DEV. = 16.8 DEGREES REMARK 500 ARG A 14 CD - NE - CZ ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG A 14 NH1 - CZ - NH2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 18 CA - CB - CG ANGL. DEV. = 18.3 DEGREES REMARK 500 TYR A 20 CB - CG - CD2 ANGL. DEV. = 4.3 DEGREES REMARK 500 TYR A 20 CB - CG - CD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 TYR A 20 CG - CD1 - CE1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 21 NH1 - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TYR A 23 CB - CG - CD1 ANGL. DEV. = -5.2 DEGREES REMARK 500 TYR A 23 CG - CD2 - CE2 ANGL. DEV. = -6.8 DEGREES REMARK 500 LEU A 25 CA - C - N ANGL. DEV. = 12.1 DEGREES REMARK 500 GLU A 35 OE1 - CD - OE2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ASN A 37 N - CA - CB ANGL. DEV. = 11.8 DEGREES REMARK 500 ASN A 37 OD1 - CG - ND2 ANGL. DEV. = -24.1 DEGREES REMARK 500 ASN A 37 CB - CG - ND2 ANGL. DEV. = 25.8 DEGREES REMARK 500 THR A 40 CA - CB - CG2 ANGL. DEV. = -9.4 DEGREES REMARK 500 ARG A 45 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 48 OD1 - CG - OD2 ANGL. DEV. = -12.3 DEGREES REMARK 500 ASP A 48 CB - CG - OD2 ANGL. DEV. = 11.4 DEGREES REMARK 500 ASP A 52 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 TYR A 53 CE1 - CZ - CE2 ANGL. DEV. = 10.0 DEGREES REMARK 500 TYR A 53 CZ - CE2 - CD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 68 NE - CZ - NH1 ANGL. DEV. = -11.2 DEGREES REMARK 500 ARG A 68 NE - CZ - NH2 ANGL. DEV. = 8.4 DEGREES REMARK 500 CYS A 76 CA - CB - SG ANGL. DEV. = -12.3 DEGREES REMARK 500 ASP A 87 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASN A 93 O - C - N ANGL. DEV. = 10.1 DEGREES REMARK 500 LYS A 97 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 ASP A 101 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 GLY A 102 O - C - N ANGL. DEV. = 10.7 DEGREES REMARK 500 ASN A 103 O - C - N ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG A 112 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 112 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 114 NE - CZ - NH2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 32 10.41 REMARK 500 SER A 50 -11.64 REMARK 500 ALA A 90 -14.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 209 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 60 O REMARK 620 2 CYS A 64 O 87.6 REMARK 620 3 SER A 72 OG 86.7 168.2 REMARK 620 4 ARG A 73 O 90.2 93.0 97.3 REMARK 620 5 HOH A 213 O 99.2 89.6 81.1 170.4 REMARK 620 6 HOH A 226 O 171.1 100.8 84.5 92.4 78.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 209 DBREF 1LZ9 A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET BR A 201 1 HET BR A 202 1 HET BR A 203 1 HET BR A 204 1 HET BR A 205 1 HET BR A 206 1 HET NA A 209 1 HETNAM BR BROMIDE ION HETNAM NA SODIUM ION FORMUL 2 BR 6(BR 1-) FORMUL 8 NA NA 1+ FORMUL 9 HOH *197(H2 O) HELIX 1 1 ARG A 5 ARG A 14 1 10 HELIX 2 2 TYR A 20 GLY A 22 5 3 HELIX 3 3 LEU A 25 SER A 36 1 12 HELIX 4 4 CYS A 80 LEU A 84 5 5 HELIX 5 5 THR A 89 VAL A 99 1 11 HELIX 6 6 GLY A 104 ALA A 107 5 4 HELIX 7 7 VAL A 109 ARG A 114 1 6 HELIX 8 8 VAL A 120 ILE A 124 5 5 SHEET 1 A 2 THR A 43 ARG A 45 0 SHEET 2 A 2 THR A 51 TYR A 53 -1 N ASP A 52 O ASN A 44 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.04 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.10 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.14 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.08 LINK O SER A 60 NA NA A 209 1555 1555 2.43 LINK O CYS A 64 NA NA A 209 1555 1555 2.43 LINK OG SER A 72 NA NA A 209 1555 1555 2.63 LINK O ARG A 73 NA NA A 209 1555 1555 2.48 LINK NA NA A 209 O HOH A 213 1555 1555 2.47 LINK NA NA A 209 O HOH A 226 1555 1555 2.44 SITE 1 AC1 2 TYR A 23 ASN A 113 SITE 1 AC2 3 SER A 24 GLY A 26 GLN A 121 SITE 1 AC3 4 ASN A 65 GLY A 67 ARG A 68 THR A 69 SITE 1 AC4 1 ILE A 88 SITE 1 AC5 1 LYS A 33 SITE 1 AC6 2 ASN A 65 HOH A 263 SITE 1 AC7 6 SER A 60 CYS A 64 SER A 72 ARG A 73 SITE 2 AC7 6 HOH A 213 HOH A 226 CRYST1 78.600 78.600 37.200 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012723 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012723 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026882 0.00000