PDB Short entry for 1MC3 HEADER TRANSFERASE 05-AUG-02 1MC3 TITLE CRYSTAL STRUCTURE OF RFFH COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RFFH, DTDP-GLUCOSE SYNTHASE, DTDP-GLUCOSE PYROPHOSPHORYLASE; COMPND 5 EC: 2.7.7.24; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: DL41 KEYWDS GLUCOSE-1-PHOSPHATE THYMIDYLYTRANSFERASE, RFFH, MONTREAL-KINGSTON KEYWDS 2 BACTERIAL STRUCTURAL GENOMICS INITIATIVE, BSGI, STRUCTURAL GENOMICS, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.SIVARAMAN,V.SAUVE,A.MATTE,M.CYGLER,MONTREAL-KINGSTON BACTERIAL AUTHOR 2 STRUCTURAL GENOMICS INITIATIVE (BSGI) REVDAT 4 31-JAN-18 1MC3 1 REMARK REVDAT 3 11-OCT-17 1MC3 1 REMARK REVDAT 2 24-FEB-09 1MC3 1 VERSN REVDAT 1 20-NOV-02 1MC3 0 JRNL AUTH J.SIVARAMAN,V.SAUVE,A.MATTE,M.CYGLER JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI GLUCOSE-1-PHOSPHATE JRNL TITL 2 THYMIDYLYLTRANSFERASE (RFFH) COMPLEXED WITH DTTP AND MG2+ JRNL REF J.BIOL.CHEM. V. 277 44214 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12171937 JRNL DOI 10.1074/JBC.M206932200 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.4 REMARK 3 NUMBER OF REFLECTIONS : 16531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDAM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1661 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4332 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MC3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1000016813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-00 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16531 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 46.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38200 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8K 16%, 0.1M MES, 0.4M MGCL2, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 18K, TEMPERATURE REMARK 280 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 72.16900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.84100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 72.16900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.84100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 144.33800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ARG A 291 REMARK 465 GLN A 292 REMARK 465 TYR A 293 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 ARG B 291 REMARK 465 GLN B 292 REMARK 465 TYR B 293 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 74 CG CD OE1 NE2 REMARK 470 THR A 95 OG1 CG2 REMARK 470 VAL A 123 CG1 CG2 REMARK 470 ALA A 125 CB REMARK 470 THR A 127 CB OG1 CG2 REMARK 470 GLU A 128 CB CG CD OE1 OE2 REMARK 470 VAL A 137 CG1 CG2 REMARK 470 ARG A 142 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 143 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 146 CG1 CG2 REMARK 470 ASP A 149 CG OD1 OD2 REMARK 