PDB Short entry for 1M8U HEADER STRUCTURAL PROTEIN 26-JUL-02 1M8U TITLE CRYSTAL STRUCTURE OF BOVINE GAMMA-E AT 1.65 ANG RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-E; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 OTHER_DETAILS: EXTRACTED FROM CALF EYE LENS KEYWDS GAMMA-CRYSTALLIN, GAMMA-E, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.MAYER,N.AGUEZNAY,F.SKOURI-PANET,K.PRAT,T.PUTILINA,S.BIARROTTE- AUTHOR 2 SORIN,A.TARDIEU REVDAT 3 14-FEB-24 1M8U 1 REMARK REVDAT 2 24-FEB-09 1M8U 1 VERSN REVDAT 1 05-AUG-03 1M8U 0 JRNL AUTH C.MAYER,N.AGUEZNAY,F.SKOURI-PANET,K.PRAT,T.PUTILINA, JRNL AUTH 2 S.BIARROTTE-SORIN,A.TARDIEU JRNL TITL CRYSTAL STRUCTURE OF BOVINE GAMMA-E JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 19708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 932 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 0.74 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1496 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 89 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1487 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 315 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42300 REMARK 3 B22 (A**2) : 0.59100 REMARK 3 B33 (A**2) : -1.01400 REMARK 3 B12 (A**2) : 0.28100 REMARK 3 B13 (A**2) : -0.50000 REMARK 3 B23 (A**2) : -0.29200 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.08 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.09 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.050 REMARK 3 BOND ANGLES (DEGREES) : 1.280 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.820 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.080 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.464 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.953 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.764 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M8U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1000016740. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : MIRROR + DOUBLE CRYSTAL + MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20771 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.10400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1A5D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3000, SODIUM ACETATE, PH 4.5, REMARK 280 MICROBATCH, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 DBREF 1M8U A 1 174 UNP P23005 CRGF_BOVIN 1 173 SEQRES 1 A 173 GLY LYS ILE THR PHE TYR GLU ASP ARG GLY PHE GLN GLY SEQRES 2 A 173 ARG HIS TYR GLU CYS SER SER ASP HIS SER ASN LEU GLN SEQRES 3 A 173 PRO TYR PHE SER ARG CYS ASN SER ILE ARG VAL ASP SER SEQRES 4 A 173 GLY CYS TRP MET ILE TYR GLU GLN PRO ASN PHE GLN GLY SEQRES 5 A 173 PRO GLN TYR PHE LEU ARG ARG GLY ASP TYR PRO ASP TYR SEQRES 6 A 173 GLN GLN TRP MET GLY LEU ASN ASP SER ILE ARG SER CYS SEQRES 7 A 173 ARG LEU ILE PRO HIS THR SER SER HIS ARG LEU ARG ILE SEQRES 8 A 173 TYR GLU ARG GLU ASP TYR ARG GLY GLN MET VAL GLU ILE SEQRES 9 A 173 THR GLU ASP CYS SER SER LEU HIS GLU ARG PHE HIS PHE SEQRES 10 A 173 SER GLU ILE HIS SER PHE HIS VAL LEU GLU GLY TRP TRP SEQRES 11 A 173 VAL LEU TYR GLU MET PRO ASN TYR ARG GLY ARG GLN TYR SEQRES 12 A 173 LEU LEU ARG PRO GLY ASP TYR ARG ARG TYR HIS GLU TRP SEQRES 13 A 173 GLY ALA VAL ASP ALA ARG VAL GLY SER LEU ARG ARG ALA SEQRES 14 A 173 VAL ASP PHE TYR FORMUL 2 HOH *315(H2 O) HELIX 1 1 GLN A 47 GLN A 51 5 5 HELIX 2 2 ASP A 64 MET A 69 5 6 HELIX 3 3 ARG A 153 GLY A 158 5 6 SHEET 1 A 4 GLN A 12 CYS A 18 0 SHEET 2 A 4 LYS A 2 ASP A 8 -1 N ILE A 3 O CYS A 18 SHEET 3 A 4 SER A 34 SER A 39 -1 O SER A 34 N TYR A 6 SHEET 4 A 4 GLY A 60 TYR A 62 -1 O GLY A 60 N VAL A 37 SHEET 1 B 3 GLN A 54 LEU A 57 0 SHEET 2 B 3 TRP A 42 TYR A 45 -1 N TRP A 42 O LEU A 57 SHEET 3 B 3 SER A 77 LEU A 80 -1 O SER A 77 N TYR A 45 SHEET 1 C 4 ARG A 99 ILE A 105 0 SHEET 2 C 4 ARG A 89 ARG A 95 -1 N LEU A 90 O ILE A 105 SHEET 3 C 4 SER A 123 GLU A 128 -1 O SER A 123 N TYR A 93 SHEET 4 C 4 GLY A 149 TYR A 151 -1 O TYR A 151 N PHE A 124 SHEET 1 D 3 ARG A 140 LEU A 146 0 SHEET 2 D 3 TRP A 131 MET A 136 -1 N TRP A 131 O LEU A 146 SHEET 3 D 3 SER A 166 ARG A 169 -1 O SER A 166 N TYR A 134 CRYST1 30.800 36.710 46.250 100.06 106.92 105.27 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032468 0.008864 0.012773 0.00000 SCALE2 0.000000 0.028237 0.007991 0.00000 SCALE3 0.000000 0.000000 0.023488 0.00000