PDB Short entry for 1M2K HEADER GENE REGULATION 24-JUN-02 1M2K TITLE SIR2 HOMOLOGUE F159A MUTANT-ADP RIBOSE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SILENT INFORMATION REGULATOR 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRANSCRIPTIONAL REGULATORY PROTEIN, SIR2 FAMILY; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE-30 KEYWDS PROTEIN-LIGAND COMPLEX, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR J.CHANG,Y.CHO REVDAT 3 10-NOV-21 1M2K 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1M2K 1 VERSN REVDAT 1 08-APR-03 1M2K 0 JRNL AUTH J.H.CHANG,H.C.KIM,K.Y.HWANG,J.W.LEE,S.P.JACKSON,S.D.BELL, JRNL AUTH 2 Y.CHO JRNL TITL STRUCTURAL BASIS FOR THE NAD-DEPENDENT DEACETYLASE MECHANISM JRNL TITL 2 OF SIR2 JRNL REF J.BIOL.CHEM. V. 277 34489 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12091395 JRNL DOI 10.1074/JBC.M205460200 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 718272.440 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.8 REMARK 3 NUMBER OF REFLECTIONS : 36847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2592 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4329 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 344 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1935 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 347 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.86000 REMARK 3 B22 (A**2) : -1.95000 REMARK 3 B33 (A**2) : -1.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.900 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.280 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.010 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.070 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.040 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 56.04 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ISOFNAD.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ISOFNAD.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUN-02. REMARK 100 THE DEPOSITION ID IS D_1000016517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAC SCIENCE DIP-2030 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM CITRATE, ISOPROPANOL, REMARK 280 PH 6.0, EVAPORATION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.37900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA TRP A 63 O HOH A 1134 0.32 REMARK 500 N ASN A 111 O HOH A 1127 0.36 REMARK 500 CD ARG A 110 O HOH A 1302 0.39 REMARK 500 O PRO A 192 O HOH A 1157 0.44 REMARK 500 CA GLN A 51 O HOH A 1042 0.45 REMARK 500 O3A APR A 1001 O HOH A 1075 0.50 REMARK 500 CG1 VAL A 112 O HOH A 1165 0.50 REMARK 500 C GLY A 230 O HOH A 1178 0.51 REMARK 500 O VAL A 122 O HOH A 1023 0.56 REMARK 500 CZ2 TRP A 158 O HOH A 1005 0.60 REMARK 500 CG GLU A 87 O HOH A 1173 0.63 REMARK 500 CB ARG A 110 O HOH A 1280 0.66 REMARK 500 CG LEU A 225 O HOH A 1193 0.68 REMARK 500 CG1 ILE A 9 O HOH A 1214 0.70 REMARK 500 CG GLU A 26 O HOH A 1132 0.76 REMARK 500 CD GLU A 231 O HOH A 1199 0.76 REMARK 500 O LEU A 92 O HOH A 1301 0.83 REMARK 500 N ASN A 40 O HOH A 1114 0.85 REMARK 500 CD GLU A 26 O HOH A 1132 0.86 REMARK 500 O GLY A 230 O HOH A 1178 0.87 REMARK 500 O VAL A 232 O HOH A 1304 0.93 REMARK 500 O GLY A 108 O HOH A 1336 0.97 REMARK 500 CE LYS A 78 O HOH A 1153 0.98 REMARK 500 NH2 ARG A 33 O HOH A 1090 0.98 REMARK 500 C ARG A 110 O HOH A 1127 1.00 REMARK 500 O HOH A 1026 O HOH A 1213 1.03 REMARK 500 CE1 