470 ASP A 150 CG OD1 OD2 REMARK 470 ASN A 151 CB CG OD1 ND2 REMARK 470 PHE A 152 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 153 CB CG CD NE CZ NH1 NH2 REMARK 470 ALA A 154 CB REMARK 470 ILE A 155 CG1 CG2 CD1 REMARK 470 LEU A 157 CG CD1 CD2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 GLN A 163 CG CD OE1 NE2 REMARK 470 LYS A 165 CB CG CD CE NZ REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 ARG A 192 CG CD NE CZ NH1 NH2 REMARK 470 ALA A 207 CB REMARK 470 ASN A 209 CG OD1 ND2 REMARK 470 THR A 235 OG1 CG2 REMARK 470 ARG A 268 CG CD NE CZ NH1 NH2 REMARK 470 SER A 271 CB OG REMARK 470 ARG A 289 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 74 CG CD OE1 NE2 REMARK 470 THR B 95 OG1 CG2 REMARK 470 VAL B 123 CG1 CG2 REMARK 470 ALA B 125 CB REMARK 470 THR B 127 CB OG1 CG2 REMARK 470 GLU B 128 CB CG CD OE1 OE2 REMARK 470 VAL B 137 CG1 CG2 REMARK 470 ARG B 142 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 143 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL B 146 CG1 CG2 REMARK 470 ASP B 149 CG OD1 OD2 REMARK 470 ASP B 150 CG OD1 OD2 REMARK 470 ASN B 151 CB CG OD1 ND2 REMARK 470 PHE B 152 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 153 CB CG CD NE CZ NH1 NH2 REMARK 470 ALA B 154 CB REMARK 470 ILE B 155 CG1 CG2 CD1 REMARK 470 LEU B 157 CG CD1 CD2 REMARK 470 GLU B 158 CG CD OE1 OE2 REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 GLN B 163 CG CD OE1 NE2 REMARK 470 LYS B 165 CB CG CD CE NZ REMARK 470 LYS B 179 CG CD CE NZ REMARK 470 LYS B 188 CG CD CE NZ REMARK 470 GLU B 191 CG CD OE1 OE2 REMARK 470 ARG B 192 CG CD NE CZ NH1 NH2 REMARK 470 ALA B 207 CB REMARK 470 ASN B 209 CG OD1 ND2 REMARK 470 THR B 235 OG1 CG2 REMARK 470 ARG B 268 CG CD NE CZ NH1 NH2 REMARK 470 SER B 271 CB OG REMARK 470 ARG B 289 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 15 N - CA - C ANGL. DEV. = 21.5 DEGREES REMARK 500 PRO A 16 C - N - CA ANGL. DEV. = -15.8 DEGREES REMARK 500 PRO A 16 C - N - CD ANGL. DEV. = 13.3 DEGREES REMARK 500 PRO A 81 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 HIS B 15 N - CA - C ANGL. DEV. = 20.9 DEGREES REMARK 500 PRO B 16 C - N - CA ANGL. DEV. = -15.8 DEGREES REMARK 500 PRO B 16 C - N - CD ANGL. DEV. = 12.6 DEGREES REMARK 500 PRO B 81 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 18 7.31 -64.15 REMARK 500 TYR A 29 -101.64 66.82 REMARK 500 PRO A 83 71.66 -68.75 REMARK 500 ASN A 98 -122.39 65.06 REMARK 500 GLU A 128 140.19 97.13 REMARK 500 ASP A 139 62.05 -116.94 REMARK 500 PRO A 140 -0.81 -58.48 REMARK 500 ARG A 142 22.62 -67.81 REMARK 500 PHE A 148 177.51 169.20 REMARK 500 ASP A 150 113.27 -6.47 REMARK 500 ASN A 151 1.87 85.28 REMARK 500 PHE A 152 -81.72 60.85 REMARK 500 ARG A 153 -39.45 61.94 REMARK 500 ALA A 154 131.19 79.99 REMARK 500 SER A 156 