PDB Short entry for 1MBX HEADER PROTEIN BINDING 03-AUG-02 1MBX TITLE CRYSTAL STRUCTURE ANALYSIS OF CLPSN WITH TRANSITION METAL ION BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLP A; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN YLJA; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: DH5 ALPHA; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD33-YLJA; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: SG22176; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PFG42 KEYWDS PROTEIN BINDING, ADAPTORS, HSP100/CLP CHAPERONE, AAA+ FAMILY, ATP- KEYWDS 2 DEPENDENT PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR F.GUO,L.ESSER,S.K.SINGH,M.R.MAURIZI,D.XIA REVDAT 6 14-FEB-24 1MBX 1 REMARK REVDAT 5 04-APR-18 1MBX 1 REMARK REVDAT 4 31-JAN-18 1MBX 1 REMARK REVDAT 3 13-JUL-11 1MBX 1 VERSN REVDAT 2 24-FEB-09 1MBX 1 VERSN REVDAT 1 11-DEC-02 1MBX 0 JRNL AUTH F.GUO,L.ESSER,S.K.SINGH,M.R.MAURIZI,D.XIA JRNL TITL CRYSTAL STRUCTURE OF THE HETERODIMERIC COMPLEX OF THE JRNL TITL 2 ADAPTOR, CLPS, WITH THE N-DOMAIN OF THE AAA+ CHAPERONE, CLPA JRNL REF J.BIOL.CHEM. V. 277 46753 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12235156 JRNL DOI 10.1074/JBC.M208104200 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 511609.520 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 43733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4404 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9247 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 569 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3631 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.84000 REMARK 3 B22 (A**2) : -1.84000 REMARK 3 B33 (A**2) : 3.68000 REMARK 3 B12 (A**2) : 1.99000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.080 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.460 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.390 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.590 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.790 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 39.87 REMARK 3 REMARK 3 NCS MODEL : RESTRAINED REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : YBT.PAR REMARK 3 PARAMETER FILE 4 : GOL.PAR REMARK 3 PARAMETER FILE 5 : ION.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : YBT.TOP REMARK 3 TOPOLOGY FILE 4 : GOL.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1000016807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48936 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 46.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 48.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.67900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: PDB ENTRY 1MBU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: GLYCEROL, BIS-TRIS , YTTRIUM CHLORIDE, REMARK 280 PH 6.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 21K, REMARK 280 TEMPERATURE 294.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.98500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 141.97000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 141.97000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.98500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS TWO HETERODIMERS OF CLPSN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 LYS C 3 REMARK 465 THR C 4 REMARK 465 ASN C 5 REMARK 465 ASP C 6 REMARK 465 TRP C 7 REMARK 465 LEU C 8 REMARK 465 ASP C 9 REMARK 465 PHE C 10 REMARK 465 ASP C 11 REMARK 465 GLN C 12 REMARK 465 LEU C 13 REMARK 465 ALA C 14 REMARK 465 GLU C 15 REMARK 465 GLU C 16 REMARK 465 LYS C 17 REMARK 465 VAL C 18 REMARK 465 ARG C 19 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 LYS D 3 REMARK 465 THR D 4 REMARK 465 ASN D 5 