PDB Short entry for 1M0P HEADER LYASE 13-JUN-02 1M0P TITLE STRUCTURE OF DIALKYLGLYCINE DECARBOXYLASE COMPLEXED WITH 1-AMINO-1- TITLE 2 PHENYLETHANEPHOSPHONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2,2-DIALKYLGLYCINE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DGD; COMPND 5 EC: 4.1.1.64; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA CEPACIA; SOURCE 3 ORGANISM_TAXID: 292; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PBTAC1 KEYWDS DECARBOXYLASE, PYRIDOXAL PHOSPHATE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR W.LIU,C.J.ROGERS,A.J.FISHER,M.D.TONEY REVDAT 4 14-FEB-24 1M0P 1 REMARK LINK REVDAT 3 24-JUL-19 1M0P 1 REMARK REVDAT 2 24-FEB-09 1M0P 1 VERSN REVDAT 1 23-OCT-02 1M0P 0 JRNL AUTH W.LIU,C.J.ROGERS,A.J.FISHER,M.D.TONEY JRNL TITL AMINOPHOSPHONATE INHIBITORS OF DIALKYLGLYCINE DECARBOXYLASE: JRNL TITL 2 STRUCTURAL BASIS FOR SLOW BINDING INHIBITION JRNL REF BIOCHEMISTRY V. 41 12320 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 12369820 JRNL DOI 10.1021/BI026318G REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 16580 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 844 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3252 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.030 ; 0.800 ; 3336 REMARK 3 BOND ANGLES (DEGREES) : 2.067 ; 1.300 ; 4501 REMARK 3 TORSION ANGLES (DEGREES) : 18.730; 0.000 ; 2010 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.014 ; 2.000 ; 72 REMARK 3 GENERAL PLANES (A) : 0.180 ; 5.000 ; 527 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.79 REMARK 3 BSOL : 199.0 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : RESTRAINED REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1000016452. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16888 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.30600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 9.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1DKA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 4000, 0.20 - 0.40 M SODIUM REMARK 280 PYRUVATE, 0.015 M MES-KOH (PH 6.4) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.21000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.42000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.21000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.42000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.21000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 56.42000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 28.21000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 56.42000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 75.38500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 130.57065 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 28.21000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 75.38500 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 130.57065 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 28.21000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 64 CA ILE A 64 CB -0.142 REMARK 500 GLU A 81 CG GLU A 81 CD 0.111 REMARK 500 SER A 84 CB SER A 84 OG 0.079 REMARK 500 ILE A 97 CA ILE A 97 CB -0.144 REMARK 500 PHE A 134 CE1 PHE A 134 CZ 0.117 REMARK 500 TYR A 183 CB TYR A 183 CG 0.109 REMARK 500 VAL A 320 CB VAL A 320 CG1 -0.164 REMARK 500 GLU A 346 CG GLU A 346 CD 0.124 REMARK 500 ALA A 380 CA ALA A 380 CB -0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 62 C - N - CD ANGL. DEV. = -15.3 DEGREES REMARK 500 ARG A 154 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 154 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 236 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LEU A 