142.96 -171.49 REMARK 500 GLN A 163 -34.91 -162.79 REMARK 500 PRO A 164 -103.40 -126.05 REMARK 500 LYS A 165 -144.07 64.54 REMARK 500 TYR A 176 -158.90 -139.72 REMARK 500 SER A 178 -61.87 -25.66 REMARK 500 LYS A 179 -8.08 -41.99 REMARK 500 GLU A 182 -71.31 -59.11 REMARK 500 LEU A 195 98.80 -65.51 REMARK 500 LEU A 210 76.62 -109.53 REMARK 500 ARG A 217 -72.05 -60.78 REMARK 500 THR A 224 92.23 -65.15 REMARK 500 ALA A 274 -38.17 -37.27 REMARK 500 LEU A 286 44.65 -85.28 REMARK 500 ARG A 287 -147.30 -176.02 REMARK 500 THR B 18 8.13 -67.56 REMARK 500 TYR B 29 -103.67 64.88 REMARK 500 PRO B 83 71.76 -67.21 REMARK 500 GLU B 94 -70.33 -56.09 REMARK 500 ASN B 98 -120.35 66.23 REMARK 500 GLU B 128 112.35 135.72 REMARK 500 ASP B 139 70.57 -117.37 REMARK 500 ARG B 142 11.11 -60.61 REMARK 500 ASP B 150 104.52 23.76 REMARK 500 ASN B 151 -14.01 89.73 REMARK 500 PHE B 152 -89.84 92.53 REMARK 500 ARG B 153 -56.14 63.37 REMARK 500 ALA B 154 105.08 90.37 REMARK 500 LYS B 160 50.77 26.90 REMARK 500 PRO B 161 91.11 -44.67 REMARK 500 LYS B 162 -2.34 -42.00 REMARK 500 GLN B 163 -77.98 -135.90 REMARK 500 PRO B 164 -105.12 -125.98 REMARK 500 LYS B 165 -95.11 90.99 REMARK 500 SER B 190 -178.20 -63.71 REMARK 500 ALA B 207 -2.81 -56.88 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TTP A 294 O2A REMARK 620 2 ASP A 223 OD2 151.3 REMARK 620 3 ASP A 223 OD1 154.6 54.0 REMARK 620 4 ASP A 108 OD2 79.7 107.5 89.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 223 OD1 REMARK 620 2 ASP B 223 OD2 50.0 REMARK 620 3 TTP B 295 O2A 151.7 157.5 REMARK 620 4 HOH B 326 O 105.5 64.2 95.1 REMARK 620 5 HOH B 380 O 70.5 118.3 84.1 163.3 REMARK 620 6 ASP B 108 OD2 81.8 100.7 83.1 79.6 83.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP A 294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP B 295 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RMLA2_ECOLI RELATED DB: TARGETDB DBREF 1MC3 A 1 293 UNP P61887 RMLA2_ECOLI 1 293 DBREF 1MC3 B 1 293 UNP P61887 RMLA2_ECOLI 1 293 SEQADV 1MC3 GLY A -2 UNP P61887 CLONING ARTIFACT SEQADV 1MC3 SER A -1 UNP P61887 CLONING ARTIFACT SEQADV 1MC3 HIS A 0 UNP P61887 CLONING ARTIFACT SEQADV 1MC3 MSE A 1 UNP P61887 MET 1 MODIFIED RESIDUE SEQADV 1MC3 MSE A 33 UNP P61887 MET 33 MODIFIED RESIDUE SEQADV 1MC3 MSE A 42 UNP P61887 MET 42 MODIFIED RESIDUE SEQADV 1MC3 MSE A 138 UNP P61887 MET 138 MODIFIED RESIDUE SEQADV 1MC3 MSE A 203 UNP P61887 MET 203 MODIFIED RESIDUE SEQADV 1MC3 GLY B -2 UNP P61887 CLONING ARTIFACT SEQADV 1MC3 SER B -1 UNP P61887 CLONING ARTIFACT SEQADV 1MC3 HIS B 0 UNP P61887 CLONING ARTIFACT SEQADV 1MC3 MSE B 1 UNP P61887 MET 1 MODIFIED RESIDUE SEQADV 1MC3 MSE B 33 UNP P61887 MET 33 MODIFIED RESIDUE SEQADV 1MC3 MSE B 42 UNP P61887 MET 42 MODIFIED RESIDUE SEQADV 1MC3 MSE B 138 UNP P61887 MET 138 MODIFIED RESIDUE