REMARK 465 ASP D 6 REMARK 465 TRP D 7 REMARK 465 LEU D 8 REMARK 465 ASP D 9 REMARK 465 PHE D 10 REMARK 465 ASP D 11 REMARK 465 GLN D 12 REMARK 465 LEU D 13 REMARK 465 ALA D 14 REMARK 465 GLU D 15 REMARK 465 GLU D 16 REMARK 465 LYS D 17 REMARK 465 VAL D 18 REMARK 465 ARG D 19 REMARK 465 ASP D 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP C 20 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 28 O HOH A 259 1.98 REMARK 500 O HOH A 223 O HOH A 259 2.05 REMARK 500 OE1 GLU C 79 O HOH A 259 2.07 REMARK 500 ND1 HIS D 66 Y1 YBT D 107 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 16 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 72 -79.12 -60.61 REMARK 500 GLU A 73 104.34 -37.36 REMARK 500 THR A 78 120.97 -38.74 REMARK 500 SER B 72 -71.46 -52.42 REMARK 500 GLU B 73 100.13 -30.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 210 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 22 NE2 REMARK 620 2 GLU A 63 OE2 112.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 211 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 20 ND1 REMARK 620 2 HIS B 22 NE2 112.1 REMARK 620 3 GLU B 63 OE2 104.8 122.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YBT B 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YBT A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YBT B 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YBT A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YBT D 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 215 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MBU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF CLPSN HETERODIMER REMARK 900 RELATED ID: 1MBV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF CLPSN HETERODIMER TETERAGONAL FORM DBREF 1MBX A 1 142 UNP P0ABH9 CLPA_ECOLI 1 142 DBREF 1MBX B 1 142 UNP P0ABH9 CLPA_ECOLI 1 142 DBREF 1MBX C 1 106 UNP P0A8Q6 CLPS_ECOLI 1 106 DBREF 1MBX D 1 106 UNP P0A8Q6 CLPS_ECOLI 1 106 SEQRES 1 A 142 MET LEU ASN GLN GLU LEU GLU LEU SER LEU ASN MET ALA SEQRES 2 A 142 PHE ALA ARG ALA ARG GLU HIS ARG HIS GLU PHE MET THR SEQRES 3 A 142 VAL GLU HIS LEU LEU LEU ALA LEU LEU SER ASN PRO SER SEQRES 4 A 142 ALA ARG GLU ALA LEU GLU ALA CYS SER VAL ASP LEU VAL SEQRES 5 A 142 ALA LEU ARG GLN GLU LEU GLU ALA PHE ILE GLU GLN THR SEQRES 6 A 142 THR PRO VAL LEU PRO ALA SER GLU GLU GLU ARG ASP THR SEQRES 7 A 142 GLN PRO THR LEU SER PHE GLN ARG VAL LEU GLN ARG ALA SEQRES 8 A 142 VAL PHE HIS VAL GLN SER SER GLY ARG ASN GLU VAL THR SEQRES 9 A 142 GLY ALA ASN VAL LEU VAL ALA ILE PHE SER GLU GLN GLU SEQRES 10 A 142 SER GLN ALA ALA TYR LEU LEU ARG LYS HIS GLU VAL SER SEQRES 11 A 142 ARG LEU ASP VAL VAL ASN PHE ILE SER HIS GLY THR SEQRES 1 B 142 MET LEU ASN GLN GLU LEU GLU LEU SER LEU ASN MET ALA SEQRES 2 B 142 PHE ALA ARG ALA ARG GLU HIS ARG HIS GLU PHE MET THR SEQRES 3 B 142 VAL GLU HIS LEU LEU LEU ALA LEU LEU SER ASN PRO SER SEQRES 4 B 142 ALA ARG GLU ALA LEU GLU ALA CYS SER VAL ASP LEU VAL SEQRES 5 B 142 ALA LEU ARG GLN GLU LEU GLU ALA PHE ILE GLU GLN THR SEQRES 6 B 142 THR PRO VAL LEU PRO ALA SER GLU GLU GLU ARG ASP THR SEQRES 7 B 142 GLN PRO THR LEU SER PHE GLN ARG VAL LEU GLN ARG ALA SEQRES 8 B 142 VAL PHE HIS VAL GLN SER SER GLY ARG ASN GLU VAL THR SEQRES 9 B 142 GLY ALA ASN VAL LEU VAL ALA ILE PHE SER GLU GLN GLU SEQRES 10 B 142 SER GLN ALA ALA TYR LEU LEU ARG LYS HIS GLU VAL SER SEQRES 11 B 142 ARG LEU ASP VAL VAL ASN PHE ILE SER HIS GLY THR SEQRES 1 C 106 MET GLY LYS THR ASN ASP TRP LEU ASP PHE ASP GLN LEU SEQRES 2 C 106 ALA GLU GLU LYS VAL ARG ASP ALA LEU LYS PRO PRO SER SEQRES 3 C 106 MET TYR LYS VAL ILE LEU VAL ASN ASP ASP TYR THR PRO SEQRES 4 C 106 MET GLU PHE VAL ILE ASP VAL LEU GLN LYS PHE PHE SER SEQRES 5 C 106 TYR