239 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG A 251 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 324 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 6 91.55 -31.33 REMARK 500 TYR A 20 22.27 -141.57 REMARK 500 ASP A 39 -174.26 -69.02 REMARK 500 ALA A 55 82.74 -40.42 REMARK 500 ASP A 76 -75.51 -88.79 REMARK 500 SER A 80 -16.13 -48.62 REMARK 500 LEU A 108 -160.70 -115.27 REMARK 500 SER A 214 -71.42 -75.68 REMARK 500 SER A 271 -85.06 -167.68 REMARK 500 PHE A 300 68.96 -156.41 REMARK 500 ASP A 319 -73.46 -42.52 REMARK 500 VAL A 332 -70.54 -62.00 REMARK 500 LEU A 359 42.95 -96.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 435 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 78 O REMARK 620 2 SER A 80 N 68.6 REMARK 620 3 SER A 80 OG 112.3 51.1 REMARK 620 4 THR A 303 O 97.1 111.8 81.2 REMARK 620 5 VAL A 305 O 154.5 110.8 82.2 106.1 REMARK 620 6 ASP A 307 OD1 68.1 135.9 162.9 81.8 104.3 REMARK 620 7 HOH A 447 O 76.1 74.2 109.4 168.9 79.2 87.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 436 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 95 O REMARK 620 2 THR A 98 O 94.1 REMARK 620 3 PRO A 99 O 162.0 73.6 REMARK 620 4 LEU A 102 O 88.8 148.7 95.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 435 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 436 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ELP A 434 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M0N RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH 1-AMINOCYCLOPENTANEPHOSPHONATE REMARK 900 RELATED ID: 1M0O RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH 1-AMINO-1-METHYLPROPANEPHOSPHONATE REMARK 900 RELATED ID: 1M0Q RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH S-1-AMINOETHANEPHOSPHONATE REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT RESIDUES GLN 15 AND GLY 81 REMARK 999 FROM THE SWISSPROT ENTRY ARE INCORRECT. THESE REMARK 999 RESIDUES SHOULD BE HIS 15 AND GLU 81 AS IN REMARK 999 AUTHORS' SEQUENCE. DBREF 1M0P A 1 433 UNP P16932 DGDA_BURCE 1 433 SEQADV 1M0P HIS A 15 UNP P16932 GLN 15 SEE REMARK 999 SEQADV 1M0P GLU A 81 UNP P16932 GLY 81 SEE REMARK 999 SEQRES 1 A 433 MET SER LEU ASN ASP ASP ALA THR PHE TRP ARG ASN ALA SEQRES 2 A 433 ARG HIS HIS LEU VAL ARG TYR GLY GLY THR PHE GLU PRO SEQRES 3 A 433 MET ILE ILE GLU ARG ALA LYS GLY SER PHE VAL TYR ASP SEQRES 4 A 433 ALA ASP GLY ARG ALA ILE LEU ASP PHE THR SER GLY GLN SEQRES 5 A 433 MET SER ALA VAL LEU GLY HIS CYS HIS PRO GLU ILE VAL SEQRES 6 A 433 SER VAL ILE GLY GLU TYR ALA GLY LYS LEU ASP HIS LEU SEQRES 7 A 433 PHE SER GLU MET LEU SER ARG PRO VAL VAL ASP LEU ALA SEQRES 8 A 433 THR ARG LEU ALA ASN ILE THR PRO PRO GLY LEU ASP ARG SEQRES 9 A 433 ALA LEU LEU LEU SER THR GLY ALA GLU SER ASN GLU ALA SEQRES 10 A 433 ALA ILE ARG MET ALA LYS LEU VAL THR GLY LYS TYR GLU SEQRES 11 A 433 ILE VAL GLY PHE ALA GLN SER TRP HIS GLY MET THR GLY SEQRES 12 A 433 ALA ALA ALA SER ALA THR TYR SER ALA GLY ARG LYS GLY SEQRES 13 A 433 VAL GLY PRO ALA ALA VAL GLY SER PHE ALA ILE PRO ALA SEQRES 14 A 433 PRO PHE THR TYR ARG PRO ARG PHE GLU ARG ASN GLY ALA SEQRES 15 A 433 TYR ASP TYR LEU ALA GLU LEU ASP TYR ALA PHE ASP LEU SEQRES 16 A 433 ILE ASP ARG GLN SER SER GLY ASN LEU ALA ALA PHE ILE SEQRES 17 A 433 ALA GLU PRO ILE LEU SER SER GLY GLY ILE ILE GLU LEU SEQRES 18 A 433 PRO ASP GLY TYR MET ALA ALA LEU LYS ARG LYS CYS GLU SEQRES 19 A 433 ALA ARG GLY MET LEU LEU ILE LEU ASP GLU ALA GLN THR SEQRES 20 A 433 GLY VAL GLY ARG THR GLY THR MET PHE ALA CYS GLN ARG SEQRES 21 A 433 ASP GLY VAL THR PRO ASP ILE LEU THR LEU SER LYS THR SEQRES 22 A 433 LEU GLY ALA GLY LEU PRO LEU ALA ALA ILE VAL THR SER SEQRES 23 A 