SEQADV 1MC3 MSE B 203 UNP P61887 MET 203 MODIFIED RESIDUE SEQRES 1 A 296 GLY SER HIS MSE LYS GLY ILE ILE LEU ALA GLY GLY SER SEQRES 2 A 296 GLY THR ARG LEU HIS PRO ILE THR ARG GLY VAL SER LYS SEQRES 3 A 296 GLN LEU LEU PRO ILE TYR ASP LYS PRO MSE ILE TYR TYR SEQRES 4 A 296 PRO LEU SER VAL LEU MSE LEU ALA GLY ILE ARG GLU ILE SEQRES 5 A 296 LEU ILE ILE THR THR PRO GLU ASP LYS GLY TYR PHE GLN SEQRES 6 A 296 ARG LEU LEU GLY ASP GLY SER GLU PHE GLY ILE GLN LEU SEQRES 7 A 296 GLU TYR ALA GLU GLN PRO SER PRO ASP GLY LEU ALA GLN SEQRES 8 A 296 ALA PHE ILE ILE GLY GLU THR PHE LEU ASN GLY GLU PRO SEQRES 9 A 296 SER CYS LEU VAL LEU GLY ASP ASN ILE PHE PHE GLY GLN SEQRES 10 A 296 GLY PHE SER PRO LYS LEU ARG HIS VAL ALA ALA ARG THR SEQRES 11 A 296 GLU GLY ALA THR VAL PHE GLY TYR GLN VAL MSE ASP PRO SEQRES 12 A 296 GLU ARG PHE GLY VAL VAL GLU PHE ASP ASP ASN PHE ARG SEQRES 13 A 296 ALA ILE SER LEU GLU GLU LYS PRO LYS GLN PRO LYS SER SEQRES 14 A 296 ASN TRP ALA VAL THR GLY LEU TYR PHE TYR ASP SER LYS SEQRES 15 A 296 VAL VAL GLU TYR ALA LYS GLN VAL LYS PRO SER GLU ARG SEQRES 16 A 296 GLY GLU LEU GLU ILE THR SER ILE ASN GLN MSE TYR LEU SEQRES 17 A 296 GLU ALA GLY ASN LEU THR VAL GLU LEU LEU GLY ARG GLY SEQRES 18 A 296 PHE ALA TRP LEU ASP THR GLY THR HIS ASP SER LEU ILE SEQRES 19 A 296 GLU ALA SER THR PHE VAL GLN THR VAL GLU LYS ARG GLN SEQRES 20 A 296 GLY PHE LYS ILE ALA CYS LEU GLU GLU ILE ALA TRP ARG SEQRES 21 A 296 ASN GLY TRP LEU ASP ASP GLU GLY VAL LYS ARG ALA ALA SEQRES 22 A 296 SER SER LEU ALA LYS THR GLY TYR GLY GLN TYR LEU LEU SEQRES 23 A 296 GLU LEU LEU ARG ALA ARG PRO ARG GLN TYR SEQRES 1 B 296 GLY SER HIS MSE LYS GLY ILE ILE LEU ALA GLY GLY SER SEQRES 2 B 296 GLY THR ARG LEU HIS PRO ILE THR ARG GLY VAL SER LYS SEQRES 3 B 296 GLN LEU LEU PRO ILE TYR ASP LYS PRO MSE ILE TYR TYR SEQRES 4 B 296 PRO LEU SER VAL LEU MSE LEU ALA GLY ILE ARG GLU ILE SEQRES 5 B 296 LEU ILE ILE THR THR PRO GLU ASP LYS GLY TYR PHE GLN SEQRES 6 B 296 ARG LEU LEU GLY ASP GLY SER GLU PHE GLY ILE GLN LEU SEQRES 7 B 296 GLU TYR ALA GLU GLN PRO SER PRO ASP GLY LEU ALA GLN SEQRES 8 B 296 ALA PHE ILE ILE GLY GLU THR PHE LEU ASN GLY GLU PRO SEQRES 9 B 296 SER CYS LEU VAL LEU GLY ASP ASN ILE PHE PHE GLY GLN SEQRES 10 B 296 GLY PHE SER PRO LYS LEU ARG HIS VAL ALA ALA ARG THR SEQRES 11 B 296 GLU GLY ALA THR VAL PHE GLY TYR GLN VAL MSE ASP PRO SEQRES 12 B 296 GLU ARG PHE GLY VAL VAL GLU PHE ASP ASP ASN PHE ARG SEQRES 13 B 296 ALA ILE SER LEU GLU GLU LYS PRO LYS GLN PRO LYS SER SEQRES 14 B 296 ASN TRP ALA VAL THR GLY LEU TYR PHE TYR ASP SER LYS SEQRES 15 B 296 VAL VAL GLU TYR ALA LYS GLN VAL LYS PRO SER GLU ARG SEQRES 16 B 296 GLY GLU LEU GLU ILE THR SER ILE ASN GLN MSE TYR LEU SEQRES 17 B 296 GLU ALA GLY ASN LEU THR VAL GLU LEU LEU GLY ARG GLY SEQRES 18 B 296 PHE ALA TRP LEU