TYR A 42 O HOH A 1041 1.03 REMARK 500 N LYS A 7 O HOH A 1196 1.04 REMARK 500 N VAL A 190 O HOH A 1281 1.11 REMARK 500 N ALA A 79 O HOH A 1318 1.14 REMARK 500 N LEU A 92 O HOH A 1287 1.14 REMARK 500 CA ASP A 234 O HOH A 1253 1.15 REMARK 500 CD GLU A 87 O HOH A 1219 1.17 REMARK 500 N GLU A 231 O HOH A 1305 1.17 REMARK 500 N ARG A 88 O HOH A 1187 1.18 REMARK 500 CD GLU A 87 O HOH A 1173 1.19 REMARK 500 OE2 GLU A 231 O HOH A 1199 1.19 REMARK 500 CG1 VAL A 122 O HOH A 1229 1.19 REMARK 500 O GLU A 11 O HOH A 1118 1.19 REMARK 500 CA ASN A 40 O HOH A 1114 1.20 REMARK 500 NH2 ARG A 110 O HOH A 1306 1.21 REMARK 500 O ASN A 77 O HOH A 1271 1.21 REMARK 500 CA ARG A 88 O HOH A 1187 1.22 REMARK 500 C LYS A 78 O HOH A 1318 1.23 REMARK 500 C GLU A 235 O HOH A 1317 1.23 REMARK 500 CA VAL A 190 O HOH A 1281 1.24 REMARK 500 CD1 LEU A 86 O HOH A 1044 1.24 REMARK 500 CD1 ILE A 208 O HOH A 1319 1.25 REMARK 500 CD1 TYR A 42 O HOH A 1041 1.26 REMARK 500 CH2 TRP A 158 O HOH A 1005 1.27 REMARK 500 REMARK 500 THIS ENTRY HAS 230 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB GLU A 45 O HOH A 1078 2545 0.73 REMARK 500 O HOH A 1145 O HOH A 1293 1556 0.91 REMARK 500 CG GLU A 45 O HOH A 1078 2545 1.20 REMARK 500 O HOH A 1108 O HOH A 1244 2545 1.20 REMARK 500 CD1 LEU A 142 O HOH A 1149 2545 1.47 REMARK 500 CZ ARG A 238 O HOH A 1274 1455 1.48 REMARK 500 N LYS A 228 O HOH A 1205 1455 1.58 REMARK 500 O HOH A 1034 O HOH A 1345 1655 1.60 REMARK 500 OD2 ASP A 234 O HOH A 1130 1455 1.63 REMARK 500 CZ ARG A 43 O HOH A 1060 2545 1.68 REMARK 500 NH1 ARG A 238 O HOH A 1274 1455 1.73 REMARK 500 NZ LYS A 78 O HOH A 1148 1455 1.76 REMARK 500 CG ASP A 234 O HOH A 1130 1455 1.77 REMARK 500 O HOH A 1045 O HOH A 1064 1554 1.80 REMARK 500 NE ARG A 238 O HOH A 1274 1455 1.81 REMARK 500 CD2 LEU A 248 O HOH A 1033 2656 1.88 REMARK 500 CG LEU A 142 O HOH A 1149 2545 1.91 REMARK 500 NH2 ARG A 238 O HOH A 1130 1455 1.97 REMARK 500 OD1 ASP A 234 O HOH A 1130 1455 2.00 REMARK 500 NH1 ARG A 43 O HOH A 1060 2545 2.05 REMARK 500 CD GLU A 45 O HOH A 1078 2545 2.05 REMARK 500 NH2 ARG A 43 O HOH A 1060 2545 2.08 REMARK 500 CA GLU A 45 O HOH A 1078 2545 2.10 REMARK 500 C GLY A 227 O HOH A 1205 1455 2.12 REMARK 500 CB ARG A 238 O HOH A 1274 1455 2.17 REMARK 500 CB LEU A 142 O HOH A 1149 2545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 14 86.83 -152.28 REMARK 500 ARG A 41 -70.53 -105.12 REMARK 500 ALA A 48 65.99 -115.91 REMARK 500 CYS A 148 -142.21 -123.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 999 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 124 SG REMARK 620 2 CYS A 127 SG 109.0 REMARK 620 3 CYS A 145 SG 108.3 110.8 REMARK 620 4 CYS A 148 SG 107.9 109.8 110.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APR A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M2G RELATED DB: PDB REMARK 900 1M2G CONTAINS THE SAME PROTEIN, WILD TYPE REMARK 900 RELATED ID: 1M2H RELATED DB: PDB REMARK 900 1M2H CONTAINS THE SAME PROTEIN S24A MUTANT REMARK 900 RELATED ID: 1M2J RELATED DB: PDB REMARK 900 1M2J CONTAINS THE SAME PROTEIN H80N MUTANT REMARK 900 RELATED ID: 1M2N RELATED DB: PDB REMARK 900 1M2N CONTAINS THE SAME PROTEIN D102G, F159A, R170A MUTANT DBREF 1M2K A 1 245 UNP O28597 NPD1_ARCFU 1 245 SEQADV 1M2K ALA A 159 UNP O28597 PHE 159 ENGINEERED MUTATION SEQADV 1M2K LEU A 246 UNP O28597 CLONING ARTIFACT SEQADV 1M2K LYS A 247 UNP O28597 CLONING ARTIFACT SEQADV 