433 ALA ALA ILE GLU GLU ARG ALA HIS GLU LEU GLY TYR LEU SEQRES 24 A 433 PHE TYR THR THR HIS VAL SER ASP PRO LEU PRO ALA ALA SEQRES 25 A 433 VAL GLY LEU ARG VAL LEU ASP VAL VAL GLN ARG ASP GLY SEQRES 26 A 433 LEU VAL ALA ARG ALA ASN VAL MET GLY ASP ARG LEU ARG SEQRES 27 A 433 ARG GLY LEU LEU ASP LEU MET GLU ARG PHE ASP CYS ILE SEQRES 28 A 433 GLY ASP VAL ARG GLY ARG GLY LEU LEU LEU GLY VAL GLU SEQRES 29 A 433 ILE VAL LYS ASP ARG ARG THR LYS GLU PRO ALA ASP GLY SEQRES 30 A 433 LEU GLY ALA LYS ILE THR ARG GLU CYS MET ASN LEU GLY SEQRES 31 A 433 LEU SER MET ASN ILE VAL GLN LEU PRO GLY MET GLY GLY SEQRES 32 A 433 VAL PHE ARG ILE ALA PRO PRO LEU THR VAL SER GLU ASP SEQRES 33 A 433 GLU ILE ASP LEU GLY LEU SER LEU LEU GLY GLN ALA ILE SEQRES 34 A 433 GLU ARG ALA LEU HET K A 435 1 HET NA A 436 1 HET ELP A 434 28 HETNAM K POTASSIUM ION HETNAM NA SODIUM ION HETNAM ELP (1R)-1-[((1E)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY) HETNAM 2 ELP METHYL]PYRIDIN-4-YL}METHYLENE)AMINO]-1- HETNAM 3 ELP PHENYLETHYLPHOSPHONIC ACID FORMUL 2 K K 1+ FORMUL 3 NA NA 1+ FORMUL 4 ELP C16 H20 N2 O8 P2 FORMUL 5 HOH *138(H2 O) HELIX 1 1 ASP A 6 LEU A 17 1 12 HELIX 2 2 THR A 49 SER A 54 1 6 HELIX 3 3 HIS A 61 LEU A 75 1 15 HELIX 4 4 SER A 84 THR A 98 1 15 HELIX 5 5 THR A 110 GLY A 127 1 18 HELIX 6 6 THR A 142 ALA A 148 1 7 HELIX 7 7 ASP A 184 SER A 200 1 17 HELIX 8 8 GLY A 224 ARG A 236 1 13 HELIX 9 9 PHE A 256 GLY A 262 1 7 HELIX 10 10 SER A 271 ALA A 276 1 6 HELIX 11 11 SER A 286 LEU A 296 1 11 HELIX 12 12 ASP A 307 ASP A 324 1 18 HELIX 13 13 GLY A 325 PHE A 348 1 24 HELIX 14 14 GLY A 377 GLY A 390 1 14 HELIX 15 15 SER A 414 LEU A 433 1 20 SHEET 1 A 4 ARG A 31 LYS A 33 0 SHEET 2 A 4 PHE A 36 TYR A 38 -1 O PHE A 36 N LYS A 33 SHEET 3 A 4 ALA A 44 ASP A 47 -1 O ILE A 45 N VAL A 37 SHEET 4 A 4 LEU A 391 SER A 392 1 O SER A 392 N LEU A 46 SHEET 1 B 7 ARG A 104 LEU A 108 0 SHEET 2 B 7 ALA A 281 THR A 285 -1 O ALA A 281 N LEU A 108 SHEET 3 B 7 ILE A 267 LEU A 270 -1 N LEU A 270 O ALA A 282 SHEET 4 B 7 LEU A 239 ASP A 243 1 N LEU A 242 O THR A 269 SHEET 5 B 7 LEU A 204 ALA A 209 1 N PHE A 207 O ILE A 241 SHEET 6 B 7 GLU A 130 PHE A 134 1 N VAL A 132 O ILE A 208 SHEET 7 B 7 SER A 164 ILE A 167 1 O ILE A 167 N GLY A 133 SHEET 1 C 2 ILE A 212 LEU A 213 0 SHEET 2 C 2 ILE A 219 GLU A 220 -1 O ILE A 219 N LEU A 213 SHEET 1 D 4 ILE A 351 ARG A 357 0 SHEET 2 D 4 LEU A 360 ILE A 365 -1 O GLY A 362 N ARG A 355 SHEET 3 D 4 GLY A 403 ILE A 407 -1 O ILE A 407 N LEU A 361 SHEET 4 D 4 ILE A 395 VAL A 396 -1 N VAL A 396 O VAL A 404 LINK O LEU A 78 K K A 435 1555 1555 2.57 LINK N SER A 80 K K A 435 1555 1555 3.46 LINK OG SER A 80 K K A 435 1555 1555 2.72 LINK O ALA A 95 NA NA A 436 1555 1555 2.30 LINK O THR A 98 NA NA A 436 1555 1555 2.25 LINK O PRO A 99 NA NA A 436 1555 1555 2.32 LINK O LEU A 102 NA NA A 436 1555 1555 2.76 LINK O THR A 303 K K A 435 1555 1555 2.91 LINK O VAL A 305 K K A 435 1555 1555 2.63 LINK OD1 ASP A 307 K K A 435 1555 1555 2.61 LINK K K A 435 O HOH A 447 1555 1555 2.74 SITE 1 AC1 6 LEU A 78 SER A 80 THR A 303 VAL A 305 SITE 2 AC1 6 ASP A 307 HOH A 447 SITE 1 AC2 4 ALA A 95 THR A 98 PRO A 99 LEU A 102 SITE 1 AC3 22 GLN A 52 MET A 53 THR A 110 ALA A 112 SITE 2 AC3 22 TRP A 138 HIS A 139 GLU A 210 SER A 215 SITE 3 AC3 22 ASP A 243 ALA A 245 GLN A 246 LYS A 272 SITE 4 AC3 22 TYR A 301 THR A 302 THR A 303 ARG A 406 SITE 5 AC3 22 HOH A 441 HOH A 469 HOH A 481 HOH A 488 SITE 6 AC3 22 HOH A 492 HOH A 557 CRYST1 150.770 150.770 84.630 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006633 0.003829 0.000000 0.00000 SCALE2 0.000000 0.007659 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011816 0.00000