ASP THR GLY THR HIS ASP SER LEU ILE SEQRES 19 B 296 GLU ALA SER THR PHE VAL GLN THR VAL GLU LYS ARG GLN SEQRES 20 B 296 GLY PHE LYS ILE ALA CYS LEU GLU GLU ILE ALA TRP ARG SEQRES 21 B 296 ASN GLY TRP LEU ASP ASP GLU GLY VAL LYS ARG ALA ALA SEQRES 22 B 296 SER SER LEU ALA LYS THR GLY TYR GLY GLN TYR LEU LEU SEQRES 23 B 296 GLU LEU LEU ARG ALA ARG PRO ARG GLN TYR MODRES 1MC3 MSE A 1 MET SELENOMETHIONINE MODRES 1MC3 MSE A 33 MET SELENOMETHIONINE MODRES 1MC3 MSE A 42 MET SELENOMETHIONINE MODRES 1MC3 MSE A 138 MET SELENOMETHIONINE MODRES 1MC3 MSE A 203 MET SELENOMETHIONINE MODRES 1MC3 MSE B 1 MET SELENOMETHIONINE MODRES 1MC3 MSE B 33 MET SELENOMETHIONINE MODRES 1MC3 MSE B 42 MET SELENOMETHIONINE MODRES 1MC3 MSE B 138 MET SELENOMETHIONINE MODRES 1MC3 MSE B 203 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 33 8 HET MSE A 42 8 HET MSE A 138 8 HET MSE A 203 8 HET MSE B 1 8 HET MSE B 33 8 HET MSE B 42 8 HET MSE B 138 8 HET MSE B 203 8 HET MG A 301 1 HET TTP A 294 29 HET MG B 302 1 HET TTP B 295 29 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 MG 2(MG 2+) FORMUL 4 TTP 2(C10 H17 N2 O14 P3) FORMUL 7 HOH *165(H2 O) HELIX 1 1 GLY A 11 ARG A 13 5 3 HELIX 2 2 LEU A 14 ARG A 19 1 6 HELIX 3 3 SER A 22 LEU A 25 5 4 HELIX 4 4 ILE A 34 ALA A 44 1 11 HELIX 5 5 ASP A 57 GLY A 66 1 10 HELIX 6 6 GLY A 68 GLY A 72 5 5 HELIX 7 7 ALA A 87 GLY A 93 1 7 HELIX 8 8 GLY A 93 ASN A 98 1 6 HELIX 9 9 PHE A 116 ALA A 124 1 9 HELIX 10 10 SER A 178 GLN A 186 1 9 HELIX 11 11 GLU A 196 ALA A 207 1 12 HELIX 12 12 THR A 226 GLY A 245 1 20 HELIX 13 13 CYS A 250 ASN A 258 1 9 HELIX 14 14 ASP A 262 LEU A 273 1 12 HELIX 15 15 THR A 276 LEU A 285 1 10 HELIX 16 16 GLY B 11 ARG B 13 5 3 HELIX 17 17 LEU B 14 ARG B 19 1 6 HELIX 18 18 SER B 22 LEU B 25 5 4 HELIX 19 19 ILE B 34 ALA B 44 1 11 HELIX 20 20 ASP B 57 GLY B 66 1 10 HELIX 21 21 GLY B 68 GLY B 72 5 5 HELIX 22 22 ALA B 87 GLY B 93 1 7 HELIX 23 23 GLY B 93 ASN B 98 1 6 HELIX 24 24 GLY B 115 ALA B 125 1 11 HELIX 25 25 SER B 178 GLN B 186 1 9 HELIX 26 26 GLU B 196 ALA B 207 1 12 HELIX 27 27 THR B 226 GLY B 245 1 20 HELIX 28 28 CYS B 250 ASN B 258 1 9 HELIX 29 29 ASP B 262 LEU B 273 1 12 HELIX 30 30 THR B 276 LEU B 285 1 10 SHEET 1 A 7 GLN A 74 GLU A 79 0 SHEET 2 A 7 GLU A 48 THR A 53 1 N ILE A 51 O GLU A 76 SHEET 3 A 7 LYS A 2 LEU A 6 1 N ILE A 5 O ILE A 52 SHEET 4 A 7 SER A 102 LEU A 106 1 O CYS A 103 N ILE A 4 SHEET 5 A 7 TRP A 168 PHE A 175 -1 O TYR A 174 N LEU A 104 SHEET 6 A 7 ALA A 130 GLN A 136 -1 N TYR A 135 O ALA A 169 SHEET 7 A 7 LEU A 210 LEU A 214 1 O GLU A 213 N VAL A 132 SHEET 1 B 2 PRO A 27 ILE A 28 0 SHEET 2 B 2 LYS A 31 PRO A 32 -1 O LYS A 31 N ILE A 28 SHEET 1 C 2 ASN A 109 PHE A 112 0 SHEET 2 C 2 ALA A 220 ASP A 223 -1 O ALA A 220 N PHE A 112 SHEET 1 D 2 GLU A 147 ASP A 149 0 SHEET 2 D 2 PHE A 