1M2K LEU A 248 UNP O28597 CLONING ARTIFACT SEQADV 1M2K ASN A 249 UNP O28597 CLONING ARTIFACT SEQRES 1 A 249 MET ASP GLU LYS LEU LEU LYS THR ILE ALA GLU SER LYS SEQRES 2 A 249 TYR LEU VAL ALA LEU THR GLY ALA GLY VAL SER ALA GLU SEQRES 3 A 249 SER GLY ILE PRO THR PHE ARG GLY LYS ASP GLY LEU TRP SEQRES 4 A 249 ASN ARG TYR ARG PRO GLU GLU LEU ALA ASN PRO GLN ALA SEQRES 5 A 249 PHE ALA LYS ASP PRO GLU LYS VAL TRP LYS TRP TYR ALA SEQRES 6 A 249 TRP ARG MET GLU LYS VAL PHE ASN ALA GLN PRO ASN LYS SEQRES 7 A 249 ALA HIS GLN ALA PHE ALA GLU LEU GLU ARG LEU GLY VAL SEQRES 8 A 249 LEU LYS CYS LEU ILE THR GLN ASN VAL ASP ASP LEU HIS SEQRES 9 A 249 GLU ARG ALA GLY SER ARG ASN VAL ILE HIS LEU HIS GLY SEQRES 10 A 249 SER LEU ARG VAL VAL ARG CYS THR SER CYS ASN ASN SER SEQRES 11 A 249 PHE GLU VAL GLU SER ALA PRO LYS ILE PRO PRO LEU PRO SEQRES 12 A 249 LYS CYS ASP LYS CYS GLY SER LEU LEU ARG PRO GLY VAL SEQRES 13 A 249 VAL TRP ALA GLY GLU MET LEU PRO PRO ASP VAL LEU ASP SEQRES 14 A 249 ARG ALA MET ARG GLU VAL GLU ARG ALA ASP VAL ILE ILE SEQRES 15 A 249 VAL ALA GLY THR SER ALA VAL VAL GLN PRO ALA ALA SER SEQRES 16 A 249 LEU PRO LEU ILE VAL LYS GLN ARG GLY GLY ALA ILE ILE SEQRES 17 A 249 GLU ILE ASN PRO ASP GLU THR PRO LEU THR PRO ILE ALA SEQRES 18 A 249 ASP TYR SER LEU ARG GLY LYS ALA GLY GLU VAL MET ASP SEQRES 19 A 249 GLU LEU VAL ARG HIS VAL ARG LYS ALA LEU SER LEU LYS SEQRES 20 A 249 LEU ASN HET ZN A 999 1 HET APR A1001 36 HETNAM ZN ZINC ION HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 2 ZN ZN 2+ FORMUL 3 APR C15 H23 N5 O14 P2 FORMUL 4 HOH *347(H2 O) HELIX 1 1 ASP A 2 GLU A 11 1 10 HELIX 2 2 ALA A 21 GLY A 28 5 8 HELIX 3 3 GLY A 37 TYR A 42 1 6 HELIX 4 4 ARG A 43 ALA A 48 1 6 HELIX 5 5 ASN A 49 ASP A 56 1 8 HELIX 6 6 ASP A 56 ALA A 74 1 19 HELIX 7 7 ASN A 77 LEU A 89 1 13 HELIX 8 8 ASP A 102 ALA A 107 1 6 HELIX 9 9 PRO A 164 ALA A 178 1 15 HELIX 10 10 PRO A 192 ALA A 194 5 3 HELIX 11 11 SER A 195 ARG A 203 1 9 HELIX 12 12 LEU A 217 ALA A 221 5 5 HELIX 13 13 LYS A 228 LEU A 246 1 19 SHEET 1 A 6 VAL A 112 HIS A 114 0 SHEET 2 A 6 LEU A 92 THR A 97 1 N THR A 97 O ILE A 113 SHEET 3 A 6 LEU A 15 THR A 19 1 N ALA A 17 O ILE A 96 SHEET 4 A 6 VAL A 180 ALA A 184 1 O ILE A 182 N LEU A 18 SHEET 5 A 6 ALA A 206 ILE A 210 1 O ILE A 208 N VAL A 183 SHEET 6 A 6 TYR A 223 LEU A 225 1 O TYR A 223 N GLU A 209 SHEET 1 B 3 SER A 130 GLU A 132 0 SHEET 2 B 3 GLY A 117 CYS A 124 -1 N VAL A 122 O PHE A 131 SHEET 3 B 3 LEU A 152 VAL A 156 -1 O ARG A 153 N ARG A 123 LINK SG CYS A 124 ZN ZN A 999 1555 1555 2.29 LINK SG CYS A 127 ZN ZN A 999 1555 1555 2.30 LINK SG CYS A 145 ZN ZN A 999 1555 1555 2.31 LINK SG CYS A 148 ZN ZN A 999 1555 1555 2.31 CISPEP 1 ILE A 139 PRO A 140 0 -0.06 CISPEP 2 PRO A 140 PRO A 141 0 0.00 CISPEP 3 GLN A 191 PRO A 192 0 0.06 SITE 1 AC1 4 CYS A 124 CYS A 127 CYS A 145 CYS A 148 SITE 1 AC2 25 GLY A 20 ALA A 21 GLY A 22 GLU A 26 SITE 2 AC2 25 THR A 31 PHE A 32 ARG A 33 TRP A 39 SITE 3 AC2 25 GLN A 98 HIS A 116 GLY A 185 THR A 186 SITE 4 AC2 25 SER A 187 VAL A 190 ASN A 211 PRO A 212 SITE 5 AC2 25 LYS A 228 ALA A 229 HOH A1075 HOH A1090 SITE 6 AC2 25 HOH A1101 HOH A1136 HOH A1156 HOH A1254 SITE 7 AC2 25 HOH A1340 CRYST1 35.109 84.758 44.742 90.00 109.21 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028483 0.000000 0.009925 0.00000 SCALE2 0.000000 0.011798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023669 0.00000