ASP VAL GLU ARG ALA THR GLN LEU MET LEU ALA VAL SEQRES 6 C 106 HIS TYR GLN GLY LYS ALA ILE CYS GLY VAL PHE THR ALA SEQRES 7 C 106 GLU VAL ALA GLU THR LYS VAL ALA MET VAL ASN LYS TYR SEQRES 8 C 106 ALA ARG GLU ASN GLU HIS PRO LEU LEU CYS THR LEU GLU SEQRES 9 C 106 LYS ALA SEQRES 1 D 106 MET GLY LYS THR ASN ASP TRP LEU ASP PHE ASP GLN LEU SEQRES 2 D 106 ALA GLU GLU LYS VAL ARG ASP ALA LEU LYS PRO PRO SER SEQRES 3 D 106 MET TYR LYS VAL ILE LEU VAL ASN ASP ASP TYR THR PRO SEQRES 4 D 106 MET GLU PHE VAL ILE ASP VAL LEU GLN LYS PHE PHE SER SEQRES 5 D 106 TYR ASP VAL GLU ARG ALA THR GLN LEU MET LEU ALA VAL SEQRES 6 D 106 HIS TYR GLN GLY LYS ALA ILE CYS GLY VAL PHE THR ALA SEQRES 7 D 106 GLU VAL ALA GLU THR LYS VAL ALA MET VAL ASN LYS TYR SEQRES 8 D 106 ALA ARG GLU ASN GLU HIS PRO LEU LEU CYS THR LEU GLU SEQRES 9 D 106 LYS ALA HET ZN A 210 1 HET YBT A 211 15 HET YBT A 212 15 HET GOL A 213 6 HET CL B 143 1 HET ZN B 211 1 HET YBT B 212 15 HET YBT B 213 15 HET GOL B 214 6 HET GOL B 215 6 HET YBT D 107 15 HETNAM ZN ZINC ION HETNAM YBT BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYDROXYMETHYL)METHANE HETNAM 2 YBT YTTRIUM HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 ZN 2(ZN 2+) FORMUL 6 YBT 5(C8 H19 N O5 Y) FORMUL 8 GOL 3(C3 H8 O3) FORMUL 9 CL CL 1- FORMUL 16 HOH *184(H2 O) HELIX 1 1 ASN A 3 HIS A 20 1 18 HELIX 2 2 THR A 26 LEU A 35 1 10 HELIX 3 3 ASN A 37 CYS A 47 1 11 HELIX 4 4 ASP A 50 THR A 66 1 17 HELIX 5 5 THR A 81 SER A 98 1 18 HELIX 6 6 THR A 104 PHE A 113 1 10 HELIX 7 7 SER A 118 HIS A 127 1 10 HELIX 8 8 SER A 130 GLY A 141 1 12 HELIX 9 9 ASN B 3 HIS B 20 1 18 HELIX 10 10 THR B 26 LEU B 35 1 10 HELIX 11 11 ASN B 37 ALA B 46 1 10 HELIX 12 12 ASP B 50 THR B 66 1 17 HELIX 13 13 THR B 81 SER B 98 1 18 HELIX 14 14 THR B 104 PHE B 113 1 10 HELIX 15 15 SER B 118 HIS B 127 1 10 HELIX 16 16 SER B 130 GLY B 141 1 12 HELIX 17 17 PRO C 39 SER C 52 1 14 HELIX 18 18 ASP C 54 GLY C 69 1 16 HELIX 19 19 ALA C 78 ASN C 95 1 18 HELIX 20 20 PRO D 39 SER D 52 1 14 HELIX 21 21 ASP D 54 GLY D 69 1 16 HELIX 22 22 ALA D 78 ASN D 95 1 18 SHEET 1 A 2 PHE A 24 MET A 25 0 SHEET 2 A 2 GLN A 79 PRO A 80 1 O GLN A 79 N MET A 25 SHEET 1 B 2 PHE B 24 MET B 25 0 SHEET 2 B 2 GLN B 79 PRO B 80 1 O GLN B 79 N MET B 25 SHEET 1 C 3 LYS C 70 THR C 77 0 SHEET 2 C 3 MET C 27 VAL C 33 -1 N TYR C 28 O PHE C 76 SHEET 3 C 3 LEU C 100 LYS C 105 -1 O THR C 102 N ILE C 31 SHEET 1 D 3 LYS D 70 THR D 77 0 SHEET 2 D 3 MET D 27 VAL D 33 -1 N TYR D 28 O PHE D 76 SHEET 3 D 3 LEU D 100 LYS D 105 -1 O THR D 102 N ILE D 31 LINK NE2 HIS A 22 ZN ZN A 210 1555 1555 2.04 LINK OE2 GLU A 63 ZN ZN A 210 1555 1555 2.26 LINK ND1 HIS B 20 ZN ZN B 211 1555 1555 2.23 LINK NE2 HIS B 22 ZN ZN B 211 1555 1555 2.09 LINK OE2 GLU B 63 ZN ZN B 211 1555 1555 2.06 SITE 1 AC1 5 ASN B 3 LEU B 6 ASN B 37 THR B 104 SITE 2 AC1 5 GLY B 105 SITE 1 AC2 4 HIS A 20 HIS A 22 GLU A 63 HOH A 214 SITE 1 AC3 4 HIS B 20 HIS B 22 GLU B 63 HOH B 216 SITE 1 AC4 7 ASN B 3 GLN B 4 GLU B 5 GLU B 102 SITE 2 AC4 7 HOH B 250 HOH B 262 GLU C 41 SITE 1 AC5 5 ARG A 41 GLU A 42 GLU A 45 HOH A 215 SITE 2 AC5 5 HOH A 253 SITE 1 AC6 6 ARG B 41 GLU B 42 GLU B 45 HOH B 218 SITE 2 AC6 6 HOH B 241 HOH B 272 SITE 1 AC7 5 MET A 1 GLU A 7 ASP D 54 GLU D 56 SITE 2 AC7 5 HOH D 140 SITE 1 AC8 9 GLU A 19 ASN D 34 ASP D 35 ASP D 36 SITE 2 AC8 9 TYR D 37 THR D 38 MET D 40 MET D 62 SITE 3 AC8 9 HIS D 66 SITE 1 AC9 3 GLU A 117 HOH A 260 HOH C 113 SITE 1 BC1 3 GLU B 117 HOH B 231 HOH B 242 SITE 1 BC2 2 GLU B 128 ASP B 133 CRYST1 87.436 87.436 212.955 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011437 0.006603 0.000000 0.00000 SCALE2 0.000000 0.013206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004696 0.00000