152 SER A 156 -1 O SER A 156 N GLU A 147 SHEET 1 E 7 GLN B 74 GLU B 79 0 SHEET 2 E 7 GLU B 48 THR B 53 1 N ILE B 51 O GLU B 76 SHEET 3 E 7 LYS B 2 LEU B 6 1 N ILE B 5 O ILE B 52 SHEET 4 E 7 SER B 102 LEU B 106 1 O CYS B 103 N ILE B 4 SHEET 5 E 7 TRP B 168 TYR B 176 -1 O TYR B 174 N LEU B 104 SHEET 6 E 7 ALA B 130 GLN B 136 -1 N TYR B 135 O ALA B 169 SHEET 7 E 7 THR B 211 LEU B 214 1 O GLU B 213 N VAL B 132 SHEET 1 F 2 PRO B 27 ILE B 28 0 SHEET 2 F 2 LYS B 31 PRO B 32 -1 O LYS B 31 N ILE B 28 SHEET 1 G 2 ASN B 109 PHE B 112 0 SHEET 2 G 2 ALA B 220 ASP B 223 -1 O ALA B 220 N PHE B 112 SHEET 1 H 2 VAL B 145 GLU B 147 0 SHEET 2 H 2 SER B 156 GLU B 158 -1 O GLU B 158 N VAL B 145 LINK C HIS A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C PRO A 32 N MSE A 33 1555 1555 1.33 LINK C MSE A 33 N ILE A 34 1555 1555 1.34 LINK C LEU A 41 N MSE A 42 1555 1555 1.32 LINK C MSE A 42 N LEU A 43 1555 1555 1.33 LINK C VAL A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N ASP A 139 1555 1555 1.33 LINK C GLN A 202 N MSE A 203 1555 1555 1.33 LINK C MSE A 203 N TYR A 204 1555 1555 1.33 LINK MG MG A 301 O2A TTP A 294 1555 1555 2.20 LINK MG MG A 301 OD2 ASP A 223 1555 1555 2.54 LINK MG MG A 301 OD1 ASP A 223 1555 1555 2.34 LINK MG MG A 301 OD2 ASP A 108 1555 1555 2.21 LINK C HIS B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C PRO B 32 N MSE B 33 1555 1555 1.33 LINK C MSE B 33 N ILE B 34 1555 1555 1.33 LINK C LEU B 41 N MSE B 42 1555 1555 1.33 LINK C MSE B 42 N LEU B 43 1555 1555 1.33 LINK C VAL B 137 N MSE B 138 1555 1555 1.33 LINK C MSE B 138 N ASP B 139 1555 1555 1.33 LINK C GLN B 202 N MSE B 203 1555 1555 1.33 LINK C MSE B 203 N TYR B 204 1555 1555 1.32 LINK MG MG B 302 OD1 ASP B 223 1555 1555 2.55 LINK MG MG B 302 OD2 ASP B 223 1555 1555 2.65 LINK MG MG B 302 O2A TTP B 295 1555 1555 2.09 LINK MG MG B 302 O HOH B 326 1555 1555 2.05 LINK MG MG B 302 O HOH B 380 1555 1555 2.41 LINK MG MG B 302 OD2 ASP B 108 1555 1555 2.21 SITE 1 AC1 3 ASP A 108 ASP A 223 TTP A 294 SITE 1 AC2 5 ASP B 108 ASP B 223 TTP B 295 HOH B 326 SITE 2 AC2 5 HOH B 380 SITE 1 AC3 21 LEU A 6 GLY A 8 GLY A 9 SER A 10 SITE 2 AC3 21 GLY A 11 THR A 12 ARG A 13 LYS A 23 SITE 3 AC3 21 GLN A 24 GLN A 80 PRO A 83 ASP A 84 SITE 4 AC3 21 GLY A 85 LEU A 86 GLY A 107 ASP A 108 SITE 5 AC3 21 GLU A 194 MG A 301 HOH A 346 HOH A 379 SITE 6 AC3 21 HOH A 466 SITE 1 AC4 21 LEU B 6 GLY B 8 GLY B 9 SER B 10 SITE 2 AC4 21 GLY B 11 THR B 12 ARG B 13 LYS B 23 SITE 3 AC4 21 GLN B 24 GLN B 80 PRO B 83 ASP B 84 SITE 4 AC4 21 GLY B 85 LEU B 86 GLY B 107 ASP B 108 SITE 5 AC4 21 MG B 302 HOH B 326 HOH B 378 HOH B 380 SITE 6 AC4 21 HOH B 441 CRYST1 144.338 71.682 59.413 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006928 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016831 0.00000